RNA–Protein interactions for RNA: ENST00000509637.6

RAB40C-202, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 565 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-202ENST00000509637 URB1-AS1Q96HZ7 61 aa9.02□□□□□ -0.97
RAB40C-202ENST00000509637 ZNF625Q96I27 306 aaPredicted RBP9.02□□□□□ -0.97
RAB40C-202ENST00000509637 MRPL18Q9H0U6 180 aaKnown RBP9.02□□□□□ -0.97
RAB40C-202ENST00000509637 TRAPPC1Q9Y5R8 145 aa9.02□□□□□ -0.97
RAB40C-202ENST00000509637 CBLN2Q8IUK8 224 aa9.01□□□□□ -0.97
RAB40C-202ENST00000509637 ERG28Q9UKR5 140 aa9.01□□□□□ -0.97
RAB40C-202ENST00000509637 ATP5LO75964 103 aa9□□□□□ -0.97
RAB40C-202ENST00000509637 KRTAP13-3Q3SY46 172 aa9□□□□□ -0.97
RAB40C-202ENST00000509637 YPEL4Q96NS1 127 aa9□□□□□ -0.97
RAB40C-202ENST00000509637 SPRR4Q96PI1 79 aa8.99□□□□□ -0.97
RAB40C-202ENST00000509637 CTAG1AP78358 180 aa8.98□□□□□ -0.97
RAB40C-202ENST00000509637 DAND5Q8N907 189 aa8.98□□□□□ -0.97
RAB40C-202ENST00000509637 HIGD2AQ9BW72 106 aa8.97□□□□□ -0.97
RAB40C-202ENST00000509637 C11orf86A6NJI1 115 aa8.96□□□□□ -0.98
RAB40C-202ENST00000509637 H3BRM9 83 aa8.95□□□□□ -0.98
RAB40C-202ENST00000509637 ASB16-AS1Q495Z4 193 aa8.95□□□□□ -0.98
RAB40C-202ENST00000509637 S100A1P23297 94 aa8.94□□□□□ -0.98
RAB40C-202ENST00000509637 PMCHL1Q16048 86 aa8.94□□□□□ -0.98
RAB40C-202ENST00000509637 FA2HQ7L5A8 372 aa8.94□□□□□ -0.98
RAB40C-202ENST00000509637 NDUFA6P56556 154 aa8.93□□□□□ -0.98
RAB40C-202ENST00000509637 RPL24P83731 157 aaKnown RBP8.93□□□□□ -0.98
RAB40C-202ENST00000509637 LCE2DQ5TA82 110 aaPredicted RBP8.93□□□□□ -0.98
RAB40C-202ENST00000509637 A0A0U1RRA0 63 aa8.92□□□□□ -0.98
RAB40C-202ENST00000509637 LINC01549A6NIU2 74 aa8.92□□□□□ -0.98
RAB40C-202ENST00000509637 KRTAP4-16G5E9R7 235 aaPredicted RBP8.92□□□□□ -0.98
RAB40C-202ENST00000509637 COX17Q14061 63 aa8.92□□□□□ -0.98
RAB40C-202ENST00000509637 Q8NBF4 154 aa8.92□□□□□ -0.98
RAB40C-202ENST00000509637 COLCA2A8K830 154 aa8.91□□□□□ -0.98
RAB40C-202ENST00000509637 LCE2CQ5TA81 110 aa8.91□□□□□ -0.98
RAB40C-202ENST00000509637 SPAG11AQ6PDA7 123 aa8.91□□□□□ -0.98
RAB40C-202ENST00000509637 FP248Q71RG6 208 aaPredicted RBP8.91□□□□□ -0.98
RAB40C-202ENST00000509637 C18orf32Q8TCD1 76 aa8.91□□□□□ -0.98
RAB40C-202ENST00000509637 ATP6V1G1O75348 118 aa8.9□□□□□ -0.98
RAB40C-202ENST00000509637 SPRR1AP35321 89 aa8.9□□□□□ -0.98
RAB40C-202ENST00000509637 SMCR5Q8TEV8 140 aa8.9□□□□□ -0.98
RAB40C-202ENST00000509637 TRGC2P03986 189 aa8.89□□□□□ -0.99
RAB40C-202ENST00000509637 LINC00614P0C842 121 aa8.88□□□□□ -0.99
RAB40C-202ENST00000509637 BAGE3Q86Y29 109 aa8.88□□□□□ -0.99
RAB40C-202ENST00000509637 ERC2-IT1O76042 136 aa8.87□□□□□ -0.99
RAB40C-202ENST00000509637 LINC00158P58513 81 aa8.87□□□□□ -0.99
RAB40C-202ENST00000509637 KRTAP19-2Q3LHN2 52 aa8.87□□□□□ -0.99
RAB40C-202ENST00000509637 TMEM170BQ5T4T1 132 aa8.87□□□□□ -0.99
RAB40C-202ENST00000509637 SMIM13P0DJ93 91 aa8.86□□□□□ -0.99
RAB40C-202ENST00000509637 TMEM223A0PJW6 202 aa8.85□□□□□ -0.99
RAB40C-202ENST00000509637 NCR3O14931 201 aa8.85□□□□□ -0.99
RAB40C-202ENST00000509637 LINC00483Q53H64 154 aa8.85□□□□□ -0.99
RAB40C-202ENST00000509637 LINC00337Q8N6G1 96 aa8.85□□□□□ -0.99
RAB40C-202ENST00000509637 KCNQ1DNQ9H478 68 aa8.85□□□□□ -0.99
RAB40C-202ENST00000509637 HBDP02042 147 aa8.84□□□□□ -0.99
RAB40C-202ENST00000509637 Q8N377 158 aa8.84□□□□□ -0.99
RAB40C-202ENST00000509637 CHCHD1Q96BP2 118 aaKnown RBP8.84□□□□□ -0.99
RAB40C-202ENST00000509637 PRYO14603 147 aa8.83□□□□□ -1
RAB40C-202ENST00000509637 LINC01547P58512 204 aaPredicted RBP8.83□□□□□ -1
RAB40C-202ENST00000509637 CRCT1Q9UGL9 99 aa8.83□□□□□ -1
RAB40C-202ENST00000509637 TRBV10-3A0A0K0K1G6 114 aa8.82□□□□□ -1
RAB40C-202ENST00000509637 SPINK1P00995 79 aa8.82□□□□□ -1
RAB40C-202ENST00000509637 C4orf48Q5BLP8 95 aa8.82□□□□□ -1
RAB40C-202ENST00000509637 BOD1L2Q8IYS8 172 aa8.82□□□□□ -1
RAB40C-202ENST00000509637 HSBP1O75506 76 aa8.81□□□□□ -1
RAB40C-202ENST00000509637 GAGE2AQ6NT46 116 aa8.81□□□□□ -1
RAB40C-202ENST00000509637 MIR7-3HGQ8N6C7 128 aa8.81□□□□□ -1
RAB40C-202ENST00000509637 CHTOPQ9Y3Y2 248 aaKnown RBP8.81□□□□□ -1
RAB40C-202ENST00000509637 B5MCH6 92 aa8.8□□□□□ -1
RAB40C-202ENST00000509637 Q9BRP9 147 aa8.8□□□□□ -1
RAB40C-202ENST00000509637 ZNF706Q9Y5V0 76 aaPredicted RBP8.8□□□□□ -1
RAB40C-202ENST00000509637 MOBPQ13875 183 aa8.79□□□□□ -1
RAB40C-202ENST00000509637 XP32Q5T750 250 aa8.79□□□□□ -1
RAB40C-202ENST00000509637 SEC61BP60468 96 aaKnown RBP8.78□□□□□ -1
RAB40C-202ENST00000509637 IGLV9-49A0A0B4J1Y8 123 aa8.77□□□□□ -1.01
RAB40C-202ENST00000509637 SFTA2Q6UW10 78 aa8.77□□□□□ -1.01
RAB40C-202ENST00000509637 FSIP2Q5CZC0 6907 aa8.77□□□□□ -1.01
RAB40C-202ENST00000509637 ETDCA0A1B0GVM5 59 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST1H2BKO60814 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 SERF1AO75920 110 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST1H2BJP06899 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST1H2BOP23527 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST1H2BBP33778 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST1H2BDP58876 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 TSPEAR-AS2P59090 65 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST1H2BCP62807 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST2H2BEQ16778 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST1H2BHQ93079 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST1H2BNQ99877 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 HIST1H2BMQ99879 126 aa8.76□□□□□ -1.01
RAB40C-202ENST00000509637 TRAV12-1A0A0B4J245 112 aa8.74□□□□□ -1.01
RAB40C-202ENST00000509637 MT1HP80294 61 aa8.74□□□□□ -1.01
RAB40C-202ENST00000509637 MEIG1Q5JSS6 88 aa8.74□□□□□ -1.01
RAB40C-202ENST00000509637 SSBP3-AS1Q7Z2R9 100 aa8.74□□□□□ -1.01
RAB40C-202ENST00000509637 FAM19A2Q8N3H0 131 aa8.74□□□□□ -1.01
RAB40C-202ENST00000509637 RPS29P62273 56 aaKnown RBP8.73□□□□□ -1.01
RAB40C-202ENST00000509637 IFI27L1Q96BM0 104 aa8.73□□□□□ -1.01
RAB40C-202ENST00000509637 LOC107984156A0A0G2JMH3 177 aa8.72□□□□□ -1.01
RAB40C-202ENST00000509637 EIF4EBP3O60516 100 aaPredicted RBP8.72□□□□□ -1.01
RAB40C-202ENST00000509637 LEPROTL1O95214 131 aa8.72□□□□□ -1.01
RAB40C-202ENST00000509637 LINC00310P59036 64 aa8.72□□□□□ -1.01
RAB40C-202ENST00000509637 ARL17AQ8IVW1 177 aa8.72□□□□□ -1.01
RAB40C-202ENST00000509637 NDUFA12Q9UI09 145 aa8.72□□□□□ -1.01
RAB40C-202ENST00000509637 HSPB8Q9UJY1 196 aa8.71□□□□□ -1.02
RAB40C-202ENST00000509637 ST20-AS1Q8NBB2 130 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms