RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 NDUFA1O15239 70 aa7.88□□□□□ -1.15
UPF3A-210ENST00000493727 TSPEAR-AS2P59090 65 aa7.88□□□□□ -1.15
UPF3A-210ENST00000493727 C2orf48Q96LS8 159 aa7.88□□□□□ -1.15
UPF3A-210ENST00000493727 IGKV2D-26A0A0A0MRZ7 120 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 F8WDY8 70 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 HAMPP81172 84 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 KIAA0087Q14695 138 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 NDUFA12Q9UI09 145 aa7.87□□□□□ -1.15
UPF3A-210ENST00000493727 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.86□□□□□ -1.15
UPF3A-210ENST00000493727 MYMXA0A1B0GTQ4 84 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 ZNF815PA8K554 130 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 SYCNQ0VAF6 134 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 SFTA2Q6UW10 78 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 C2orf82Q6UX34 121 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 CARD19Q96LW7 228 aa7.86□□□□□ -1.15
UPF3A-210ENST00000493727 PKHD1L1Q86WI1 4243 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 MEIG1Q5JSS6 88 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 UNQ6190/PRO20217Q6UXQ8 127 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 Q6ZRU5 148 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 Q6ZSA8 131 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 ZNF625Q96I27 306 aaPredicted RBP7.84□□□□□ -1.15
UPF3A-210ENST00000493727 TTTY13Q9BZ97 58 aa7.84□□□□□ -1.15
UPF3A-210ENST00000493727 TRBV30A0A0K0K1B3 111 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 HERV-K104P63124 156 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 C10orf25Q5T742 122 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 SCGB1D4Q6XE38 83 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 PCP2Q8IVA1 136 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 C12orf57Q99622 126 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 PKIGQ9Y2B9 76 aa7.83□□□□□ -1.16
UPF3A-210ENST00000493727 KRTAP29-1A8MX34 341 aaPredicted RBP7.82□□□□□ -1.16
UPF3A-210ENST00000493727 CNBPP62633 177 aaKnown RBP7.82□□□□□ -1.16
UPF3A-210ENST00000493727 C14orf144Q96I85 54 aa7.82□□□□□ -1.16
UPF3A-210ENST00000493727 C6orf48Q9UBA6 75 aa7.82□□□□□ -1.16
UPF3A-210ENST00000493727 COX8AP10176 69 aa7.81□□□□□ -1.16
UPF3A-210ENST00000493727 LINC00587B1AMM8 73 aa7.8□□□□□ -1.16
UPF3A-210ENST00000493727 PFN2P35080 140 aa7.8□□□□□ -1.16
UPF3A-210ENST00000493727 C9orf116Q5BN46 136 aaPredicted RBP7.8□□□□□ -1.16
UPF3A-210ENST00000493727 SLC25A34Q6PIV7 304 aa7.8□□□□□ -1.16
UPF3A-210ENST00000493727 ERG28Q9UKR5 140 aa7.8□□□□□ -1.16
UPF3A-210ENST00000493727 A0A0J9YXY3 114 aa7.79□□□□□ -1.16
UPF3A-210ENST00000493727 A0A0U1RRA0 63 aa7.79□□□□□ -1.16
UPF3A-210ENST00000493727 LINC00158P58513 81 aa7.79□□□□□ -1.16
UPF3A-210ENST00000493727 RPL18AQ02543 176 aaKnown RBP7.79□□□□□ -1.16
UPF3A-210ENST00000493727 CIRBPQ14011 172 aaKnown RBP7.79□□□□□ -1.16
UPF3A-210ENST00000493727 LINC00518Q8N0U6 118 aa7.79□□□□□ -1.16
UPF3A-210ENST00000493727 SMIM13P0DJ93 91 aa7.78□□□□□ -1.16
UPF3A-210ENST00000493727 BOD1L2Q8IYS8 172 aa7.78□□□□□ -1.16
UPF3A-210ENST00000493727 PRO1933Q9H354 126 aa7.78□□□□□ -1.16
UPF3A-210ENST00000493727 LOC107984640A0A0U1RRK4 108 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 DLEU1O43261 78 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 COX17Q14061 63 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 C9orf163Q8N9P6 203 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 UQCR10Q9UDW1 63 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 TP73-AS1Q9UF72 201 aa7.77□□□□□ -1.17
UPF3A-210ENST00000493727 TMEM238C9JI98 176 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 NDUFC2-KCTD14E9PQ53 114 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 TSTD3H0UI37 97 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 LINC01620Q4KN68 170 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 GAGE2EQ4V326 116 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 SCXQ7RTU7 201 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 GAGE2DQ9UEU5 116 aa7.76□□□□□ -1.17
UPF3A-210ENST00000493727 TIMM17BO60830 172 aa7.75□□□□□ -1.17
UPF3A-210ENST00000493727 GAGE2BQ13066 116 aa7.75□□□□□ -1.17
UPF3A-210ENST00000493727 SERTAD4-AS1Q5TG53 156 aa7.75□□□□□ -1.17
UPF3A-210ENST00000493727 MIR7-3HGQ8N6C7 128 aa7.75□□□□□ -1.17
UPF3A-210ENST00000493727 IGKV2-24A0A0C4DH68 120 aa7.74□□□□□ -1.17
UPF3A-210ENST00000493727 TLX1NBP0CAT3 122 aa7.74□□□□□ -1.17
UPF3A-210ENST00000493727 DAND5Q8N907 189 aa7.74□□□□□ -1.17
UPF3A-210ENST00000493727 MIEN1Q9BRT3 115 aa7.74□□□□□ -1.17
UPF3A-210ENST00000493727 HNRNPA3P51991 378 aaKnown RBP7.73□□□□□ -1.17
UPF3A-210ENST00000493727 SRSF9Q13242 221 aaKnown RBP eCLIP7.73□□□□□ -1.17
UPF3A-210ENST00000493727 Q6ZRP5 223 aa7.73□□□□□ -1.17
UPF3A-210ENST00000493727 KRTAP10-4P60372 401 aaPredicted RBP7.72□□□□□ -1.17
UPF3A-210ENST00000493727 NPC2P61916 151 aa7.72□□□□□ -1.17
UPF3A-210ENST00000493727 CIRBP-AS1Q8TBR5 109 aa7.72□□□□□ -1.17
UPF3A-210ENST00000493727 COPS9Q8WXC6 57 aa7.72□□□□□ -1.17
UPF3A-210ENST00000493727 LINC00474Q9P2X8 69 aa7.72□□□□□ -1.17
UPF3A-210ENST00000493727 TNXBP22105 4242 aa7.71□□□□□ -1.17
UPF3A-210ENST00000493727 A0A096LNI7 61 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 ADAMTSL4-AS1Q5T5F5 129 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 HIST1H4GQ99525 98 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 LITAFQ99732 161 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 SPANXDQ9BXN6 97 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 SND1-IT1Q9HBX3 110 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 XAGE1AQ9HD64 81 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 SPANXCQ9NY87 97 aa7.71□□□□□ -1.18
UPF3A-210ENST00000493727 SDIM1Q6ZPB5 146 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 C2orf91Q6ZV80 131 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 Q6ZVH6 145 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 DPH3Q96FX2 82 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 SPANXB1Q9NS25 103 aaPredicted RBP7.7□□□□□ -1.18
UPF3A-210ENST00000493727 HIGD1BQ9P298 99 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 LRP2P98164 4655 aa7.7□□□□□ -1.18
UPF3A-210ENST00000493727 OXTP01178 125 aa7.69□□□□□ -1.18
UPF3A-210ENST00000493727 CHTF8P0CG12 524 aa7.69□□□□□ -1.18
UPF3A-210ENST00000493727 RNF213Q63HN8 5207 aa7.68□□□□□ -1.18
UPF3A-210ENST00000493727 IFITM1P13164 125 aa7.68□□□□□ -1.18
UPF3A-210ENST00000493727 SVIPQ8NHG7 77 aa7.68□□□□□ -1.18
UPF3A-210ENST00000493727 LINC00308Q8TCZ7 52 aa7.68□□□□□ -1.18
UPF3A-210ENST00000493727 HSD52Q0P140 79 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms