RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MGAM2Q2M2H8 2515 aa12.82□□□□□ -0.36
VIM-203ENST00000469543 CXCL5P42830 114 aa12.82□□□□□ -0.36
VIM-203ENST00000469543 TMEM126AQ9H061 195 aa12.81□□□□□ -0.36
VIM-203ENST00000469543 RPL18AQ02543 176 aaKnown RBP12.81□□□□□ -0.36
VIM-203ENST00000469543 A0A0J9YWU9 116 aa12.8□□□□□ -0.36
VIM-203ENST00000469543 ESRGQ1W209 222 aa12.8□□□□□ -0.36
VIM-203ENST00000469543 S100A7L2Q5SY68 101 aa12.8□□□□□ -0.36
VIM-203ENST00000469543 C6orf48Q9UBA6 75 aa12.8□□□□□ -0.36
VIM-203ENST00000469543 Q8N814 137 aa12.79□□□□□ -0.36
VIM-203ENST00000469543 NDUFC2O95298 119 aa12.78□□□□□ -0.36
VIM-203ENST00000469543 INAFM2P0DMQ5 153 aa12.78□□□□□ -0.36
VIM-203ENST00000469543 ACYP1P07311 99 aa12.78□□□□□ -0.36
VIM-203ENST00000469543 C3orf56Q8N813 242 aa12.78□□□□□ -0.36
VIM-203ENST00000469543 BAHCC1Q9P281 2608 aa12.77□□□□□ -0.36
VIM-203ENST00000469543 CCDC179H3BU77 68 aa12.77□□□□□ -0.36
VIM-203ENST00000469543 ORMDL1Q9P0S3 153 aa12.77□□□□□ -0.36
VIM-203ENST00000469543 Q6Q795 121 aa12.77□□□□□ -0.37
VIM-203ENST00000469543 LINC00846Q9NV44 126 aa12.75□□□□□ -0.37
VIM-203ENST00000469543 B5MCH6 92 aa12.74□□□□□ -0.37
VIM-203ENST00000469543 SDIM1Q6ZPB5 146 aa12.74□□□□□ -0.37
VIM-203ENST00000469543 OBSCN-AS1Q96MR7 158 aa12.74□□□□□ -0.37
VIM-203ENST00000469543 LYSTQ99698 3801 aa12.74□□□□□ -0.37
VIM-203ENST00000469543 TRBV7-7A0A0K0K1E9 115 aa12.74□□□□□ -0.37
VIM-203ENST00000469543 LINC00643Q86TS7 51 aa12.73□□□□□ -0.37
VIM-203ENST00000469543 FAM236AA0A1B0GUQ0 79 aa12.73□□□□□ -0.37
VIM-203ENST00000469543 FAM236BA0A1B0GV22 79 aa12.73□□□□□ -0.37
VIM-203ENST00000469543 KRTAP26-1Q6PEX3 210 aa12.72□□□□□ -0.37
VIM-203ENST00000469543 ZNF561-AS1K7EIQ3 104 aa12.71□□□□□ -0.37
VIM-203ENST00000469543 DEFB131BA0A096LNP1 70 aa12.71□□□□□ -0.38
VIM-203ENST00000469543 TRBV10-3A0A0K0K1G6 114 aa12.71□□□□□ -0.38
VIM-203ENST00000469543 EGFEM1PQ0D2K5 195 aa12.71□□□□□ -0.38
VIM-203ENST00000469543 CAMK2N2Q96S95 79 aa12.7□□□□□ -0.38
VIM-203ENST00000469543 IGKV3D-7A0A0C4DH55 119 aa12.7□□□□□ -0.38
VIM-203ENST00000469543 Q6ZRU5 148 aa12.7□□□□□ -0.38
VIM-203ENST00000469543 C11orf45Q8TAV5 145 aa12.69□□□□□ -0.38
VIM-203ENST00000469543 TENM2Q9NT68 2774 aa12.69□□□□□ -0.38
VIM-203ENST00000469543 COL7A1Q02388 2944 aa12.69□□□□□ -0.38
VIM-203ENST00000469543 STAB2Q8WWQ8 2551 aa12.69□□□□□ -0.38
VIM-203ENST00000469543 LINC00575Q6W349 94 aa12.68□□□□□ -0.38
VIM-203ENST00000469543 C15orf56Q8N910 161 aa12.68□□□□□ -0.38
VIM-203ENST00000469543 LINC00167Q96N53 147 aa12.68□□□□□ -0.38
VIM-203ENST00000469543 IGLV6-57P01721 117 aa12.67□□□□□ -0.38
VIM-203ENST00000469543 MRAPQ8TCY5 172 aa12.67□□□□□ -0.38
VIM-203ENST00000469543 IGKV2D-24A0A075B6R9 120 aa12.66□□□□□ -0.38
VIM-203ENST00000469543 SS18L2Q9UHA2 77 aa12.66□□□□□ -0.38
VIM-203ENST00000469543 DNAH3Q8TD57 4116 aa12.66□□□□□ -0.38
VIM-203ENST00000469543 CSMD3Q7Z407 3707 aa12.66□□□□□ -0.38
VIM-203ENST00000469543 TMEM256-PLSCR3K7ERE1 68 aa12.65□□□□□ -0.39
VIM-203ENST00000469543 hADV29S1A0JD25 119 aa12.64□□□□□ -0.39
VIM-203ENST00000469543 H3BNG1 76 aa12.64□□□□□ -0.39
VIM-203ENST00000469543 GVQW2A0A096LPI5 108 aaPredicted RBP12.64□□□□□ -0.39
VIM-203ENST00000469543 A0A087WVE0 104 aa12.63□□□□□ -0.39
VIM-203ENST00000469543 Q6ZQY7 126 aa12.63□□□□□ -0.39
VIM-203ENST00000469543 M0R2N4 97 aa12.62□□□□□ -0.39
VIM-203ENST00000469543 C1orf43Q9BWL3 253 aa12.62□□□□□ -0.39
VIM-203ENST00000469543 CCKP06307 115 aa12.61□□□□□ -0.39
VIM-203ENST00000469543 Q6ZRP5 223 aa12.61□□□□□ -0.39
VIM-203ENST00000469543 TRAV23DV6A0A075B6W5 121 aa12.6□□□□□ -0.39
VIM-203ENST00000469543 IMUPQ9GZP8 106 aa12.6□□□□□ -0.39
VIM-203ENST00000469543 HUWE1Q7Z6Z7 4374 aaKnown RBP12.6□□□□□ -0.39
VIM-203ENST00000469543 A0A1B0GX51 115 aa12.59□□□□□ -0.39
VIM-203ENST00000469543 VPREB1P12018 145 aa12.58□□□□□ -0.4
VIM-203ENST00000469543 CASC10Q5T4H9 136 aa12.58□□□□□ -0.4
VIM-203ENST00000469543 LAMTOR3Q9UHA4 124 aa12.58□□□□□ -0.4
VIM-203ENST00000469543 ZNF73O43830 326 aaPredicted RBP12.58□□□□□ -0.4
VIM-203ENST00000469543 SVIPQ8NHG7 77 aa12.58□□□□□ -0.4
VIM-203ENST00000469543 JMJD7-PLA2G4BH0Y9G9 81 aa12.57□□□□□ -0.4
VIM-203ENST00000469543 LINC01556Q5JQF7 62 aa12.56□□□□□ -0.4
VIM-203ENST00000469543 NDUFC2-KCTD14E9PQ53 114 aa12.55□□□□□ -0.4
VIM-203ENST00000469543 DIRC1Q969H9 104 aa12.55□□□□□ -0.4
VIM-203ENST00000469543 DNAH10Q8IVF4 4471 aa12.54□□□□□ -0.4
VIM-203ENST00000469543 MUC7Q8TAX7 377 aa12.54□□□□□ -0.4
VIM-203ENST00000469543 RBM3P98179 157 aaKnown RBP12.53□□□□□ -0.4
VIM-203ENST00000469543 LINC00588Q9Y4M8 146 aa12.53□□□□□ -0.4
VIM-203ENST00000469543 HIST1H4AP62805 103 aaKnown RBP12.52□□□□□ -0.41
VIM-203ENST00000469543 SYCNQ0VAF6 134 aa12.5□□□□□ -0.41
VIM-203ENST00000469543 SERTAD4-AS1Q5TG53 156 aa12.5□□□□□ -0.41
VIM-203ENST00000469543 COX7BP24311 80 aa12.49□□□□□ -0.41
VIM-203ENST00000469543 Q6JHZ5 121 aa12.49□□□□□ -0.41
VIM-203ENST00000469543 Q6ZQT0 140 aa12.49□□□□□ -0.41
VIM-203ENST00000469543 C2orf48Q96LS8 159 aa12.48□□□□□ -0.41
VIM-203ENST00000469543 FAM168BA1KXE4 195 aa12.48□□□□□ -0.41
VIM-203ENST00000469543 K7EIL1 84 aa12.48□□□□□ -0.41
VIM-203ENST00000469543 ELOF1P60002 83 aaKnown RBP12.48□□□□□ -0.41
VIM-203ENST00000469543 FAM19A1Q7Z5A9 133 aa12.48□□□□□ -0.41
VIM-203ENST00000469543 DNAH1Q9P2D7 4330 aa12.48□□□□□ -0.41
VIM-203ENST00000469543 DNAH10OSP0CZ25 163 aa12.47□□□□□ -0.41
VIM-203ENST00000469543 M0R378 163 aa12.47□□□□□ -0.41
VIM-203ENST00000469543 RPL37AP8A6NKH3 93 aa12.45□□□□□ -0.42
VIM-203ENST00000469543 DSCR8Q96T75 97 aa12.44□□□□□ -0.42
VIM-203ENST00000469543 USP17L23D6RBM5 183 aa12.43□□□□□ -0.42
VIM-203ENST00000469543 DNAH7Q8WXX0 4024 aa12.43□□□□□ -0.42
VIM-203ENST00000469543 TRAV10A0A0B4J240 114 aa12.43□□□□□ -0.42
VIM-203ENST00000469543 DNAH9Q9NYC9 4486 aa12.43□□□□□ -0.42
VIM-203ENST00000469543 SRRM2Q9UQ35 2752 aaKnown RBP12.42□□□□□ -0.42
VIM-203ENST00000469543 LINC00528Q8N1L1 170 aa12.42□□□□□ -0.42
VIM-203ENST00000469543 TM2D3Q9BRN9 247 aa12.41□□□□□ -0.42
VIM-203ENST00000469543 C7orf33Q8WU49 177 aa12.41□□□□□ -0.42
VIM-203ENST00000469543 CYSTM1Q9H1C7 97 aa12.41□□□□□ -0.42
VIM-203ENST00000469543 C3orf22Q8N5N4 141 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms