RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 KRTAP13-1Q8IUC0 172 aa9.85□□□□□ -0.83
VIM-204ENST00000478746 FAM19A2Q8N3H0 131 aa9.85□□□□□ -0.83
VIM-204ENST00000478746 AMELXQ99217 191 aa9.85□□□□□ -0.83
VIM-204ENST00000478746 GAGE10A6NGK3 116 aa9.84□□□□□ -0.83
VIM-204ENST00000478746 PDZD11Q5EBL8 140 aa9.84□□□□□ -0.83
VIM-204ENST00000478746 F8VRH5 84 aa9.83□□□□□ -0.84
VIM-204ENST00000478746 ATP5LO75964 103 aa9.83□□□□□ -0.84
VIM-204ENST00000478746 FAM19A3Q7Z5A8 133 aa9.83□□□□□ -0.84
VIM-204ENST00000478746 LINC00337Q8N6G1 96 aa9.83□□□□□ -0.84
VIM-204ENST00000478746 COA6Q5JTJ3 125 aaKnown RBP9.82□□□□□ -0.84
VIM-204ENST00000478746 HERVK_113P63121 156 aa9.81□□□□□ -0.84
VIM-204ENST00000478746 SEC11AP67812 179 aa9.81□□□□□ -0.84
VIM-204ENST00000478746 LEPROTL1O95214 131 aa9.8□□□□□ -0.84
VIM-204ENST00000478746 ASB16-AS1Q495Z4 193 aa9.8□□□□□ -0.84
VIM-204ENST00000478746 CDKN2A-AS1Q9UH64 79 aa9.8□□□□□ -0.84
VIM-204ENST00000478746 S100A6P06703 90 aa9.79□□□□□ -0.84
VIM-204ENST00000478746 CXCL5P42830 114 aa9.79□□□□□ -0.84
VIM-204ENST00000478746 IFI27L1Q96BM0 104 aa9.79□□□□□ -0.84
VIM-204ENST00000478746 GEMIN7Q9H840 131 aaKnown RBP9.79□□□□□ -0.84
VIM-204ENST00000478746 FABP4P15090 132 aa9.78□□□□□ -0.84
VIM-204ENST00000478746 PMVKQ15126 192 aa9.78□□□□□ -0.84
VIM-204ENST00000478746 FP248Q71RG6 208 aaPredicted RBP9.78□□□□□ -0.84
VIM-204ENST00000478746 NKAPP1Q8N9T2 125 aa9.78□□□□□ -0.84
VIM-204ENST00000478746 HSPB8Q9UJY1 196 aa9.78□□□□□ -0.84
VIM-204ENST00000478746 IGLV5-37A0A075B6J1 123 aa9.77□□□□□ -0.85
VIM-204ENST00000478746 SPAG11AQ6PDA7 123 aa9.77□□□□□ -0.85
VIM-204ENST00000478746 KRTAP4-1Q9BYQ7 146 aa9.77□□□□□ -0.85
VIM-204ENST00000478746 CST9LQ9H4G1 147 aa9.77□□□□□ -0.85
VIM-204ENST00000478746 C3orf22Q8N5N4 141 aa9.76□□□□□ -0.85
VIM-204ENST00000478746 IGKV2-28A0A075B6P5 120 aa9.75□□□□□ -0.85
VIM-204ENST00000478746 IGKV2D-28P01615 120 aa9.75□□□□□ -0.85
VIM-204ENST00000478746 SEC61BP60468 96 aaKnown RBP9.74□□□□□ -0.85
VIM-204ENST00000478746 PRLHP81277 87 aa9.74□□□□□ -0.85
VIM-204ENST00000478746 KRTAP13-3Q3SY46 172 aa9.74□□□□□ -0.85
VIM-204ENST00000478746 SMIM1B2RUZ4 78 aa9.73□□□□□ -0.85
VIM-204ENST00000478746 H0Y8G0 127 aa9.73□□□□□ -0.85
VIM-204ENST00000478746 S100A2P29034 98 aa9.73□□□□□ -0.85
VIM-204ENST00000478746 FAM19A1Q7Z5A9 133 aa9.73□□□□□ -0.85
VIM-204ENST00000478746 COX7B2Q8TF08 81 aa9.73□□□□□ -0.85
VIM-204ENST00000478746 PLEKHB2Q96CS7 222 aa9.73□□□□□ -0.85
VIM-204ENST00000478746 MAP1LC3CQ9BXW4 147 aa9.73□□□□□ -0.85
VIM-204ENST00000478746 TRAV12-1A0A0B4J245 112 aa9.72□□□□□ -0.85
VIM-204ENST00000478746 C4orf48Q5BLP8 95 aa9.72□□□□□ -0.85
VIM-204ENST00000478746 TINCRA0A1B0GVN0 87 aa9.71□□□□□ -0.86
VIM-204ENST00000478746 SNRPEP62304 92 aaKnown RBP9.71□□□□□ -0.86
VIM-204ENST00000478746 HIST3H2BBQ8N257 126 aa9.71□□□□□ -0.86
VIM-204ENST00000478746 CHTOPQ9Y3Y2 248 aaKnown RBP9.71□□□□□ -0.86
VIM-204ENST00000478746 IGLC3P0DOY3 106 aa9.69□□□□□ -0.86
VIM-204ENST00000478746 TMEM126AQ9H061 195 aa9.69□□□□□ -0.86
VIM-204ENST00000478746 TMA7Q9Y2S6 64 aaKnown RBP9.69□□□□□ -0.86
VIM-204ENST00000478746 C5orf52A6NGY3 159 aa9.68□□□□□ -0.86
VIM-204ENST00000478746 TMEM238C9JI98 176 aa9.68□□□□□ -0.86
VIM-204ENST00000478746 SYS1-DBNDD2H3BUS1 97 aa9.67□□□□□ -0.86
VIM-204ENST00000478746 KRTDAPP60985 99 aa9.67□□□□□ -0.86
VIM-204ENST00000478746 HIST1H2BLQ99880 126 aa9.67□□□□□ -0.86
VIM-204ENST00000478746 IGLV5-45A0A087WSX0 123 aa9.66□□□□□ -0.86
VIM-204ENST00000478746 C11orf86A6NJI1 115 aa9.66□□□□□ -0.86
VIM-204ENST00000478746 H3BRM9 83 aa9.66□□□□□ -0.86
VIM-204ENST00000478746 C3orf79P0CE67 100 aa9.66□□□□□ -0.86
VIM-204ENST00000478746 PET117Q6UWS5 81 aa9.66□□□□□ -0.86
VIM-204ENST00000478746 SPINK8P0C7L1 97 aa9.65□□□□□ -0.86
VIM-204ENST00000478746 M0R378 163 aa9.64□□□□□ -0.87
VIM-204ENST00000478746 DPM2O94777 84 aa9.64□□□□□ -0.87
VIM-204ENST00000478746 ZNF22P17026 224 aaPredicted RBP9.64□□□□□ -0.87
VIM-204ENST00000478746 PLNP26678 52 aa9.64□□□□□ -0.87
VIM-204ENST00000478746 TMEM170BQ5T4T1 132 aa9.64□□□□□ -0.87
VIM-204ENST00000478746 PMCHL2Q9BQD1 86 aa9.64□□□□□ -0.87
VIM-204ENST00000478746 HIGD2AQ9BW72 106 aa9.64□□□□□ -0.87
VIM-204ENST00000478746 C20orf202A1L168 122 aa9.62□□□□□ -0.87
VIM-204ENST00000478746 VPREB1P12018 145 aa9.62□□□□□ -0.87
VIM-204ENST00000478746 PFN2P35080 140 aa9.62□□□□□ -0.87
VIM-204ENST00000478746 LCE2CQ5TA81 110 aa9.62□□□□□ -0.87
VIM-204ENST00000478746 DAND5Q8N907 189 aa9.62□□□□□ -0.87
VIM-204ENST00000478746 Q8NBF4 154 aa9.62□□□□□ -0.87
VIM-204ENST00000478746 IGKCP01834 107 aa9.61□□□□□ -0.87
VIM-204ENST00000478746 LINC01545Q5VT33 79 aa9.61□□□□□ -0.87
VIM-204ENST00000478746 SPRR4Q96PI1 79 aa9.61□□□□□ -0.87
VIM-204ENST00000478746 SPINK1P00995 79 aa9.6□□□□□ -0.87
VIM-204ENST00000478746 RPL24P83731 157 aaKnown RBP9.6□□□□□ -0.87
VIM-204ENST00000478746 SND1-IT1Q9HBX3 110 aa9.59□□□□□ -0.87
VIM-204ENST00000478746 NDUFA12Q9UI09 145 aa9.58□□□□□ -0.88
VIM-204ENST00000478746 ZNF706Q9Y5V0 76 aaPredicted RBP9.58□□□□□ -0.88
VIM-204ENST00000478746 TMEM223A0PJW6 202 aa9.57□□□□□ -0.88
VIM-204ENST00000478746 AKR1D1P51857 326 aa9.57□□□□□ -0.88
VIM-204ENST00000478746 HERVK_113P61574 105 aa9.57□□□□□ -0.88
VIM-204ENST00000478746 IGLV5-39A0A0G2JS06 123 aa9.56□□□□□ -0.88
VIM-204ENST00000478746 CFC1BP0CG36 223 aa9.56□□□□□ -0.88
VIM-204ENST00000478746 ERG28Q9UKR5 140 aa9.56□□□□□ -0.88
VIM-204ENST00000478746 MT1HP80294 61 aa9.54□□□□□ -0.88
VIM-204ENST00000478746 COX17Q14061 63 aa9.54□□□□□ -0.88
VIM-204ENST00000478746 XP32Q5T750 250 aa9.54□□□□□ -0.88
VIM-204ENST00000478746 SCGB1D1O95968 90 aa9.53□□□□□ -0.88
VIM-204ENST00000478746 Q8NDZ9 215 aa9.53□□□□□ -0.88
VIM-204ENST00000478746 KRTAP19-2Q3LHN2 52 aa9.52□□□□□ -0.89
VIM-204ENST00000478746 ATOH7Q8N100 152 aa9.52□□□□□ -0.89
VIM-204ENST00000478746 ZNF625Q96I27 306 aaPredicted RBP9.52□□□□□ -0.89
VIM-204ENST00000478746 LEPROTO15243 131 aa9.51□□□□□ -0.89
VIM-204ENST00000478746 Q8N377 158 aa9.5□□□□□ -0.89
VIM-204ENST00000478746 E9PLD3 99 aa9.49□□□□□ -0.89
VIM-204ENST00000478746 LGALS3P17931 250 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms