RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 EPG5Q9HCE0 2579 aa13.69□□□□□ -0.22
HDAC4-215ENST00000543185 SPATA3Q8NHX4 192 aa13.69□□□□□ -0.22
HDAC4-215ENST00000543185 PRO0461Q9UI25 63 aa13.67□□□□□ -0.22
HDAC4-215ENST00000543185 NHLRC4P0CG21 123 aaPredicted RBP13.66□□□□□ -0.22
HDAC4-215ENST00000543185 CENPFP49454 3210 aa13.66□□□□□ -0.22
HDAC4-215ENST00000543185 LINC01556Q5JQF7 62 aa13.65□□□□□ -0.22
HDAC4-215ENST00000543185 INAFM1C9JVW0 142 aa13.65□□□□□ -0.22
HDAC4-215ENST00000543185 Q6ZQT0 140 aa13.65□□□□□ -0.22
HDAC4-215ENST00000543185 IGKV2D-30A0A075B6S6 120 aa13.65□□□□□ -0.22
HDAC4-215ENST00000543185 IGKV2-30P06310 120 aa13.65□□□□□ -0.22
HDAC4-215ENST00000543185 PRLHP81277 87 aa13.63□□□□□ -0.23
HDAC4-215ENST00000543185 MOBPQ13875 183 aa13.63□□□□□ -0.23
HDAC4-215ENST00000543185 ELOF1P60002 83 aaKnown RBP13.62□□□□□ -0.23
HDAC4-215ENST00000543185 AKAP13Q12802 2813 aa13.6□□□□□ -0.23
HDAC4-215ENST00000543185 C19orf84I3L1E1 186 aa13.59□□□□□ -0.23
HDAC4-215ENST00000543185 SPINT4Q6UDR6 99 aa13.59□□□□□ -0.23
HDAC4-215ENST00000543185 C18orf65Q6ZTR6 163 aa13.59□□□□□ -0.23
HDAC4-215ENST00000543185 LOC101927531A0A1B0GV80 90 aa13.59□□□□□ -0.23
HDAC4-215ENST00000543185 A8MTW9 85 aa13.59□□□□□ -0.23
HDAC4-215ENST00000543185 Q8NBF4 154 aa13.58□□□□□ -0.23
HDAC4-215ENST00000543185 IGHV3OR16-9A0A0B4J2B5 98 aa13.58□□□□□ -0.24
HDAC4-215ENST00000543185 CD164Q04900 197 aa13.58□□□□□ -0.24
HDAC4-215ENST00000543185 DEFB116Q30KQ4 102 aa13.58□□□□□ -0.24
HDAC4-215ENST00000543185 M0R2N4 97 aa13.58□□□□□ -0.24
HDAC4-215ENST00000543185 FSHBP01225 129 aa13.57□□□□□ -0.24
HDAC4-215ENST00000543185 LY6G6CO95867 125 aa13.57□□□□□ -0.24
HDAC4-215ENST00000543185 KIAA0087Q14695 138 aa13.57□□□□□ -0.24
HDAC4-215ENST00000543185 LYPD5Q6UWN5 251 aa13.57□□□□□ -0.24
HDAC4-215ENST00000543185 SMCPP49901 116 aaPredicted RBP13.56□□□□□ -0.24
HDAC4-215ENST00000543185 Q6ZRX8 168 aa13.55□□□□□ -0.24
HDAC4-215ENST00000543185 LY6G6DO95868 133 aa13.53□□□□□ -0.24
HDAC4-215ENST00000543185 C16orf95Q9H693 158 aa13.53□□□□□ -0.24
HDAC4-215ENST00000543185 Q9UF83 564 aa13.53□□□□□ -0.24
HDAC4-215ENST00000543185 TRBV7-4A0A0J9YYF1 115 aa13.52□□□□□ -0.24
HDAC4-215ENST00000543185 KIF25-AS1Q9Y6Z4 181 aa13.52□□□□□ -0.25
HDAC4-215ENST00000543185 WISP2O76076 250 aa13.51□□□□□ -0.25
HDAC4-215ENST00000543185 KLKP1Q107X0 134 aa13.5□□□□□ -0.25
HDAC4-215ENST00000543185 Q6ZSN1 163 aa13.5□□□□□ -0.25
HDAC4-215ENST00000543185 UQCR11O14957 56 aa13.5□□□□□ -0.25
HDAC4-215ENST00000543185 C22orf24Q9Y442 160 aa13.5□□□□□ -0.25
HDAC4-215ENST00000543185 Q6ZRU5 148 aa13.5□□□□□ -0.25
HDAC4-215ENST00000543185 TM2D3Q9BRN9 247 aa13.5□□□□□ -0.25
HDAC4-215ENST00000543185 HECTD1Q9ULT8 2610 aa13.48□□□□□ -0.25
HDAC4-215ENST00000543185 H3BNG1 76 aa13.47□□□□□ -0.25
HDAC4-215ENST00000543185 SMCR5Q8TEV8 140 aa13.47□□□□□ -0.25
HDAC4-215ENST00000543185 FAM19A4Q96LR4 140 aa13.47□□□□□ -0.25
HDAC4-215ENST00000543185 KTN1-AS1Q86SY8 53 aa13.46□□□□□ -0.25
HDAC4-215ENST00000543185 LINC00313P59037 77 aa13.45□□□□□ -0.26
HDAC4-215ENST00000543185 FAM218AQ96MZ4 157 aa13.44□□□□□ -0.26
HDAC4-215ENST00000543185 A8MWP4 228 aa13.43□□□□□ -0.26
HDAC4-215ENST00000543185 FAM229AH3BQW9 127 aa13.43□□□□□ -0.26
HDAC4-215ENST00000543185 PLA2G2AP14555 144 aa13.42□□□□□ -0.26
HDAC4-215ENST00000543185 C1orf134Q5TEV5 83 aa13.42□□□□□ -0.26
HDAC4-215ENST00000543185 CENPEQ02224 2701 aa13.42□□□□□ -0.26
HDAC4-215ENST00000543185 ATRQ13535 2644 aa13.4□□□□□ -0.26
HDAC4-215ENST00000543185 MAST4O15021 2626 aa13.4□□□□□ -0.26
HDAC4-215ENST00000543185 LINC00476Q8WZB0 136 aa13.4□□□□□ -0.26
HDAC4-215ENST00000543185 CRIPTQ9P021 101 aa13.39□□□□□ -0.27
HDAC4-215ENST00000543185 SSBP3-AS1Q7Z2R9 100 aa13.39□□□□□ -0.27
HDAC4-215ENST00000543185 COA5Q86WW8 74 aa13.39□□□□□ -0.27
HDAC4-215ENST00000543185 LINC01600Q96MT4 127 aa13.38□□□□□ -0.27
HDAC4-215ENST00000543185 IGLV6-57P01721 117 aa13.38□□□□□ -0.27
HDAC4-215ENST00000543185 GVQW2A0A096LPI5 108 aaPredicted RBP13.38□□□□□ -0.27
HDAC4-215ENST00000543185 LINC00167Q96N53 147 aa13.36□□□□□ -0.27
HDAC4-215ENST00000543185 EDN2P20800 178 aa13.35□□□□□ -0.27
HDAC4-215ENST00000543185 NBEAL1Q6ZS30 2694 aa13.34□□□□□ -0.27
HDAC4-215ENST00000543185 PRR15Q8IV56 129 aa13.34□□□□□ -0.27
HDAC4-215ENST00000543185 C16orf90A8MZG2 172 aa13.34□□□□□ -0.27
HDAC4-215ENST00000543185 COL4A2P08572 1712 aa13.33□□□□□ -0.28
HDAC4-215ENST00000543185 LINC00315P59091 139 aa13.33□□□□□ -0.28
HDAC4-215ENST00000543185 MGAM2Q2M2H8 2515 aa13.32□□□□□ -0.28
HDAC4-215ENST00000543185 OXLD1Q5BKU9 147 aa13.31□□□□□ -0.28
HDAC4-215ENST00000543185 FLNAP21333 2647 aaKnown RBP13.3□□□□□ -0.28
HDAC4-215ENST00000543185 MIR22HGQ0VDD5 57 aa13.29□□□□□ -0.28
HDAC4-215ENST00000543185 SPACA4Q8TDM5 124 aa13.28□□□□□ -0.28
HDAC4-215ENST00000543185 AVPP01185 164 aa13.27□□□□□ -0.29
HDAC4-215ENST00000543185 PLA2G1BP04054 148 aaKnown RBP13.27□□□□□ -0.29
HDAC4-215ENST00000543185 LCA10Q71F78 164 aa13.26□□□□□ -0.29
HDAC4-215ENST00000543185 SPANXA2-OT1Q8N9U9 137 aa13.26□□□□□ -0.29
HDAC4-215ENST00000543185 EPM2AB3EWF7 344 aa13.26□□□□□ -0.29
HDAC4-215ENST00000543185 FHL3Q13643 280 aa13.26□□□□□ -0.29
HDAC4-215ENST00000543185 IGLV8-61A0A075B6I0 122 aa13.25□□□□□ -0.29
HDAC4-215ENST00000543185 Q6ZRP5 223 aa13.22□□□□□ -0.29
HDAC4-215ENST00000543185 A8MUN3 132 aa13.21□□□□□ -0.3
HDAC4-215ENST00000543185 K7EQZ3 153 aa13.2□□□□□ -0.3
HDAC4-215ENST00000543185 LITAFQ99732 161 aa13.2□□□□□ -0.3
HDAC4-215ENST00000543185 MDFIQ99750 246 aa13.2□□□□□ -0.3
HDAC4-215ENST00000543185 RPL37AP61513 92 aaKnown RBP13.19□□□□□ -0.3
HDAC4-215ENST00000543185 MRPL34Q9BQ48 92 aaKnown RBP13.19□□□□□ -0.3
HDAC4-215ENST00000543185 H7BZZ5 65 aa13.18□□□□□ -0.3
HDAC4-215ENST00000543185 CFAP46Q8IYW2 2715 aa13.18□□□□□ -0.3
HDAC4-215ENST00000543185 LINC00336Q6ZUF6 198 aa13.17□□□□□ -0.3
HDAC4-215ENST00000543185 C10orf142B7Z368 130 aa13.16□□□□□ -0.3
HDAC4-215ENST00000543185 KCNQ1DNQ9H478 68 aa13.14□□□□□ -0.31
HDAC4-215ENST00000543185 ST20-AS1Q8NBB2 130 aa13.14□□□□□ -0.31
HDAC4-215ENST00000543185 CDC42SE1Q9NRR8 79 aa13.13□□□□□ -0.31
HDAC4-215ENST00000543185 TYMSOSQ8TAI1 123 aa13.11□□□□□ -0.31
HDAC4-215ENST00000543185 WIPF1O43516 503 aa13.11□□□□□ -0.31
HDAC4-215ENST00000543185 FLNBO75369 2602 aaKnown RBP13.1□□□□□ -0.31
HDAC4-215ENST00000543185 DNAH10OSP0CZ25 163 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms