RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 TRBV24-1A0A075B6N3 115 aa2.79□□□□□ -1.96
PTPN4-209ENST00000469511 A0A1B0GVG6 124 aa2.79□□□□□ -1.96
PTPN4-209ENST00000469511 COX6B2Q6YFQ2 88 aa2.79□□□□□ -1.96
PTPN4-209ENST00000469511 NKAPP1Q8N9T2 125 aa2.79□□□□□ -1.96
PTPN4-209ENST00000469511 TMEM141Q96I45 108 aa2.79□□□□□ -1.96
PTPN4-209ENST00000469511 C20orf78Q9BR46 151 aa2.79□□□□□ -1.96
PTPN4-209ENST00000469511 EIF5A2Q9GZV4 153 aaKnown RBP2.79□□□□□ -1.96
PTPN4-209ENST00000469511 NDUFAF8A1L188 74 aa2.78□□□□□ -1.96
PTPN4-209ENST00000469511 D6R8Y8 96 aa2.78□□□□□ -1.96
PTPN4-209ENST00000469511 PPP1R2P9O14990 202 aa2.78□□□□□ -1.96
PTPN4-209ENST00000469511 IFI27P40305 119 aaPredicted RBP2.78□□□□□ -1.96
PTPN4-209ENST00000469511 MOBPQ13875 183 aa2.78□□□□□ -1.96
PTPN4-209ENST00000469511 C2orf66Q6UXQ4 117 aa2.78□□□□□ -1.96
PTPN4-209ENST00000469511 SMCR5Q8TEV8 140 aa2.78□□□□□ -1.96
PTPN4-209ENST00000469511 BORCS7Q96B45 105 aa2.78□□□□□ -1.96
PTPN4-209ENST00000469511 AMELXQ99217 191 aa2.78□□□□□ -1.96
PTPN4-209ENST00000469511 V9GYV3 84 aa2.78□□□□□ -1.96
PTPN4-209ENST00000469511 CKS2P33552 79 aa2.77□□□□□ -1.97
PTPN4-209ENST00000469511 RIGQ13278 110 aa2.77□□□□□ -1.97
PTPN4-209ENST00000469511 TEX43Q6ZNM6 134 aa2.77□□□□□ -1.97
PTPN4-209ENST00000469511 FAM19A3Q7Z5A8 133 aa2.77□□□□□ -1.97
PTPN4-209ENST00000469511 LINC00862A6NCI5 91 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 SLC25A20O43772 301 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 ERC2-IT1O76042 136 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 PPP1R17O96001 155 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 MT2AP02795 61 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 PFN2P35080 140 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 CEBPGP53567 150 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 RAB14P61106 215 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 ZNF345Q14585 488 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 KRTAP6-3Q3LI67 103 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 NDUFA13Q9P0J0 144 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 NDUFA12Q9UI09 145 aa2.76□□□□□ -1.97
PTPN4-209ENST00000469511 LOC389332A0A1B0GUA5 103 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 KANTRA0A1W2PQU2 76 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 IGIPA6NJ69 53 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 MT1FP04733 61 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 SPINK8P0C7L1 97 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 LINC00483Q53H64 154 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 LINC01551Q86U37 167 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 COX7B2Q8TF08 81 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 GNB1LQ9BYB4 327 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 VCX2Q9H322 139 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 SND1-IT1Q9HBX3 110 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 OSTCQ9NRP0 149 aa2.75□□□□□ -1.97
PTPN4-209ENST00000469511 RPS29P62273 56 aaKnown RBP2.74□□□□□ -1.97
PTPN4-209ENST00000469511 HERV-K104P63124 156 aa2.74□□□□□ -1.97
PTPN4-209ENST00000469511 MRPL54Q6P161 138 aaKnown RBP2.74□□□□□ -1.97
PTPN4-209ENST00000469511 Q6Q795 121 aa2.74□□□□□ -1.97
PTPN4-209ENST00000469511 CHTOPQ9Y3Y2 248 aaKnown RBP2.74□□□□□ -1.97
PTPN4-209ENST00000469511 HMSDA8MTL9 139 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 KRTAP16-1A8MUX0 517 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 ATP6V1G1O75348 118 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 IGLV6-57P01721 117 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 RAB5AP20339 215 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 CXCL5P42830 114 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 HERVK_113P63121 156 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 FAM74A3Q4VXF1 159 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 HRCT1Q6UXD1 115 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 SSBP3-AS1Q7Z2R9 100 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 FAM19A2Q8N3H0 131 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 ZNF625Q96I27 306 aaPredicted RBP2.73□□□□□ -1.97
PTPN4-209ENST00000469511 TIMM17AQ99595 171 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 C2orf88Q9BSF0 95 aa2.73□□□□□ -1.97
PTPN4-209ENST00000469511 A0A1B0GXF2 115 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 SMIM27A0A1W2PRY6 76 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 TMEM250H0YL14 139 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 TEX46H3BTG2 121 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 ADCYAP1P18509 176 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 SPRR1AP35321 89 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 RPL37P61927 97 aaKnown RBP2.72□□□□□ -1.97
PTPN4-209ENST00000469511 PDZD11Q5EBL8 140 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 TMEM136Q6ZRR5 245 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 PRELID3AQ96N28 172 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 SMIM7Q9BQ49 75 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 OCR1Q9BZK8 76 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 GEMIN7Q9H840 131 aaKnown RBP2.72□□□□□ -1.97
PTPN4-209ENST00000469511 NAT8BQ9UHF3 227 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 CYSLTR1Q9Y271 337 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 ZNF706Q9Y5V0 76 aaPredicted RBP2.72□□□□□ -1.97
PTPN4-209ENST00000469511 NEBP20929 6669 aa2.72□□□□□ -1.97
PTPN4-209ENST00000469511 SRP19P09132 144 aaKnown RBP2.71□□□□□ -1.98
PTPN4-209ENST00000469511 NDUFV3P56181 108 aaKnown RBP2.71□□□□□ -1.98
PTPN4-209ENST00000469511 RPL23P62829 140 aaKnown RBP2.71□□□□□ -1.98
PTPN4-209ENST00000469511 KRTAP19-6Q3LI70 58 aa2.71□□□□□ -1.98
PTPN4-209ENST00000469511 AKAP14Q86UN6 197 aa2.71□□□□□ -1.98
PTPN4-209ENST00000469511 MUC12Q9UKN1 5478 aa2.7□□□□□ -1.98
PTPN4-209ENST00000469511 A0A0U1RRA0 63 aa2.7□□□□□ -1.98
PTPN4-209ENST00000469511 C9JQL5 133 aa2.7□□□□□ -1.98
PTPN4-209ENST00000469511 ORMDL3Q8N138 153 aa2.7□□□□□ -1.98
PTPN4-209ENST00000469511 Q8N8P6 123 aa2.7□□□□□ -1.98
PTPN4-209ENST00000469511 Q9BRP9 147 aa2.7□□□□□ -1.98
PTPN4-209ENST00000469511 ERG28Q9UKR5 140 aa2.7□□□□□ -1.98
PTPN4-209ENST00000469511 TINCRA0A1B0GVN0 87 aa2.69□□□□□ -1.98
PTPN4-209ENST00000469511 NCR3O14931 201 aa2.69□□□□□ -1.98
PTPN4-209ENST00000469511 ATP5LO75964 103 aa2.69□□□□□ -1.98
PTPN4-209ENST00000469511 TAGLN2P37802 199 aaKnown RBP2.69□□□□□ -1.98
PTPN4-209ENST00000469511 C9orf153Q5TBE3 101 aa2.69□□□□□ -1.98
PTPN4-209ENST00000469511 LINC00518Q8N0U6 118 aa2.69□□□□□ -1.98
PTPN4-209ENST00000469511 ST20-AS1Q8NBB2 130 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms