RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525		M0QXV9	152 aa		3.16	□□□□□ -1.9
HDAC6-223	ENST00000480525	LGALS3	P17931	250 aa	Known RBP	3.16	□□□□□ -1.9
HDAC6-223	ENST00000480525	SRSF9	Q13242	221 aa	Known RBP eCLIP	3.16	□□□□□ -1.9
HDAC6-223	ENST00000480525	MRPL55	Q7Z7F7	128 aa	Known RBP	3.16	□□□□□ -1.9
HDAC6-223	ENST00000480525	KRTAP7-1	Q8IUC3	87 aa		3.16	□□□□□ -1.9
HDAC6-223	ENST00000480525	SND1-IT1	Q9HBX3	110 aa		3.16	□□□□□ -1.9
HDAC6-223	ENST00000480525	PKHD1L1	Q86WI1	4243 aa		3.16	□□□□□ -1.9
HDAC6-223	ENST00000480525	VPREB1	P12018	145 aa		3.15	□□□□□ -1.91
HDAC6-223	ENST00000480525	BOD1L2	Q8IYS8	172 aa		3.15	□□□□□ -1.91
HDAC6-223	ENST00000480525	DPH3	Q96FX2	82 aa		3.15	□□□□□ -1.91
HDAC6-223	ENST00000480525	KRTAP17-1	Q9BYP8	105 aa		3.15	□□□□□ -1.91
HDAC6-223	ENST00000480525	IGLV1-50	A0A075B6I6	118 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	TMEM238	C9JI98	176 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	DLEU1	O43261	78 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	INAFM2	P0DMQ5	153 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	IFITM1	P13164	125 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	SPRR1A	P35321	89 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	TSPEAR-AS2	P59090	65 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	KRTDAP	P60985	99 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	GAGE2E	Q4V326	116 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	SPANXD	Q9BXN6	97 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	SPANXC	Q9NY87	97 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	GAGE2D	Q9UEU5	116 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	C22orf24	Q9Y442	160 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	MYCBP2	O75592	4640 aa		3.14	□□□□□ -1.91
HDAC6-223	ENST00000480525	HSBP1L1	C9JCN9	74 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525		H0Y8G0	127 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525		M0R378	163 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	SMR3B	P02814	79 aa	Predicted RBP	3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	IGLV7-43	P04211	117 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	PFN2	P35080	140 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	LINC00158	P58513	81 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	S100A12	P80511	92 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	JOSD1	Q15040	202 aa	Predicted RBP	3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	SERTAD4-AS1	Q5TG53	156 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	KRTAP13-1	Q8IUC0	172 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	LINC00518	Q8N0U6	118 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	MIR7-3HG	Q8N6C7	128 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	LINC00337	Q8N6G1	96 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	NKAPP1	Q8N9T2	125 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	LITAF	Q99732	161 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	MIEN1	Q9BRT3	115 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	KRTAP4-5	Q9BYR2	181 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	KCNQ1DN	Q9H478	68 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	XAGE1A	Q9HD64	81 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	SPANXB1	Q9NS25	103 aa	Predicted RBP	3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	PSORS1C2	Q9UIG4	136 aa		3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	TMA7	Q9Y2S6	64 aa	Known RBP	3.13	□□□□□ -1.91
HDAC6-223	ENST00000480525	FAM168B	A1KXE4	195 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	ZNF815P	A8K554	130 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	PRY	O14603	147 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	ZNF861P	O60384	105 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	BCE1	O60756	84 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	IGLV6-57	P01721	117 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	SMIM13	P0DJ93	91 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	REG3G	Q6UW15	175 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	PHF5A	Q7RTV0	110 aa	Known RBP	3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	DIRC1	Q969H9	104 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	LINC01600	Q96MT4	127 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	PMCHL2	Q9BQD1	86 aa		3.12	□□□□□ -1.91
HDAC6-223	ENST00000480525	TRBV7-6	A0A0J9YX20	115 aa		3.11	□□□□□ -1.91
HDAC6-223	ENST00000480525	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	3.11	□□□□□ -1.91
HDAC6-223	ENST00000480525	RPL28	P46779	137 aa	Known RBP	3.11	□□□□□ -1.91
HDAC6-223	ENST00000480525	UBE2B	P63146	152 aa		3.11	□□□□□ -1.91
HDAC6-223	ENST00000480525	LINC00167	Q96N53	147 aa		3.11	□□□□□ -1.91
HDAC6-223	ENST00000480525	HIGD1B	Q9P298	99 aa		3.11	□□□□□ -1.91
HDAC6-223	ENST00000480525	COX8A	P10176	69 aa		3.1	□□□□□ -1.91
HDAC6-223	ENST00000480525	RPL13A	P40429	203 aa	Known RBP	3.1	□□□□□ -1.91
HDAC6-223	ENST00000480525	HNRNPA3	P51991	378 aa	Known RBP	3.1	□□□□□ -1.91
HDAC6-223	ENST00000480525	HAMP	P81172	84 aa		3.1	□□□□□ -1.91
HDAC6-223	ENST00000480525	FAM229B	Q4G0N7	80 aa		3.1	□□□□□ -1.91
HDAC6-223	ENST00000480525	ANKRD39	Q53RE8	183 aa		3.1	□□□□□ -1.91
HDAC6-223	ENST00000480525	C1orf137	Q5JT78	98 aa		3.1	□□□□□ -1.91
HDAC6-223	ENST00000480525	LINC00308	Q8TCZ7	52 aa		3.1	□□□□□ -1.91
HDAC6-223	ENST00000480525	TMEM126A	Q9H061	195 aa		3.1	□□□□□ -1.91
HDAC6-223	ENST00000480525	TAL2	Q16559	108 aa		3.09	□□□□□ -1.91
HDAC6-223	ENST00000480525	ADAMTSL4-AS1	Q5T5F5	129 aa		3.09	□□□□□ -1.91
HDAC6-223	ENST00000480525	SCGB1D4	Q6XE38	83 aa		3.09	□□□□□ -1.91
HDAC6-223	ENST00000480525	KRTAP11-1	Q8IUC1	163 aa		3.09	□□□□□ -1.91
HDAC6-223	ENST00000480525	FAT3	Q8TDW7	4589 aa		3.09	□□□□□ -1.92
HDAC6-223	ENST00000480525		A4D1N5	150 aa		3.08	□□□□□ -1.92
HDAC6-223	ENST00000480525	SCGB1D1	O95968	90 aa		3.08	□□□□□ -1.92
HDAC6-223	ENST00000480525	KRTAP1-4	P0C5Y4	121 aa		3.08	□□□□□ -1.92
HDAC6-223	ENST00000480525	SOSTDC1	Q6X4U4	206 aa		3.08	□□□□□ -1.92
HDAC6-223	ENST00000480525		Q6ZRX8	168 aa		3.08	□□□□□ -1.92
HDAC6-223	ENST00000480525	PCP2	Q8IVA1	136 aa		3.08	□□□□□ -1.92
HDAC6-223	ENST00000480525		Q8NDZ9	215 aa		3.08	□□□□□ -1.92
HDAC6-223	ENST00000480525	ZNF706	Q9Y5V0	76 aa	Predicted RBP	3.08	□□□□□ -1.92
HDAC6-223	ENST00000480525	LRP1	Q07954	4544 aa	Known RBP	3.08	□□□□□ -1.92
HDAC6-223	ENST00000480525	TNXB	P22105	4242 aa		3.07	□□□□□ -1.92
HDAC6-223	ENST00000480525	TRAV13-2	A0A0B4J235	113 aa		3.07	□□□□□ -1.92
HDAC6-223	ENST00000480525	TRBV10-3	A0A0K0K1G6	114 aa		3.07	□□□□□ -1.92
HDAC6-223	ENST00000480525	MT1HL1	P0DM35	61 aa		3.07	□□□□□ -1.92
HDAC6-223	ENST00000480525	DDT	P30046	118 aa		3.07	□□□□□ -1.92
HDAC6-223	ENST00000480525	KRTAP10-8	P60410	259 aa		3.07	□□□□□ -1.92
HDAC6-223	ENST00000480525	VAMP8	Q9BV40	100 aa		3.07	□□□□□ -1.92
HDAC6-223	ENST00000480525	IGKV2-28	A0A075B6P5	120 aa		3.06	□□□□□ -1.92
HDAC6-223	ENST00000480525	TRAV23DV6	A0A075B6W5	121 aa		3.06	□□□□□ -1.92
HDAC6-223	ENST00000480525	ZNF73	O43830	326 aa	Predicted RBP	3.06	□□□□□ -1.92

Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms