RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 KRTDAPP60985 99 aa13.53□□□□□ -0.24
VEGFA-217ENST00000518538 LINC00587B1AMM8 73 aa13.52□□□□□ -0.25
VEGFA-217ENST00000518538 SRSF9Q13242 221 aaKnown RBP eCLIP13.52□□□□□ -0.25
VEGFA-217ENST00000518538 MEIG1Q5JSS6 88 aa13.52□□□□□ -0.25
VEGFA-217ENST00000518538 SPINK6Q6UWN8 80 aa13.52□□□□□ -0.25
VEGFA-217ENST00000518538 LGALS3P17931 250 aaKnown RBP13.51□□□□□ -0.25
VEGFA-217ENST00000518538 NMUP48645 174 aa13.51□□□□□ -0.25
VEGFA-217ENST00000518538 A0A0U1RRA0 63 aa13.5□□□□□ -0.25
VEGFA-217ENST00000518538 E9PLD3 99 aa13.5□□□□□ -0.25
VEGFA-217ENST00000518538 SMIM13P0DJ93 91 aa13.5□□□□□ -0.25
VEGFA-217ENST00000518538 NKAPP1Q8N9T2 125 aa13.5□□□□□ -0.25
VEGFA-217ENST00000518538 J3QL48 77 aa13.49□□□□□ -0.25
VEGFA-217ENST00000518538 IGLV7-43P04211 117 aa13.48□□□□□ -0.25
VEGFA-217ENST00000518538 VPREB1P12018 145 aa13.48□□□□□ -0.25
VEGFA-217ENST00000518538 LINC00167Q96N53 147 aa13.48□□□□□ -0.25
VEGFA-217ENST00000518538 PKHD1L1Q86WI1 4243 aa13.47□□□□□ -0.25
VEGFA-217ENST00000518538 C20orf202A1L168 122 aa13.47□□□□□ -0.25
VEGFA-217ENST00000518538 RPL24P83731 157 aaKnown RBP13.47□□□□□ -0.25
VEGFA-217ENST00000518538 HIST3H2BBQ8N257 126 aa13.47□□□□□ -0.25
VEGFA-217ENST00000518538 MIR7-3HGQ8N6C7 128 aa13.46□□□□□ -0.25
VEGFA-217ENST00000518538 S100A6P06703 90 aa13.45□□□□□ -0.26
VEGFA-217ENST00000518538 S100A2P29034 98 aa13.45□□□□□ -0.26
VEGFA-217ENST00000518538 GAGE10A6NGK3 116 aa13.44□□□□□ -0.26
VEGFA-217ENST00000518538 Q8NDZ9 215 aa13.44□□□□□ -0.26
VEGFA-217ENST00000518538 RPL37AP8A6NKH3 93 aa13.43□□□□□ -0.26
VEGFA-217ENST00000518538 HIST1H2BLQ99880 126 aa13.43□□□□□ -0.26
VEGFA-217ENST00000518538 REG3GQ6UW15 175 aa13.41□□□□□ -0.26
VEGFA-217ENST00000518538 LRP1Q07954 4544 aaKnown RBP13.41□□□□□ -0.26
VEGFA-217ENST00000518538 AKR1D1P51857 326 aa13.4□□□□□ -0.26
VEGFA-217ENST00000518538 DMBT1Q9UGM3 2413 aaPredicted RBP13.4□□□□□ -0.26
VEGFA-217ENST00000518538 BOD1L2Q8IYS8 172 aa13.39□□□□□ -0.27
VEGFA-217ENST00000518538 DIRC1Q969H9 104 aa13.39□□□□□ -0.27
VEGFA-217ENST00000518538 A0A0J9YXY3 114 aa13.38□□□□□ -0.27
VEGFA-217ENST00000518538 IGLV1-50A0A075B6I6 118 aa13.37□□□□□ -0.27
VEGFA-217ENST00000518538 IGKV2-28A0A075B6P5 120 aa13.37□□□□□ -0.27
VEGFA-217ENST00000518538 IGKV2D-26A0A0A0MRZ7 120 aa13.37□□□□□ -0.27
VEGFA-217ENST00000518538 BCE1O60756 84 aa13.37□□□□□ -0.27
VEGFA-217ENST00000518538 IGKV2D-28P01615 120 aa13.37□□□□□ -0.27
VEGFA-217ENST00000518538 DAND5Q8N907 189 aa13.37□□□□□ -0.27
VEGFA-217ENST00000518538 FAT3Q8TDW7 4589 aa13.36□□□□□ -0.27
VEGFA-217ENST00000518538 LOC107984156A0A0G2JMH3 177 aa13.36□□□□□ -0.27
VEGFA-217ENST00000518538 SNRPEP62304 92 aaKnown RBP13.36□□□□□ -0.27
VEGFA-217ENST00000518538 ARL17AQ8IVW1 177 aa13.36□□□□□ -0.27
VEGFA-217ENST00000518538 LINC01600Q96MT4 127 aa13.36□□□□□ -0.27
VEGFA-217ENST00000518538 H0Y9J4 135 aa13.35□□□□□ -0.27
VEGFA-217ENST00000518538 M0R378 163 aa13.35□□□□□ -0.27
VEGFA-217ENST00000518538 ZNF861PO60384 105 aa13.35□□□□□ -0.27
VEGFA-217ENST00000518538 ATOH7Q8N100 152 aa13.35□□□□□ -0.27
VEGFA-217ENST00000518538 ZNF815PA8K554 130 aa13.34□□□□□ -0.27
VEGFA-217ENST00000518538 MT1HL1P0DM35 61 aa13.34□□□□□ -0.27
VEGFA-217ENST00000518538 C5orf52A6NGY3 159 aa13.33□□□□□ -0.28
VEGFA-217ENST00000518538 ANKRD39Q53RE8 183 aa13.32□□□□□ -0.28
VEGFA-217ENST00000518538 MIEN1Q9BRT3 115 aa13.32□□□□□ -0.28
VEGFA-217ENST00000518538 TTTY13Q9BZ97 58 aa13.32□□□□□ -0.28
VEGFA-217ENST00000518538 NCR3O14931 201 aa13.31□□□□□ -0.28
VEGFA-217ENST00000518538 TIMM17BO60830 172 aa13.31□□□□□ -0.28
VEGFA-217ENST00000518538 RPL28P46779 137 aaKnown RBP13.31□□□□□ -0.28
VEGFA-217ENST00000518538 ADAMTSL4-AS1Q5T5F5 129 aa13.31□□□□□ -0.28
VEGFA-217ENST00000518538 TMEM238C9JI98 176 aa13.29□□□□□ -0.28
VEGFA-217ENST00000518538 LITAFQ99732 161 aa13.29□□□□□ -0.28
VEGFA-217ENST00000518538 TMEM126AQ9H061 195 aa13.29□□□□□ -0.28
VEGFA-217ENST00000518538 UBE2AP49459 152 aa13.27□□□□□ -0.29
VEGFA-217ENST00000518538 KRTAP13-1Q8IUC0 172 aa13.27□□□□□ -0.29
VEGFA-217ENST00000518538 NDUFC2O95298 119 aa13.26□□□□□ -0.29
VEGFA-217ENST00000518538 SOSTDC1Q6X4U4 206 aa13.26□□□□□ -0.29
VEGFA-217ENST00000518538 TRBV10-2A0A0K0K1G8 114 aa13.25□□□□□ -0.29
VEGFA-217ENST00000518538 NPC2P61916 151 aa13.25□□□□□ -0.29
VEGFA-217ENST00000518538 SPANXB1Q9NS25 103 aaPredicted RBP13.25□□□□□ -0.29
VEGFA-217ENST00000518538 EIF4EBP3O60516 100 aaPredicted RBP13.24□□□□□ -0.29
VEGFA-217ENST00000518538 FAM19A1Q7Z5A9 133 aa13.24□□□□□ -0.29
VEGFA-217ENST00000518538 HERC1Q15751 4861 aa13.23□□□□□ -0.29
VEGFA-217ENST00000518538 PRYO14603 147 aa13.23□□□□□ -0.29
VEGFA-217ENST00000518538 KRTAP1-4P0C5Y4 121 aa13.23□□□□□ -0.29
VEGFA-217ENST00000518538 KRTAP10-8P60410 259 aa13.23□□□□□ -0.29
VEGFA-217ENST00000518538 SCGB1D4Q6XE38 83 aa13.23□□□□□ -0.29
VEGFA-217ENST00000518538 LINC00308Q8TCZ7 52 aa13.23□□□□□ -0.29
VEGFA-217ENST00000518538 TRBV10-3A0A0K0K1G6 114 aa13.22□□□□□ -0.29
VEGFA-217ENST00000518538 HSBP1L1C9JCN9 74 aa13.22□□□□□ -0.29
VEGFA-217ENST00000518538 PCP2Q8IVA1 136 aa13.22□□□□□ -0.29
VEGFA-217ENST00000518538 KCNQ1DNQ9H478 68 aa13.22□□□□□ -0.29
VEGFA-217ENST00000518538 PRLHP81277 87 aa13.21□□□□□ -0.29
VEGFA-217ENST00000518538 SCGB1D1O95968 90 aa13.19□□□□□ -0.3
VEGFA-217ENST00000518538 DDTP30046 118 aa13.19□□□□□ -0.3
VEGFA-217ENST00000518538 S100A12P80511 92 aa13.19□□□□□ -0.3
VEGFA-217ENST00000518538 SPANXDQ9BXN6 97 aa13.19□□□□□ -0.3
VEGFA-217ENST00000518538 SPANXCQ9NY87 97 aa13.19□□□□□ -0.3
VEGFA-217ENST00000518538 SPRR1AP35321 89 aa13.18□□□□□ -0.3
VEGFA-217ENST00000518538 PRR26Q8N8Z3 221 aa13.17□□□□□ -0.3
VEGFA-217ENST00000518538 S100A7L2Q5SY68 101 aa13.16□□□□□ -0.3
VEGFA-217ENST00000518538 LINC00337Q8N6G1 96 aa13.16□□□□□ -0.3
VEGFA-217ENST00000518538 IGLV6-57P01721 117 aa13.15□□□□□ -0.3
VEGFA-217ENST00000518538 KRTAP4-16G5E9R7 235 aaPredicted RBP13.13□□□□□ -0.31
VEGFA-217ENST00000518538 Q6ZVH6 145 aa13.13□□□□□ -0.31
VEGFA-217ENST00000518538 COPS9Q8WXC6 57 aa13.13□□□□□ -0.31
VEGFA-217ENST00000518538 ETDCA0A1B0GVM5 59 aa13.12□□□□□ -0.31
VEGFA-217ENST00000518538 IFITM1P13164 125 aa13.12□□□□□ -0.31
VEGFA-217ENST00000518538 PPDPFQ9H3Y8 114 aa13.12□□□□□ -0.31
VEGFA-217ENST00000518538 RPL13AP40429 203 aaKnown RBP13.11□□□□□ -0.31
VEGFA-217ENST00000518538 HIGD2AQ9BW72 106 aa13.11□□□□□ -0.31
VEGFA-217ENST00000518538 TNXBP22105 4242 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms