RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 KRTAP9-3Q9BYQ3 159 aa6.36□□□□□ -1.39
LIMCH1-221ENST00000515785 NXT2Q9NPJ8 142 aaKnown RBP6.36□□□□□ -1.39
LIMCH1-221ENST00000515785 SMIM6P0DI80 62 aa6.35□□□□□ -1.39
LIMCH1-221ENST00000515785 KRTDAPP60985 99 aa6.35□□□□□ -1.39
LIMCH1-221ENST00000515785 C2orf82Q6UX34 121 aa6.35□□□□□ -1.39
LIMCH1-221ENST00000515785 CSDC2Q9Y534 153 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-221ENST00000515785 IGHV3OR16-9A0A0B4J2B5 98 aa6.34□□□□□ -1.39
LIMCH1-221ENST00000515785 TRBV27A0A0K0K1C4 114 aa6.34□□□□□ -1.39
LIMCH1-221ENST00000515785 NDUFC2-KCTD14E9PQ53 114 aa6.34□□□□□ -1.39
LIMCH1-221ENST00000515785 BCE1O60756 84 aa6.34□□□□□ -1.39
LIMCH1-221ENST00000515785 LEPROTL1O95214 131 aa6.34□□□□□ -1.39
LIMCH1-221ENST00000515785 HBDP02042 147 aa6.34□□□□□ -1.39
LIMCH1-221ENST00000515785 SMAGPQ0VAQ4 97 aa6.34□□□□□ -1.39
LIMCH1-221ENST00000515785 LBHQ53QV2 105 aaPredicted RBP6.34□□□□□ -1.39
LIMCH1-221ENST00000515785 FAM104AQ969W3 186 aa6.34□□□□□ -1.39
LIMCH1-221ENST00000515785 IGKV2D-26A0A0A0MRZ7 120 aa6.33□□□□□ -1.4
LIMCH1-221ENST00000515785 SYS1-DBNDD2H3BUS1 97 aa6.33□□□□□ -1.4
LIMCH1-221ENST00000515785 VCYO14598 125 aa6.33□□□□□ -1.4
LIMCH1-221ENST00000515785 RPL39P62891 51 aaKnown RBP6.33□□□□□ -1.4
LIMCH1-221ENST00000515785 KIAA0087Q14695 138 aa6.33□□□□□ -1.4
LIMCH1-221ENST00000515785 PMCHL2Q9BQD1 86 aa6.33□□□□□ -1.4
LIMCH1-221ENST00000515785 RPL37AP8A6NKH3 93 aa6.32□□□□□ -1.4
LIMCH1-221ENST00000515785 PPP1R17O96001 155 aa6.32□□□□□ -1.4
LIMCH1-221ENST00000515785 ZC2HC1BQ5TFG8 222 aa6.32□□□□□ -1.4
LIMCH1-221ENST00000515785 TOMM6Q96B49 74 aa6.32□□□□□ -1.4
LIMCH1-221ENST00000515785 XAGE1AQ9HD64 81 aa6.32□□□□□ -1.4
LIMCH1-221ENST00000515785 TRBV30A0A0K0K1B3 111 aa6.31□□□□□ -1.4
LIMCH1-221ENST00000515785 SCGB1D1O95968 90 aa6.31□□□□□ -1.4
LIMCH1-221ENST00000515785 SEC61BP60468 96 aaKnown RBP6.31□□□□□ -1.4
LIMCH1-221ENST00000515785 C2orf66Q6UXQ4 117 aa6.31□□□□□ -1.4
LIMCH1-221ENST00000515785 TEX43Q6ZNM6 134 aa6.31□□□□□ -1.4
LIMCH1-221ENST00000515785 ATOH7Q8N100 152 aa6.31□□□□□ -1.4
LIMCH1-221ENST00000515785 IFI27L1Q96BM0 104 aa6.31□□□□□ -1.4
LIMCH1-221ENST00000515785 IGIPA6NJ69 53 aa6.3□□□□□ -1.4
LIMCH1-221ENST00000515785 KRTAP13-3Q3SY46 172 aa6.3□□□□□ -1.4
LIMCH1-221ENST00000515785 FAM229BQ4G0N7 80 aa6.3□□□□□ -1.4
LIMCH1-221ENST00000515785 ORMDL2Q53FV1 153 aa6.3□□□□□ -1.4
LIMCH1-221ENST00000515785 LINC01545Q5VT33 79 aa6.3□□□□□ -1.4
LIMCH1-221ENST00000515785 TIMM21Q9BVV7 248 aa6.3□□□□□ -1.4
LIMCH1-221ENST00000515785 H0Y8G0 127 aa6.29□□□□□ -1.4
LIMCH1-221ENST00000515785 K7EMI3 77 aa6.29□□□□□ -1.4
LIMCH1-221ENST00000515785 UBE2AP49459 152 aa6.29□□□□□ -1.4
LIMCH1-221ENST00000515785 PET117Q6UWS5 81 aa6.29□□□□□ -1.4
LIMCH1-221ENST00000515785 MRPL55Q7Z7F7 128 aaKnown RBP6.29□□□□□ -1.4
LIMCH1-221ENST00000515785 KIR2DL4Q99706 377 aa6.29□□□□□ -1.4
LIMCH1-221ENST00000515785 HSPB8Q9UJY1 196 aa6.29□□□□□ -1.4
LIMCH1-221ENST00000515785 GAGE10A6NGK3 116 aa6.28□□□□□ -1.4
LIMCH1-221ENST00000515785 MT1HP80294 61 aa6.28□□□□□ -1.4
LIMCH1-221ENST00000515785 C3orf22Q8N5N4 141 aa6.28□□□□□ -1.4
LIMCH1-221ENST00000515785 LINC00167Q96N53 147 aa6.28□□□□□ -1.4
LIMCH1-221ENST00000515785 MAP1LC3CQ9BXW4 147 aa6.28□□□□□ -1.4
LIMCH1-221ENST00000515785 PRO1933Q9H354 126 aa6.28□□□□□ -1.4
LIMCH1-221ENST00000515785 SCGB3A1Q96QR1 104 aa6.27□□□□□ -1.41
LIMCH1-221ENST00000515785 CYSLTR1Q9Y271 337 aa6.27□□□□□ -1.41
LIMCH1-221ENST00000515785 CFC1BP0CG36 223 aa6.26□□□□□ -1.41
LIMCH1-221ENST00000515785 FP248Q71RG6 208 aaPredicted RBP6.26□□□□□ -1.41
LIMCH1-221ENST00000515785 ERASQ7Z444 233 aa6.26□□□□□ -1.41
LIMCH1-221ENST00000515785 TOMM7Q9P0U1 55 aa6.26□□□□□ -1.41
LIMCH1-221ENST00000515785 TP73-AS1Q9UF72 201 aa6.26□□□□□ -1.41
LIMCH1-221ENST00000515785 IGLV4-3A0A075B6K6 122 aa6.25□□□□□ -1.41
LIMCH1-221ENST00000515785 ATP5LO75964 103 aa6.25□□□□□ -1.41
LIMCH1-221ENST00000515785 KRTAP13-1Q8IUC0 172 aa6.25□□□□□ -1.41
LIMCH1-221ENST00000515785 PAM16Q9Y3D7 125 aa6.25□□□□□ -1.41
LIMCH1-221ENST00000515785 PCP4L1A6NKN8 68 aa6.24□□□□□ -1.41
LIMCH1-221ENST00000515785 PRSS2P07478 247 aa6.24□□□□□ -1.41
LIMCH1-221ENST00000515785 KRTAP10-6P60371 365 aaPredicted RBP6.24□□□□□ -1.41
LIMCH1-221ENST00000515785 CKS1BP61024 79 aa6.24□□□□□ -1.41
LIMCH1-221ENST00000515785 CTAG1AP78358 180 aa6.24□□□□□ -1.41
LIMCH1-221ENST00000515785 TIMM17AQ99595 171 aa6.24□□□□□ -1.41
LIMCH1-221ENST00000515785 TRAV12-1A0A0B4J245 112 aa6.23□□□□□ -1.41
LIMCH1-221ENST00000515785 MRPS36P82909 103 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-221ENST00000515785 KRTAP19-2Q3LHN2 52 aa6.23□□□□□ -1.41
LIMCH1-221ENST00000515785 SPATA45Q537H7 98 aa6.23□□□□□ -1.41
LIMCH1-221ENST00000515785 C6orf226Q5I0X4 101 aa6.23□□□□□ -1.41
LIMCH1-221ENST00000515785 AMELXQ99217 191 aa6.23□□□□□ -1.41
LIMCH1-221ENST00000515785 CST9LQ9H4G1 147 aa6.23□□□□□ -1.41
LIMCH1-221ENST00000515785 PYGO1Q9Y3Y4 419 aa6.23□□□□□ -1.41
LIMCH1-221ENST00000515785 SPAG11AQ6PDA7 123 aa6.22□□□□□ -1.41
LIMCH1-221ENST00000515785 Q6ZN92 141 aa6.22□□□□□ -1.41
LIMCH1-221ENST00000515785 TMEM141Q96I45 108 aa6.22□□□□□ -1.41
LIMCH1-221ENST00000515785 VAMP8Q9BV40 100 aa6.22□□□□□ -1.41
LIMCH1-221ENST00000515785 SPANXA1Q9NS26 97 aa6.22□□□□□ -1.41
LIMCH1-221ENST00000515785 CHTOPQ9Y3Y2 248 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-221ENST00000515785 C11orf86A6NJI1 115 aa6.21□□□□□ -1.42
LIMCH1-221ENST00000515785 LINC00587B1AMM8 73 aa6.21□□□□□ -1.42
LIMCH1-221ENST00000515785 F8VRH5 84 aa6.21□□□□□ -1.42
LIMCH1-221ENST00000515785 PRLHP81277 87 aa6.21□□□□□ -1.42
LIMCH1-221ENST00000515785 PMVKQ15126 192 aa6.21□□□□□ -1.42
LIMCH1-221ENST00000515785 C20orf202A1L168 122 aa6.2□□□□□ -1.42
LIMCH1-221ENST00000515785 IGKCP01834 107 aa6.2□□□□□ -1.42
LIMCH1-221ENST00000515785 IGLC3P0DOY3 106 aa6.2□□□□□ -1.42
LIMCH1-221ENST00000515785 S100A12P80511 92 aa6.2□□□□□ -1.42
LIMCH1-221ENST00000515785 DAND5Q8N907 189 aa6.2□□□□□ -1.42
LIMCH1-221ENST00000515785 C14orf144Q96I85 54 aa6.2□□□□□ -1.42
LIMCH1-221ENST00000515785 TTTY13Q9BZ97 58 aa6.2□□□□□ -1.42
LIMCH1-221ENST00000515785 IGKV2-28A0A075B6P5 120 aa6.19□□□□□ -1.42
LIMCH1-221ENST00000515785 M0R2T5 61 aa6.19□□□□□ -1.42
LIMCH1-221ENST00000515785 DPM2O94777 84 aa6.19□□□□□ -1.42
LIMCH1-221ENST00000515785 IGKV2D-28P01615 120 aa6.19□□□□□ -1.42
LIMCH1-221ENST00000515785 G0S2P27469 103 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms