RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 NCR3O14931 201 aa6.65□□□□□ -1.34
HDAC3-205ENST00000469550 PAX4O43316 350 aa6.65□□□□□ -1.34
HDAC3-205ENST00000469550 SS18Q15532 418 aa6.65□□□□□ -1.34
HDAC3-205ENST00000469550 CASC10Q5T4H9 136 aa6.65□□□□□ -1.34
HDAC3-205ENST00000469550 CYSTM1Q9H1C7 97 aa6.65□□□□□ -1.34
HDAC3-205ENST00000469550 SACSQ9NZJ4 4579 aa6.64□□□□□ -1.35
HDAC3-205ENST00000469550 A0A087WVE0 104 aa6.64□□□□□ -1.35
HDAC3-205ENST00000469550 DNAH1Q9P2D7 4330 aa6.63□□□□□ -1.35
HDAC3-205ENST00000469550 TRBV6-8A0A0A6YYG3 113 aa6.62□□□□□ -1.35
HDAC3-205ENST00000469550 TMEM256-PLSCR3K7ERE1 68 aa6.62□□□□□ -1.35
HDAC3-205ENST00000469550 NDUFC2O95298 119 aa6.62□□□□□ -1.35
HDAC3-205ENST00000469550 CMC4P56277 68 aaPredicted RBP6.62□□□□□ -1.35
HDAC3-205ENST00000469550 C16orf74Q96GX8 76 aa6.62□□□□□ -1.35
HDAC3-205ENST00000469550 TM2D3Q9BRN9 247 aa6.62□□□□□ -1.35
HDAC3-205ENST00000469550 NOP10Q9NPE3 64 aaKnown RBP6.62□□□□□ -1.35
HDAC3-205ENST00000469550 IGLV4-60A0A075B6I1 120 aa6.62□□□□□ -1.35
HDAC3-205ENST00000469550 BCE1O60756 84 aa6.62□□□□□ -1.35
HDAC3-205ENST00000469550 PFN2P35080 140 aa6.62□□□□□ -1.35
HDAC3-205ENST00000469550 LCE6AA0A183 80 aa6.61□□□□□ -1.35
HDAC3-205ENST00000469550 PLAC8L1A1L4L8 177 aa6.61□□□□□ -1.35
HDAC3-205ENST00000469550 SLPIP03973 132 aa6.61□□□□□ -1.35
HDAC3-205ENST00000469550 Q8N814 137 aa6.61□□□□□ -1.35
HDAC3-205ENST00000469550 KIR2DL5BQ8NHK3 375 aa6.61□□□□□ -1.35
HDAC3-205ENST00000469550 C19orf73Q9NVV2 129 aa6.61□□□□□ -1.35
HDAC3-205ENST00000469550 IGLV1-51P01701 117 aa6.6□□□□□ -1.35
HDAC3-205ENST00000469550 C6orf226Q5I0X4 101 aa6.6□□□□□ -1.35
HDAC3-205ENST00000469550 Q8IZM0 81 aa6.6□□□□□ -1.35
HDAC3-205ENST00000469550 TRGV2A0A075B6R0 118 aa6.6□□□□□ -1.35
HDAC3-205ENST00000469550 LINC00959A0A1B0GUT2 108 aa6.6□□□□□ -1.35
HDAC3-205ENST00000469550 TRGV4A0A0C4DH28 118 aa6.59□□□□□ -1.35
HDAC3-205ENST00000469550 LOC100131303A0A0U1RQF7 123 aa6.59□□□□□ -1.35
HDAC3-205ENST00000469550 NANOS2P60321 138 aaKnown RBP6.59□□□□□ -1.35
HDAC3-205ENST00000469550 IGKV3OR2-268A0A0C4DH90 116 aa6.58□□□□□ -1.36
HDAC3-205ENST00000469550 GHRHP01286 108 aa6.58□□□□□ -1.36
HDAC3-205ENST00000469550 GIG44P09565 113 aaPredicted RBP6.58□□□□□ -1.36
HDAC3-205ENST00000469550 DSCR8Q96T75 97 aa6.58□□□□□ -1.36
HDAC3-205ENST00000469550 OXTP01178 125 aa6.58□□□□□ -1.36
HDAC3-205ENST00000469550 IGHV4-30-4P0DP06 118 aa6.58□□□□□ -1.36
HDAC3-205ENST00000469550 COX17Q14061 63 aa6.58□□□□□ -1.36
HDAC3-205ENST00000469550 FHL2Q14192 279 aa6.58□□□□□ -1.36
HDAC3-205ENST00000469550 UBL5Q9BZL1 73 aa6.58□□□□□ -1.36
HDAC3-205ENST00000469550 TENM2Q9NT68 2774 aa6.58□□□□□ -1.36
HDAC3-205ENST00000469550 A0A1B0GUV1 79 aa6.57□□□□□ -1.36
HDAC3-205ENST00000469550 BIRC6Q9NR09 4857 aa6.56□□□□□ -1.36
HDAC3-205ENST00000469550 CSNK1G2-AS1Q8NCQ2 148 aa6.56□□□□□ -1.36
HDAC3-205ENST00000469550 TRAV23DV6A0A075B6W5 121 aa6.55□□□□□ -1.36
HDAC3-205ENST00000469550 LOC110117498A0A087WWA1 95 aa6.55□□□□□ -1.36
HDAC3-205ENST00000469550 Q5XG85 94 aa6.55□□□□□ -1.36
HDAC3-205ENST00000469550 ENHOQ6UWT2 76 aa6.55□□□□□ -1.36
HDAC3-205ENST00000469550 LYSTQ99698 3801 aa6.55□□□□□ -1.36
HDAC3-205ENST00000469550 STARD9Q9P2P6 4700 aa6.55□□□□□ -1.36
HDAC3-205ENST00000469550 IGHV4-28A0A0C4DH34 117 aa6.55□□□□□ -1.36
HDAC3-205ENST00000469550 EPM2AB3EWF7 344 aa6.55□□□□□ -1.36
HDAC3-205ENST00000469550 FAM19A1Q7Z5A9 133 aa6.55□□□□□ -1.36
HDAC3-205ENST00000469550 EPPK1P58107 5090 aaKnown RBP6.55□□□□□ -1.36
HDAC3-205ENST00000469550 TRAV7A0A075B6U4 112 aa6.54□□□□□ -1.36
HDAC3-205ENST00000469550 H3BQ85 93 aa6.54□□□□□ -1.36
HDAC3-205ENST00000469550 XCL1P47992 114 aa6.53□□□□□ -1.36
HDAC3-205ENST00000469550 LINC00575Q6W349 94 aa6.53□□□□□ -1.36
HDAC3-205ENST00000469550 Q6ZQT0 140 aa6.53□□□□□ -1.36
HDAC3-205ENST00000469550 ALMS1Q8TCU4 4167 aa6.53□□□□□ -1.36
HDAC3-205ENST00000469550 ZNF561-AS1K7EIQ3 104 aa6.53□□□□□ -1.36
HDAC3-205ENST00000469550 PDE6GP18545 87 aa6.53□□□□□ -1.36
HDAC3-205ENST00000469550 RBM3P98179 157 aaKnown RBP6.53□□□□□ -1.36
HDAC3-205ENST00000469550 KIAA0087Q14695 138 aa6.53□□□□□ -1.36
HDAC3-205ENST00000469550 C6orf223Q8N319 242 aa6.53□□□□□ -1.36
HDAC3-205ENST00000469550 FAM236DA0A1B0GTK5 79 aa6.52□□□□□ -1.37
HDAC3-205ENST00000469550 FAM236CP0DP71 79 aa6.52□□□□□ -1.37
HDAC3-205ENST00000469550 C20orf197Q8N268 126 aa6.52□□□□□ -1.37
HDAC3-205ENST00000469550 LINC00612Q8N6U2 182 aa6.52□□□□□ -1.37
HDAC3-205ENST00000469550 CSMD3Q7Z407 3707 aa6.52□□□□□ -1.37
HDAC3-205ENST00000469550 PRR3P79522 188 aaKnown RBP6.51□□□□□ -1.37
HDAC3-205ENST00000469550 KLKP1Q107X0 134 aa6.51□□□□□ -1.37
HDAC3-205ENST00000469550 C4orf26Q17RF5 130 aa6.51□□□□□ -1.37
HDAC3-205ENST00000469550 C11orf68Q9H3H3 251 aaKnown RBP6.51□□□□□ -1.37
HDAC3-205ENST00000469550 SERP1Q9Y6X1 66 aa6.51□□□□□ -1.37
HDAC3-205ENST00000469550 C6orf99Q4VX62 202 aa6.51□□□□□ -1.37
HDAC3-205ENST00000469550 CD164L2Q6UWJ8 174 aa6.51□□□□□ -1.37
HDAC3-205ENST00000469550 H7BZZ5 65 aa6.5□□□□□ -1.37
HDAC3-205ENST00000469550 CXCL6P80162 114 aa6.5□□□□□ -1.37
HDAC3-205ENST00000469550 PLECQ15149 4684 aaKnown RBP6.5□□□□□ -1.37
HDAC3-205ENST00000469550 RPL35AP18077 110 aaKnown RBP6.49□□□□□ -1.37
HDAC3-205ENST00000469550 LINC01547P58512 204 aaPredicted RBP6.49□□□□□ -1.37
HDAC3-205ENST00000469550 HYDINQ4G0P3 5121 aa6.49□□□□□ -1.37
HDAC3-205ENST00000469550 GYPEP15421 78 aa6.49□□□□□ -1.37
HDAC3-205ENST00000469550 HRCT1Q6UXD1 115 aa6.49□□□□□ -1.37
HDAC3-205ENST00000469550 Q6ZVQ6 151 aa6.48□□□□□ -1.37
HDAC3-205ENST00000469550 RETNQ9HD89 108 aa6.48□□□□□ -1.37
HDAC3-205ENST00000469550 WFDC10AQ9H1F0 79 aa6.47□□□□□ -1.37
HDAC3-205ENST00000469550 LAMTOR3Q9UHA4 124 aa6.47□□□□□ -1.37
HDAC3-205ENST00000469550 PRO0255Q9UI72 69 aa6.47□□□□□ -1.37
HDAC3-205ENST00000469550 NDUFC1O43677 76 aa6.46□□□□□ -1.37
HDAC3-205ENST00000469550 IGLV6-57P01721 117 aa6.46□□□□□ -1.37
HDAC3-205ENST00000469550 CHCHD10Q8WYQ3 142 aaPredicted RBP6.46□□□□□ -1.37
HDAC3-205ENST00000469550 Q8NDZ9 215 aa6.46□□□□□ -1.38
HDAC3-205ENST00000469550 A0A0J9YWU9 116 aa6.45□□□□□ -1.38
HDAC3-205ENST00000469550 DEFB130BP0DP73 79 aa6.45□□□□□ -1.38
HDAC3-205ENST00000469550 DEFB130AP0DP74 79 aa6.45□□□□□ -1.38
HDAC3-205ENST00000469550 HAMPP81172 84 aa6.45□□□□□ -1.38
HDAC3-205ENST00000469550 LINC00269Q8N2A0 174 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms