RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 FAM168BA1KXE4 195 aa7.4□□□□□ -1.22
SQSTM1-206ENST00000466342 PFN2P35080 140 aa7.4□□□□□ -1.22
SQSTM1-206ENST00000466342 TSPEAR-AS2P59090 65 aa7.4□□□□□ -1.22
SQSTM1-206ENST00000466342 SNRPEP62304 92 aaKnown RBP7.4□□□□□ -1.22
SQSTM1-206ENST00000466342 C5orf52A6NGY3 159 aa7.39□□□□□ -1.23
SQSTM1-206ENST00000466342 E9PLD3 99 aa7.39□□□□□ -1.23
SQSTM1-206ENST00000466342 J3QQQ9 107 aa7.39□□□□□ -1.23
SQSTM1-206ENST00000466342 HERV-K104P63124 156 aa7.39□□□□□ -1.23
SQSTM1-206ENST00000466342 XAGE1AQ9HD64 81 aa7.39□□□□□ -1.23
SQSTM1-206ENST00000466342 NDUFA12Q9UI09 145 aa7.39□□□□□ -1.23
SQSTM1-206ENST00000466342 A0A0U1RQV1 116 aa7.38□□□□□ -1.23
SQSTM1-206ENST00000466342 MYMXA0A1B0GTQ4 84 aa7.38□□□□□ -1.23
SQSTM1-206ENST00000466342 LGALS3P17931 250 aaKnown RBP7.38□□□□□ -1.23
SQSTM1-206ENST00000466342 FAM19A5Q7Z5A7 132 aaPredicted RBP7.38□□□□□ -1.23
SQSTM1-206ENST00000466342 KRTAP7-1Q8IUC3 87 aa7.38□□□□□ -1.23
SQSTM1-206ENST00000466342 NMUP48645 174 aa7.37□□□□□ -1.23
SQSTM1-206ENST00000466342 AKR1D1P51857 326 aa7.37□□□□□ -1.23
SQSTM1-206ENST00000466342 KRTAP10-8P60410 259 aa7.37□□□□□ -1.23
SQSTM1-206ENST00000466342 TMA7Q9Y2S6 64 aaKnown RBP7.37□□□□□ -1.23
SQSTM1-206ENST00000466342 LINC00587B1AMM8 73 aa7.36□□□□□ -1.23
SQSTM1-206ENST00000466342 M0QXV9 152 aa7.36□□□□□ -1.23
SQSTM1-206ENST00000466342 LINC00158P58513 81 aa7.36□□□□□ -1.23
SQSTM1-206ENST00000466342 MEIG1Q5JSS6 88 aa7.36□□□□□ -1.23
SQSTM1-206ENST00000466342 PHF5AQ7RTV0 110 aaKnown RBP7.36□□□□□ -1.23
SQSTM1-206ENST00000466342 PRR3P79522 188 aaKnown RBP7.35□□□□□ -1.23
SQSTM1-206ENST00000466342 ATOH7Q8N100 152 aa7.35□□□□□ -1.23
SQSTM1-206ENST00000466342 SND1-IT1Q9HBX3 110 aa7.35□□□□□ -1.23
SQSTM1-206ENST00000466342 A0A0U1RRA0 63 aa7.34□□□□□ -1.23
SQSTM1-206ENST00000466342 SMIM13P0DJ93 91 aa7.34□□□□□ -1.23
SQSTM1-206ENST00000466342 LCE2AQ5TA79 106 aaPredicted RBP7.34□□□□□ -1.23
SQSTM1-206ENST00000466342 IGKV2D-26A0A0A0MRZ7 120 aa7.33□□□□□ -1.24
SQSTM1-206ENST00000466342 TP73-AS1Q9UF72 201 aa7.33□□□□□ -1.24
SQSTM1-206ENST00000466342 C22orf24Q9Y442 160 aa7.33□□□□□ -1.24
SQSTM1-206ENST00000466342 IGLV5-37A0A075B6J1 123 aa7.32□□□□□ -1.24
SQSTM1-206ENST00000466342 SPINK6Q6UWN8 80 aa7.32□□□□□ -1.24
SQSTM1-206ENST00000466342 MIR7-3HGQ8N6C7 128 aa7.32□□□□□ -1.24
SQSTM1-206ENST00000466342 A0A0J9YXY3 114 aa7.31□□□□□ -1.24
SQSTM1-206ENST00000466342 ANKRD39Q53RE8 183 aa7.31□□□□□ -1.24
SQSTM1-206ENST00000466342 MRPL55Q7Z7F7 128 aaKnown RBP7.31□□□□□ -1.24
SQSTM1-206ENST00000466342 ZNF815PA8K554 130 aa7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 VPREB1P12018 145 aa7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 UBE2BP63146 152 aa7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 RPL24P83731 157 aaKnown RBP7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 SRSF9Q13242 221 aaKnown RBP eCLIP7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 LBHQ53QV2 105 aaPredicted RBP7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 KRTAP11-1Q8IUC1 163 aa7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 NKAPP1Q8N9T2 125 aa7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 TTTY13Q9BZ97 58 aa7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 PSORS1C2Q9UIG4 136 aa7.3□□□□□ -1.24
SQSTM1-206ENST00000466342 SCGB1D1O95968 90 aa7.28□□□□□ -1.24
SQSTM1-206ENST00000466342 REG3GQ6UW15 175 aa7.28□□□□□ -1.24
SQSTM1-206ENST00000466342 DAND5Q8N907 189 aa7.28□□□□□ -1.24
SQSTM1-206ENST00000466342 Q8NDZ9 215 aa7.28□□□□□ -1.24
SQSTM1-206ENST00000466342 LOC107984156A0A0G2JMH3 177 aa7.27□□□□□ -1.25
SQSTM1-206ENST00000466342 HSBP1L1C9JCN9 74 aa7.27□□□□□ -1.25
SQSTM1-206ENST00000466342 TIMM17BO60830 172 aa7.27□□□□□ -1.25
SQSTM1-206ENST00000466342 C1orf137Q5JT78 98 aa7.27□□□□□ -1.25
SQSTM1-206ENST00000466342 ARL17AQ8IVW1 177 aa7.27□□□□□ -1.25
SQSTM1-206ENST00000466342 LINC00167Q96N53 147 aa7.27□□□□□ -1.25
SQSTM1-206ENST00000466342 GAGE10A6NGK3 116 aa7.26□□□□□ -1.25
SQSTM1-206ENST00000466342 ADAMTSL4-AS1Q5T5F5 129 aa7.26□□□□□ -1.25
SQSTM1-206ENST00000466342 BOD1L2Q8IYS8 172 aa7.26□□□□□ -1.25
SQSTM1-206ENST00000466342 LITAFQ99732 161 aa7.26□□□□□ -1.25
SQSTM1-206ENST00000466342 MIEN1Q9BRT3 115 aa7.26□□□□□ -1.25
SQSTM1-206ENST00000466342 RPL37AP8A6NKH3 93 aa7.25□□□□□ -1.25
SQSTM1-206ENST00000466342 PCP2Q8IVA1 136 aa7.25□□□□□ -1.25
SQSTM1-206ENST00000466342 LOC105371267A0A1B0GV96 52 aa7.24□□□□□ -1.25
SQSTM1-206ENST00000466342 IGLV7-43P04211 117 aa7.24□□□□□ -1.25
SQSTM1-206ENST00000466342 SCGB1D4Q6XE38 83 aa7.24□□□□□ -1.25
SQSTM1-206ENST00000466342 IGLV1-50A0A075B6I6 118 aa7.23□□□□□ -1.25
SQSTM1-206ENST00000466342 M0R378 163 aa7.23□□□□□ -1.25
SQSTM1-206ENST00000466342 JOSD1Q15040 202 aaPredicted RBP7.23□□□□□ -1.25
SQSTM1-206ENST00000466342 SOSTDC1Q6X4U4 206 aa7.23□□□□□ -1.25
SQSTM1-206ENST00000466342 IGKV2-28A0A075B6P5 120 aa7.22□□□□□ -1.25
SQSTM1-206ENST00000466342 TMEM238C9JI98 176 aa7.22□□□□□ -1.25
SQSTM1-206ENST00000466342 NCR3O14931 201 aa7.22□□□□□ -1.25
SQSTM1-206ENST00000466342 NDUFC2O95298 119 aa7.22□□□□□ -1.25
SQSTM1-206ENST00000466342 IGKV2D-28P01615 120 aa7.22□□□□□ -1.25
SQSTM1-206ENST00000466342 NPC2P61916 151 aa7.22□□□□□ -1.25
SQSTM1-206ENST00000466342 EIF4EBP3O60516 100 aaPredicted RBP7.21□□□□□ -1.26
SQSTM1-206ENST00000466342 LINC00308Q8TCZ7 52 aa7.21□□□□□ -1.26
SQSTM1-206ENST00000466342 SPANXDQ9BXN6 97 aa7.21□□□□□ -1.26
SQSTM1-206ENST00000466342 SPANXCQ9NY87 97 aa7.21□□□□□ -1.26
SQSTM1-206ENST00000466342 TRBV10-2A0A0K0K1G8 114 aa7.2□□□□□ -1.26
SQSTM1-206ENST00000466342 BCE1O60756 84 aa7.2□□□□□ -1.26
SQSTM1-206ENST00000466342 SPANXB1Q9NS25 103 aaPredicted RBP7.2□□□□□ -1.26
SQSTM1-206ENST00000466342 COX8AP10176 69 aa7.18□□□□□ -1.26
SQSTM1-206ENST00000466342 Q6ZVH6 145 aa7.18□□□□□ -1.26
SQSTM1-206ENST00000466342 DIRC1Q969H9 104 aa7.18□□□□□ -1.26
SQSTM1-206ENST00000466342 VAMP8Q9BV40 100 aa7.18□□□□□ -1.26
SQSTM1-206ENST00000466342 TMEM126AQ9H061 195 aa7.18□□□□□ -1.26
SQSTM1-206ENST00000466342 CRCT1Q9UGL9 99 aa7.18□□□□□ -1.26
SQSTM1-206ENST00000466342 PAM16Q9Y3D7 125 aa7.18□□□□□ -1.26
SQSTM1-206ENST00000466342 TRBV10-3A0A0K0K1G6 114 aa7.17□□□□□ -1.26
SQSTM1-206ENST00000466342 PRYO14603 147 aa7.17□□□□□ -1.26
SQSTM1-206ENST00000466342 ZNF861PO60384 105 aa7.17□□□□□ -1.26
SQSTM1-206ENST00000466342 IFITM1P13164 125 aa7.17□□□□□ -1.26
SQSTM1-206ENST00000466342 SPATA45Q537H7 98 aa7.17□□□□□ -1.26
SQSTM1-206ENST00000466342 PYY3Q5JQD4 70 aa7.17□□□□□ -1.26
SQSTM1-206ENST00000466342 COPS9Q8WXC6 57 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms