RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ANKRD39Q53RE8 183 aa6.37□□□□□ -1.39
NUP54-203ENST00000504173 MEIG1Q5JSS6 88 aa6.37□□□□□ -1.39
NUP54-203ENST00000504173 SCXQ7RTU7 201 aa6.37□□□□□ -1.39
NUP54-203ENST00000504173 PKHD1L1Q86WI1 4243 aa6.36□□□□□ -1.39
NUP54-203ENST00000504173 A0A087WYN8 130 aa6.36□□□□□ -1.39
NUP54-203ENST00000504173 IGKV2D-26A0A0A0MRZ7 120 aa6.36□□□□□ -1.39
NUP54-203ENST00000504173 COX17Q14061 63 aa6.36□□□□□ -1.39
NUP54-203ENST00000504173 CIRBP-AS1Q8TBR5 109 aa6.36□□□□□ -1.39
NUP54-203ENST00000504173 A0A0U1RRA0 63 aa6.35□□□□□ -1.39
NUP54-203ENST00000504173 LINC00587B1AMM8 73 aa6.35□□□□□ -1.39
NUP54-203ENST00000504173 LINC00158P58513 81 aa6.35□□□□□ -1.39
NUP54-203ENST00000504173 XAGE1AQ9HD64 81 aa6.35□□□□□ -1.39
NUP54-203ENST00000504173 ZNF815PA8K554 130 aa6.34□□□□□ -1.39
NUP54-203ENST00000504173 SMR3BP02814 79 aaPredicted RBP6.34□□□□□ -1.39
NUP54-203ENST00000504173 SMIM13P0DJ93 91 aa6.34□□□□□ -1.39
NUP54-203ENST00000504173 JOSD1Q15040 202 aaPredicted RBP6.34□□□□□ -1.39
NUP54-203ENST00000504173 C9orf129Q5T035 196 aaKnown RBP6.34□□□□□ -1.39
NUP54-203ENST00000504173 TTTY13Q9BZ97 58 aa6.34□□□□□ -1.39
NUP54-203ENST00000504173 PLAC8Q9NZF1 115 aa6.34□□□□□ -1.39
NUP54-203ENST00000504173 A0A1W2PNN7 141 aa6.33□□□□□ -1.4
NUP54-203ENST00000504173 FAT4Q6V0I7 4981 aa6.32□□□□□ -1.4
NUP54-203ENST00000504173 A0A0J9YXY3 114 aa6.32□□□□□ -1.4
NUP54-203ENST00000504173 FAM168BA1KXE4 195 aa6.32□□□□□ -1.4
NUP54-203ENST00000504173 FAM19A5Q7Z5A7 132 aaPredicted RBP6.32□□□□□ -1.4
NUP54-203ENST00000504173 MIR7-3HGQ8N6C7 128 aa6.32□□□□□ -1.4
NUP54-203ENST00000504173 FAT3Q8TDW7 4589 aa6.32□□□□□ -1.4
NUP54-203ENST00000504173 SCGB1D4Q6XE38 83 aa6.31□□□□□ -1.4
NUP54-203ENST00000504173 PCP2Q8IVA1 136 aa6.31□□□□□ -1.4
NUP54-203ENST00000504173 SND1-IT1Q9HBX3 110 aa6.31□□□□□ -1.4
NUP54-203ENST00000504173 OXTP01178 125 aa6.3□□□□□ -1.4
NUP54-203ENST00000504173 PYY3Q5JQD4 70 aa6.3□□□□□ -1.4
NUP54-203ENST00000504173 VAMP8Q9BV40 100 aa6.3□□□□□ -1.4
NUP54-203ENST00000504173 M0QXV9 152 aa6.29□□□□□ -1.4
NUP54-203ENST00000504173 SPATA45Q537H7 98 aa6.29□□□□□ -1.4
NUP54-203ENST00000504173 LINC00528Q8N1L1 170 aa6.29□□□□□ -1.4
NUP54-203ENST00000504173 DAND5Q8N907 189 aa6.29□□□□□ -1.4
NUP54-203ENST00000504173 C7orf33Q8WU49 177 aa6.29□□□□□ -1.4
NUP54-203ENST00000504173 PAM16Q9Y3D7 125 aa6.29□□□□□ -1.4
NUP54-203ENST00000504173 TIMM17BO60830 172 aa6.28□□□□□ -1.4
NUP54-203ENST00000504173 RPL24P83731 157 aaKnown RBP6.28□□□□□ -1.4
NUP54-203ENST00000504173 PHF5AQ7RTV0 110 aaKnown RBP6.28□□□□□ -1.4
NUP54-203ENST00000504173 KRTAP7-1Q8IUC3 87 aa6.28□□□□□ -1.4
NUP54-203ENST00000504173 NKAPP1Q8N9T2 125 aa6.28□□□□□ -1.4
NUP54-203ENST00000504173 MIEN1Q9BRT3 115 aa6.28□□□□□ -1.4
NUP54-203ENST00000504173 TMEM238C9JI98 176 aa6.27□□□□□ -1.41
NUP54-203ENST00000504173 C4orf48Q5BLP8 95 aa6.27□□□□□ -1.41
NUP54-203ENST00000504173 ADAMTSL4-AS1Q5T5F5 129 aa6.27□□□□□ -1.41
NUP54-203ENST00000504173 BOD1L2Q8IYS8 172 aa6.27□□□□□ -1.41
NUP54-203ENST00000504173 LITAFQ99732 161 aa6.27□□□□□ -1.41
NUP54-203ENST00000504173 C22orf24Q9Y442 160 aa6.27□□□□□ -1.41
NUP54-203ENST00000504173 IGLV5-37A0A075B6J1 123 aa6.26□□□□□ -1.41
NUP54-203ENST00000504173 COX8AP10176 69 aa6.26□□□□□ -1.41
NUP54-203ENST00000504173 VPREB1P12018 145 aa6.26□□□□□ -1.41
NUP54-203ENST00000504173 NPC2P61916 151 aa6.26□□□□□ -1.41
NUP54-203ENST00000504173 LBHQ53QV2 105 aaPredicted RBP6.26□□□□□ -1.41
NUP54-203ENST00000504173 TP73-AS1Q9UF72 201 aa6.26□□□□□ -1.41
NUP54-203ENST00000504173 MUC2Q02817 5179 aa6.25□□□□□ -1.41
NUP54-203ENST00000504173 RPL37AP61513 92 aaKnown RBP6.25□□□□□ -1.41
NUP54-203ENST00000504173 UBE2BP63146 152 aa6.25□□□□□ -1.41
NUP54-203ENST00000504173 MRPL55Q7Z7F7 128 aaKnown RBP6.25□□□□□ -1.41
NUP54-203ENST00000504173 C14orf144Q96I85 54 aa6.25□□□□□ -1.41
NUP54-203ENST00000504173 SPANXDQ9BXN6 97 aa6.25□□□□□ -1.41
NUP54-203ENST00000504173 SPANXCQ9NY87 97 aa6.25□□□□□ -1.41
NUP54-203ENST00000504173 LOC107984156A0A0G2JMH3 177 aa6.24□□□□□ -1.41
NUP54-203ENST00000504173 GAGE10A6NGK3 116 aa6.24□□□□□ -1.41
NUP54-203ENST00000504173 PLA2G1BP04054 148 aaKnown RBP6.24□□□□□ -1.41
NUP54-203ENST00000504173 S100A12P80511 92 aa6.24□□□□□ -1.41
NUP54-203ENST00000504173 SOSTDC1Q6X4U4 206 aa6.24□□□□□ -1.41
NUP54-203ENST00000504173 ARL17AQ8IVW1 177 aa6.24□□□□□ -1.41
NUP54-203ENST00000504173 Q8NDZ9 215 aa6.24□□□□□ -1.41
NUP54-203ENST00000504173 LINC00308Q8TCZ7 52 aa6.24□□□□□ -1.41
NUP54-203ENST00000504173 NCR3O14931 201 aa6.23□□□□□ -1.41
NUP54-203ENST00000504173 DLEU1O43261 78 aa6.23□□□□□ -1.41
NUP54-203ENST00000504173 COPS9Q8WXC6 57 aa6.23□□□□□ -1.41
NUP54-203ENST00000504173 LINC00167Q96N53 147 aa6.23□□□□□ -1.41
NUP54-203ENST00000504173 LOC105371267A0A1B0GV96 52 aa6.22□□□□□ -1.41
NUP54-203ENST00000504173 RPL37AP8A6NKH3 93 aa6.22□□□□□ -1.41
NUP54-203ENST00000504173 M0R378 163 aa6.22□□□□□ -1.41
NUP54-203ENST00000504173 EIF4EBP3O60516 100 aaPredicted RBP6.22□□□□□ -1.41
NUP54-203ENST00000504173 LORP23490 312 aaPredicted RBP6.22□□□□□ -1.41
NUP54-203ENST00000504173 SRSF9Q13242 221 aaKnown RBP eCLIP6.22□□□□□ -1.41
NUP54-203ENST00000504173 SLC25A34Q6PIV7 304 aa6.22□□□□□ -1.41
NUP54-203ENST00000504173 Q6ZVH6 145 aa6.22□□□□□ -1.41
NUP54-203ENST00000504173 TNXBP22105 4242 aa6.21□□□□□ -1.41
NUP54-203ENST00000504173 NDUFC2O95298 119 aa6.21□□□□□ -1.42
NUP54-203ENST00000504173 SMIM6P0DI80 62 aa6.21□□□□□ -1.42
NUP54-203ENST00000504173 IFITM1P13164 125 aa6.21□□□□□ -1.42
NUP54-203ENST00000504173 PRR3P79522 188 aaKnown RBP6.21□□□□□ -1.42
NUP54-203ENST00000504173 SPANXB1Q9NS25 103 aaPredicted RBP6.21□□□□□ -1.42
NUP54-203ENST00000504173 PSORS1C2Q9UIG4 136 aa6.21□□□□□ -1.42
NUP54-203ENST00000504173 IGKV2-28A0A075B6P5 120 aa6.2□□□□□ -1.42
NUP54-203ENST00000504173 IGKV2D-28P01615 120 aa6.2□□□□□ -1.42
NUP54-203ENST00000504173 C1orf137Q5JT78 98 aa6.2□□□□□ -1.42
NUP54-203ENST00000504173 KRTAP11-1Q8IUC1 163 aa6.2□□□□□ -1.42
NUP54-203ENST00000504173 TRBV10-2A0A0K0K1G8 114 aa6.19□□□□□ -1.42
NUP54-203ENST00000504173 MUSTN1Q8IVN3 82 aa6.19□□□□□ -1.42
NUP54-203ENST00000504173 PPDPFQ9H3Y8 114 aa6.19□□□□□ -1.42
NUP54-203ENST00000504173 IGLV1-50A0A075B6I6 118 aa6.18□□□□□ -1.42
NUP54-203ENST00000504173 KRTAP10-4P60372 401 aaPredicted RBP6.18□□□□□ -1.42
NUP54-203ENST00000504173 S100A7L2Q5SY68 101 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms