RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 MEIG1Q5JSS6 88 aa7.18□□□□□ -1.26
CUX1-207ENST00000465461 Q8NDZ9 215 aa7.18□□□□□ -1.26
CUX1-207ENST00000465461 PLEKHB2Q96CS7 222 aa7.18□□□□□ -1.26
CUX1-207ENST00000465461 COX17Q14061 63 aa7.17□□□□□ -1.26
CUX1-207ENST00000465461 SFTA2Q6UW10 78 aa7.17□□□□□ -1.26
CUX1-207ENST00000465461 HIST3H2BBQ8N257 126 aa7.17□□□□□ -1.26
CUX1-207ENST00000465461 MYMXA0A1B0GTQ4 84 aa7.16□□□□□ -1.26
CUX1-207ENST00000465461 RPL37AP8A6NKH3 93 aa7.16□□□□□ -1.26
CUX1-207ENST00000465461 LGALS3P17931 250 aaKnown RBP7.16□□□□□ -1.26
CUX1-207ENST00000465461 MRPL55Q7Z7F7 128 aaKnown RBP7.16□□□□□ -1.26
CUX1-207ENST00000465461 ATOH7Q8N100 152 aa7.16□□□□□ -1.26
CUX1-207ENST00000465461 LINC00167Q96N53 147 aa7.16□□□□□ -1.26
CUX1-207ENST00000465461 PLA2G2DQ9UNK4 145 aa7.16□□□□□ -1.26
CUX1-207ENST00000465461 E9PLD3 99 aa7.15□□□□□ -1.26
CUX1-207ENST00000465461 S100A6P06703 90 aa7.15□□□□□ -1.26
CUX1-207ENST00000465461 SNRPEP62304 92 aaKnown RBP7.15□□□□□ -1.26
CUX1-207ENST00000465461 HERV-K104P63124 156 aa7.15□□□□□ -1.26
CUX1-207ENST00000465461 SRSF9Q13242 221 aaKnown RBP eCLIP7.15□□□□□ -1.26
CUX1-207ENST00000465461 MIR7-3HGQ8N6C7 128 aa7.15□□□□□ -1.26
CUX1-207ENST00000465461 DAND5Q8N907 189 aa7.15□□□□□ -1.26
CUX1-207ENST00000465461 HIST1H2BLQ99880 126 aa7.15□□□□□ -1.26
CUX1-207ENST00000465461 IGKV2D-26A0A0A0MRZ7 120 aa7.14□□□□□ -1.27
CUX1-207ENST00000465461 LOC100996750A0A140TA64 210 aa7.14□□□□□ -1.27
CUX1-207ENST00000465461 KRTAP29-1A8MX34 341 aaPredicted RBP7.14□□□□□ -1.27
CUX1-207ENST00000465461 VPREB1P12018 145 aa7.14□□□□□ -1.27
CUX1-207ENST00000465461 S100A2P29034 98 aa7.14□□□□□ -1.27
CUX1-207ENST00000465461 LBHQ53QV2 105 aaPredicted RBP7.14□□□□□ -1.27
CUX1-207ENST00000465461 NKAPP1Q8N9T2 125 aa7.14□□□□□ -1.27
CUX1-207ENST00000465461 KRTAP4-6Q9BYQ5 205 aa7.14□□□□□ -1.27
CUX1-207ENST00000465461 TTTY13Q9BZ97 58 aa7.14□□□□□ -1.27
CUX1-207ENST00000465461 IGLV5-37A0A075B6J1 123 aa7.13□□□□□ -1.27
CUX1-207ENST00000465461 IGLV7-43P04211 117 aa7.13□□□□□ -1.27
CUX1-207ENST00000465461 SPINK6Q6UWN8 80 aa7.13□□□□□ -1.27
CUX1-207ENST00000465461 TP73-AS1Q9UF72 201 aa7.13□□□□□ -1.27
CUX1-207ENST00000465461 IGKV2-28A0A075B6P5 120 aa7.12□□□□□ -1.27
CUX1-207ENST00000465461 IGKV2D-28P01615 120 aa7.12□□□□□ -1.27
CUX1-207ENST00000465461 MYCBP2O75592 4640 aa7.12□□□□□ -1.27
CUX1-207ENST00000465461 A0A0J9YXY3 114 aa7.11□□□□□ -1.27
CUX1-207ENST00000465461 C20orf202A1L168 122 aa7.11□□□□□ -1.27
CUX1-207ENST00000465461 NMUP48645 174 aa7.11□□□□□ -1.27
CUX1-207ENST00000465461 RPL24P83731 157 aaKnown RBP7.11□□□□□ -1.27
CUX1-207ENST00000465461 ANKRD39Q53RE8 183 aa7.11□□□□□ -1.27
CUX1-207ENST00000465461 PKHD1L1Q86WI1 4243 aa7.11□□□□□ -1.27
CUX1-207ENST00000465461 LRP1Q07954 4544 aaKnown RBP7.1□□□□□ -1.27
CUX1-207ENST00000465461 OXTP01178 125 aa7.1□□□□□ -1.27
CUX1-207ENST00000465461 NPC2P61916 151 aa7.1□□□□□ -1.27
CUX1-207ENST00000465461 ADAMTSL4-AS1Q5T5F5 129 aa7.1□□□□□ -1.27
CUX1-207ENST00000465461 BOD1L2Q8IYS8 172 aa7.1□□□□□ -1.27
CUX1-207ENST00000465461 C5orf52A6NGY3 159 aa7.09□□□□□ -1.27
CUX1-207ENST00000465461 LINC00587B1AMM8 73 aa7.09□□□□□ -1.27
CUX1-207ENST00000465461 NCR3O14931 201 aa7.09□□□□□ -1.27
CUX1-207ENST00000465461 IGLV1-50A0A075B6I6 118 aa7.08□□□□□ -1.28
CUX1-207ENST00000465461 ZNF815PA8K554 130 aa7.08□□□□□ -1.28
CUX1-207ENST00000465461 TMEM238C9JI98 176 aa7.08□□□□□ -1.28
CUX1-207ENST00000465461 EIF4EBP3O60516 100 aaPredicted RBP7.08□□□□□ -1.28
CUX1-207ENST00000465461 MT1HL1P0DM35 61 aa7.07□□□□□ -1.28
CUX1-207ENST00000465461 SOSTDC1Q6X4U4 206 aa7.07□□□□□ -1.28
CUX1-207ENST00000465461 TMA7Q9Y2S6 64 aaKnown RBP7.07□□□□□ -1.28
CUX1-207ENST00000465461 M0R378 163 aa7.06□□□□□ -1.28
CUX1-207ENST00000465461 BCE1O60756 84 aa7.06□□□□□ -1.28
CUX1-207ENST00000465461 LITAFQ99732 161 aa7.06□□□□□ -1.28
CUX1-207ENST00000465461 FAT3Q8TDW7 4589 aa7.06□□□□□ -1.28
CUX1-207ENST00000465461 H0Y9J4 135 aa7.05□□□□□ -1.28
CUX1-207ENST00000465461 ZNF861PO60384 105 aa7.05□□□□□ -1.28
CUX1-207ENST00000465461 REG3GQ6UW15 175 aa7.05□□□□□ -1.28
CUX1-207ENST00000465461 PCP2Q8IVA1 136 aa7.05□□□□□ -1.28
CUX1-207ENST00000465461 DIRC1Q969H9 104 aa7.05□□□□□ -1.28
CUX1-207ENST00000465461 LINC01600Q96MT4 127 aa7.05□□□□□ -1.28
CUX1-207ENST00000465461 LOC107984156A0A0G2JMH3 177 aa7.04□□□□□ -1.28
CUX1-207ENST00000465461 SCGB1D1O95968 90 aa7.04□□□□□ -1.28
CUX1-207ENST00000465461 ARL17AQ8IVW1 177 aa7.04□□□□□ -1.28
CUX1-207ENST00000465461 MIEN1Q9BRT3 115 aa7.04□□□□□ -1.28
CUX1-207ENST00000465461 TMEM126AQ9H061 195 aa7.04□□□□□ -1.28
CUX1-207ENST00000465461 UBE2AP49459 152 aa7.03□□□□□ -1.28
CUX1-207ENST00000465461 PRLHP81277 87 aa7.03□□□□□ -1.28
CUX1-207ENST00000465461 FAM19A1Q7Z5A9 133 aa7.03□□□□□ -1.28
CUX1-207ENST00000465461 TRBV10-3A0A0K0K1G6 114 aa7.02□□□□□ -1.29
CUX1-207ENST00000465461 SCGB1D4Q6XE38 83 aa7.02□□□□□ -1.29
CUX1-207ENST00000465461 LINC00308Q8TCZ7 52 aa7.02□□□□□ -1.29
CUX1-207ENST00000465461 DMBT1Q9UGM3 2413 aaPredicted RBP7.01□□□□□ -1.29
CUX1-207ENST00000465461 TIMM17BO60830 172 aa7.01□□□□□ -1.29
CUX1-207ENST00000465461 KRTAP1-4P0C5Y4 121 aa7.01□□□□□ -1.29
CUX1-207ENST00000465461 RPL28P46779 137 aaKnown RBP7.01□□□□□ -1.29
CUX1-207ENST00000465461 KRTAP13-1Q8IUC0 172 aa7.01□□□□□ -1.29
CUX1-207ENST00000465461 AKR1D1P51857 326 aa7□□□□□ -1.29
CUX1-207ENST00000465461 KRTAP10-8P60410 259 aa7□□□□□ -1.29
CUX1-207ENST00000465461 PRR26Q8N8Z3 221 aa7□□□□□ -1.29
CUX1-207ENST00000465461 HSBP1L1C9JCN9 74 aa6.99□□□□□ -1.29
CUX1-207ENST00000465461 NDUFC2O95298 119 aa6.99□□□□□ -1.29
CUX1-207ENST00000465461 DDTP30046 118 aa6.99□□□□□ -1.29
CUX1-207ENST00000465461 SPANXB1Q9NS25 103 aaPredicted RBP6.99□□□□□ -1.29
CUX1-207ENST00000465461 ANAPC11Q9NYG5 84 aa6.99□□□□□ -1.29
CUX1-207ENST00000465461 PRYO14603 147 aa6.98□□□□□ -1.29
CUX1-207ENST00000465461 KCNQ1DNQ9H478 68 aa6.98□□□□□ -1.29
CUX1-207ENST00000465461 TRBV10-2A0A0K0K1G8 114 aa6.97□□□□□ -1.29
CUX1-207ENST00000465461 S100A7L2Q5SY68 101 aa6.97□□□□□ -1.29
CUX1-207ENST00000465461 SPANXDQ9BXN6 97 aa6.97□□□□□ -1.29
CUX1-207ENST00000465461 SPANXCQ9NY87 97 aa6.97□□□□□ -1.29
CUX1-207ENST00000465461 HERC1Q15751 4861 aa6.97□□□□□ -1.29
CUX1-207ENST00000465461 SPRR1AP35321 89 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 189.7 ms