RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ZNF561-AS1K7EIQ3 104 aa9.97□□□□□ -0.81
NUP54-217ENST00000514987 C11orf45Q8TAV5 145 aa9.97□□□□□ -0.81
NUP54-217ENST00000514987 DEFB131BA0A096LNP1 70 aa9.97□□□□□ -0.81
NUP54-217ENST00000514987 H3BQ85 93 aa9.97□□□□□ -0.81
NUP54-217ENST00000514987 IGLV6-57P01721 117 aa9.97□□□□□ -0.81
NUP54-217ENST00000514987 LINC01556Q5JQF7 62 aa9.97□□□□□ -0.81
NUP54-217ENST00000514987 C6orf48Q9UBA6 75 aa9.97□□□□□ -0.81
NUP54-217ENST00000514987 ESRGQ1W209 222 aa9.96□□□□□ -0.82
NUP54-217ENST00000514987 C6orf99Q4VX62 202 aa9.96□□□□□ -0.82
NUP54-217ENST00000514987 C2orf48Q96LS8 159 aa9.96□□□□□ -0.82
NUP54-217ENST00000514987 KRTAP26-1Q6PEX3 210 aa9.95□□□□□ -0.82
NUP54-217ENST00000514987 CAMK2N2Q96S95 79 aa9.95□□□□□ -0.82
NUP54-217ENST00000514987 SLPIP03973 132 aa9.94□□□□□ -0.82
NUP54-217ENST00000514987 LINC00575Q6W349 94 aa9.94□□□□□ -0.82
NUP54-217ENST00000514987 Q8NDZ9 215 aa9.94□□□□□ -0.82
NUP54-217ENST00000514987 LINC00526Q96FQ7 95 aa9.94□□□□□ -0.82
NUP54-217ENST00000514987 C1orf43Q9BWL3 253 aa9.94□□□□□ -0.82
NUP54-217ENST00000514987 C14orf132Q9NPU4 83 aa9.94□□□□□ -0.82
NUP54-217ENST00000514987 SMCR5Q8TEV8 140 aa9.92□□□□□ -0.82
NUP54-217ENST00000514987 hADV29S1A0JD25 119 aa9.92□□□□□ -0.82
NUP54-217ENST00000514987 RPL18AQ02543 176 aaKnown RBP9.92□□□□□ -0.82
NUP54-217ENST00000514987 TRBV7-6A0A0J9YX20 115 aa9.9□□□□□ -0.82
NUP54-217ENST00000514987 GHRHP01286 108 aa9.9□□□□□ -0.82
NUP54-217ENST00000514987 CCKP06307 115 aa9.9□□□□□ -0.82
NUP54-217ENST00000514987 NHLRC4P0CG21 123 aaPredicted RBP9.9□□□□□ -0.82
NUP54-217ENST00000514987 C9orf129Q5T035 196 aaKnown RBP9.9□□□□□ -0.82
NUP54-217ENST00000514987 F8P00451 2351 aa9.9□□□□□ -0.82
NUP54-217ENST00000514987 TRAV23DV6A0A075B6W5 121 aa9.89□□□□□ -0.83
NUP54-217ENST00000514987 TRAV10A0A0B4J240 114 aa9.89□□□□□ -0.83
NUP54-217ENST00000514987 DNAH10OSP0CZ25 163 aa9.89□□□□□ -0.83
NUP54-217ENST00000514987 HIGD2BQ4VC39 106 aa9.89□□□□□ -0.83
NUP54-217ENST00000514987 C15orf56Q8N910 161 aa9.89□□□□□ -0.83
NUP54-217ENST00000514987 NDUFC2-KCTD14E9PQ53 114 aa9.88□□□□□ -0.83
NUP54-217ENST00000514987 DIRC1Q969H9 104 aa9.88□□□□□ -0.83
NUP54-217ENST00000514987 M0R378 163 aa9.88□□□□□ -0.83
NUP54-217ENST00000514987 TRBV10-3A0A0K0K1G6 114 aa9.87□□□□□ -0.83
NUP54-217ENST00000514987 Q6JHZ5 121 aa9.87□□□□□ -0.83
NUP54-217ENST00000514987 Q6ZRU5 148 aa9.87□□□□□ -0.83
NUP54-217ENST00000514987 XAGE1AQ9HD64 81 aa9.87□□□□□ -0.83
NUP54-217ENST00000514987 IGKV2D-24A0A075B6R9 120 aa9.86□□□□□ -0.83
NUP54-217ENST00000514987 VPREB1P12018 145 aa9.86□□□□□ -0.83
NUP54-217ENST00000514987 TM2D3Q9BRN9 247 aa9.84□□□□□ -0.83
NUP54-217ENST00000514987 ZNF73O43830 326 aaPredicted RBP9.84□□□□□ -0.83
NUP54-217ENST00000514987 COX7BP24311 80 aa9.84□□□□□ -0.83
NUP54-217ENST00000514987 SYCNQ0VAF6 134 aa9.84□□□□□ -0.83
NUP54-217ENST00000514987 LINC00846Q9NV44 126 aa9.84□□□□□ -0.83
NUP54-217ENST00000514987 PDE6GP18545 87 aa9.83□□□□□ -0.84
NUP54-217ENST00000514987 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.83□□□□□ -0.84
NUP54-217ENST00000514987 LOC110117498A0A087WWA1 95 aa9.82□□□□□ -0.84
NUP54-217ENST00000514987 FAM236AA0A1B0GUQ0 79 aa9.82□□□□□ -0.84
NUP54-217ENST00000514987 FAM236BA0A1B0GV22 79 aa9.82□□□□□ -0.84
NUP54-217ENST00000514987 RBM3P98179 157 aaKnown RBP9.82□□□□□ -0.84
NUP54-217ENST00000514987 RMI2Q96E14 147 aa9.82□□□□□ -0.84
NUP54-217ENST00000514987 ELOF1P60002 83 aaKnown RBP9.81□□□□□ -0.84
NUP54-217ENST00000514987 ATP5EP2Q5VTU8 51 aa9.81□□□□□ -0.84
NUP54-217ENST00000514987 TRRAPQ9Y4A5 3859 aa9.81□□□□□ -0.84
NUP54-217ENST00000514987 Q6ZQY7 126 aa9.8□□□□□ -0.84
NUP54-217ENST00000514987 LAMTOR3Q9UHA4 124 aa9.8□□□□□ -0.84
NUP54-217ENST00000514987 TLX1NBP0CAT3 122 aa9.79□□□□□ -0.84
NUP54-217ENST00000514987 LINC00588Q9Y4M8 146 aa9.78□□□□□ -0.84
NUP54-217ENST00000514987 Q6ZRP5 223 aa9.77□□□□□ -0.85
NUP54-217ENST00000514987 DSCR8Q96T75 97 aa9.77□□□□□ -0.85
NUP54-217ENST00000514987 PLA2G2DQ9UNK4 145 aa9.77□□□□□ -0.85
NUP54-217ENST00000514987 HIST1H4AP62805 103 aaKnown RBP9.76□□□□□ -0.85
NUP54-217ENST00000514987 Q6ZQT0 140 aa9.76□□□□□ -0.85
NUP54-217ENST00000514987 MRAPQ8TCY5 172 aa9.76□□□□□ -0.85
NUP54-217ENST00000514987 UBL5Q9BZL1 73 aa9.76□□□□□ -0.85
NUP54-217ENST00000514987 CCDC179H3BU77 68 aa9.75□□□□□ -0.85
NUP54-217ENST00000514987 K7EIL1 84 aa9.75□□□□□ -0.85
NUP54-217ENST00000514987 ATOX1O00244 68 aa9.75□□□□□ -0.85
NUP54-217ENST00000514987 NKAPP1Q8N9T2 125 aa9.75□□□□□ -0.85
NUP54-217ENST00000514987 UPK3BQ9BT76 320 aa9.75□□□□□ -0.85
NUP54-217ENST00000514987 IGKV3D-7A0A0C4DH55 119 aa9.74□□□□□ -0.85
NUP54-217ENST00000514987 B5MCH6 92 aa9.74□□□□□ -0.85
NUP54-217ENST00000514987 LINC00528Q8N1L1 170 aa9.74□□□□□ -0.85
NUP54-217ENST00000514987 KCNQ1DNQ9H478 68 aa9.73□□□□□ -0.85
NUP54-217ENST00000514987 IGLV5-37A0A075B6J1 123 aa9.71□□□□□ -0.85
NUP54-217ENST00000514987 USP17L23D6RBM5 183 aa9.71□□□□□ -0.85
NUP54-217ENST00000514987 UQCRQO14949 82 aa9.71□□□□□ -0.86
NUP54-217ENST00000514987 STAB1Q9NY15 2570 aa9.7□□□□□ -0.86
NUP54-217ENST00000514987 PRB2P02812 416 aaPredicted RBP9.7□□□□□ -0.86
NUP54-217ENST00000514987 FBN1P35555 2871 aaKnown RBP9.7□□□□□ -0.86
NUP54-217ENST00000514987 C3orf22Q8N5N4 141 aa9.69□□□□□ -0.86
NUP54-217ENST00000514987 TRBV7-4A0A0J9YYF1 115 aa9.68□□□□□ -0.86
NUP54-217ENST00000514987 C7orf33Q8WU49 177 aa9.68□□□□□ -0.86
NUP54-217ENST00000514987 MAST4O15021 2626 aa9.68□□□□□ -0.86
NUP54-217ENST00000514987 DNAH3Q8TD57 4116 aa9.68□□□□□ -0.86
NUP54-217ENST00000514987 TENM3Q9P273 2699 aa9.67□□□□□ -0.86
NUP54-217ENST00000514987 PRYO14603 147 aa9.67□□□□□ -0.86
NUP54-217ENST00000514987 COX7CP15954 63 aa9.67□□□□□ -0.86
NUP54-217ENST00000514987 LOC107984640A0A0U1RRK4 108 aa9.66□□□□□ -0.86
NUP54-217ENST00000514987 SERTAD4-AS1Q5TG53 156 aa9.66□□□□□ -0.86
NUP54-217ENST00000514987 DHRS4-AS1Q9P1J3 65 aa9.66□□□□□ -0.86
NUP54-217ENST00000514987 CMYA5Q8N3K9 4069 aa9.66□□□□□ -0.86
NUP54-217ENST00000514987 PKD1L1Q8TDX9 2849 aa9.65□□□□□ -0.87
NUP54-217ENST00000514987 C9orf153Q5TBE3 101 aa9.64□□□□□ -0.87
NUP54-217ENST00000514987 FLNBO75369 2602 aaKnown RBP9.64□□□□□ -0.87
NUP54-217ENST00000514987 BAHCC1Q9P281 2608 aa9.63□□□□□ -0.87
NUP54-217ENST00000514987 IGLV1-50A0A075B6I6 118 aa9.63□□□□□ -0.87
NUP54-217ENST00000514987 CASC10Q5T4H9 136 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms