RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 HIST1H2BLQ99880 126 aa11.04□□□□□ -0.64
COL7A1-205ENST00000465238 LINC00158P58513 81 aa11.03□□□□□ -0.64
COL7A1-205ENST00000465238 E9PLD3 99 aa11.02□□□□□ -0.65
COL7A1-205ENST00000465238 TSPEAR-AS2P59090 65 aa11.02□□□□□ -0.65
COL7A1-205ENST00000465238 MEIG1Q5JSS6 88 aa11.02□□□□□ -0.65
COL7A1-205ENST00000465238 PHF5AQ7RTV0 110 aaKnown RBP11.02□□□□□ -0.65
COL7A1-205ENST00000465238 LINC00587B1AMM8 73 aa11.01□□□□□ -0.65
COL7A1-205ENST00000465238 AKR1D1P51857 326 aa11.01□□□□□ -0.65
COL7A1-205ENST00000465238 A0A0U1RRA0 63 aa11□□□□□ -0.65
COL7A1-205ENST00000465238 M0QXV9 152 aa11□□□□□ -0.65
COL7A1-205ENST00000465238 NMUP48645 174 aa11□□□□□ -0.65
COL7A1-205ENST00000465238 C5orf52A6NGY3 159 aa10.99□□□□□ -0.65
COL7A1-205ENST00000465238 KRTAP7-1Q8IUC3 87 aa10.99□□□□□ -0.65
COL7A1-205ENST00000465238 SND1-IT1Q9HBX3 110 aa10.99□□□□□ -0.65
COL7A1-205ENST00000465238 SMIM13P0DJ93 91 aa10.98□□□□□ -0.65
COL7A1-205ENST00000465238 UBE2BP63146 152 aa10.97□□□□□ -0.65
COL7A1-205ENST00000465238 PRR3P79522 188 aaKnown RBP10.97□□□□□ -0.65
COL7A1-205ENST00000465238 C22orf24Q9Y442 160 aa10.97□□□□□ -0.65
COL7A1-205ENST00000465238 LBHQ53QV2 105 aaPredicted RBP10.96□□□□□ -0.65
COL7A1-205ENST00000465238 ATOH7Q8N100 152 aa10.96□□□□□ -0.65
COL7A1-205ENST00000465238 TNXBP22105 4242 aa10.95□□□□□ -0.66
COL7A1-205ENST00000465238 RPL24P83731 157 aaKnown RBP10.94□□□□□ -0.66
COL7A1-205ENST00000465238 MIR7-3HGQ8N6C7 128 aa10.94□□□□□ -0.66
COL7A1-205ENST00000465238 NKAPP1Q8N9T2 125 aa10.94□□□□□ -0.66
COL7A1-205ENST00000465238 TP73-AS1Q9UF72 201 aa10.94□□□□□ -0.66
COL7A1-205ENST00000465238 MRPL55Q7Z7F7 128 aaKnown RBP10.93□□□□□ -0.66
COL7A1-205ENST00000465238 LINC01600Q96MT4 127 aa10.93□□□□□ -0.66
COL7A1-205ENST00000465238 PSORS1C2Q9UIG4 136 aa10.93□□□□□ -0.66
COL7A1-205ENST00000465238 IGLV5-37A0A075B6J1 123 aa10.92□□□□□ -0.66
COL7A1-205ENST00000465238 IGKV2D-26A0A0A0MRZ7 120 aa10.92□□□□□ -0.66
COL7A1-205ENST00000465238 A0A0J9YXY3 114 aa10.91□□□□□ -0.66
COL7A1-205ENST00000465238 ZNF815PA8K554 130 aa10.9□□□□□ -0.66
COL7A1-205ENST00000465238 SCGB1D1O95968 90 aa10.9□□□□□ -0.66
COL7A1-205ENST00000465238 ANKRD39Q53RE8 183 aa10.9□□□□□ -0.66
COL7A1-205ENST00000465238 C1orf137Q5JT78 98 aa10.9□□□□□ -0.66
COL7A1-205ENST00000465238 SPINK6Q6UWN8 80 aa10.9□□□□□ -0.66
COL7A1-205ENST00000465238 KRTAP11-1Q8IUC1 163 aa10.9□□□□□ -0.66
COL7A1-205ENST00000465238 GAGE10A6NGK3 116 aa10.89□□□□□ -0.67
COL7A1-205ENST00000465238 VPREB1P12018 145 aa10.89□□□□□ -0.67
COL7A1-205ENST00000465238 DAND5Q8N907 189 aa10.89□□□□□ -0.67
COL7A1-205ENST00000465238 LINC00167Q96N53 147 aa10.89□□□□□ -0.67
COL7A1-205ENST00000465238 HSBP1L1C9JCN9 74 aa10.88□□□□□ -0.67
COL7A1-205ENST00000465238 BOD1L2Q8IYS8 172 aa10.88□□□□□ -0.67
COL7A1-205ENST00000465238 TTTY13Q9BZ97 58 aa10.88□□□□□ -0.67
COL7A1-205ENST00000465238 REG3GQ6UW15 175 aa10.87□□□□□ -0.67
COL7A1-205ENST00000465238 RPL37AP8A6NKH3 93 aa10.86□□□□□ -0.67
COL7A1-205ENST00000465238 MIEN1Q9BRT3 115 aa10.86□□□□□ -0.67
COL7A1-205ENST00000465238 TMA7Q9Y2S6 64 aaKnown RBP10.86□□□□□ -0.67
COL7A1-205ENST00000465238 LRP2P98164 4655 aa10.85□□□□□ -0.67
COL7A1-205ENST00000465238 SRSF9Q13242 221 aaKnown RBP eCLIP10.85□□□□□ -0.67
COL7A1-205ENST00000465238 Q8NDZ9 215 aa10.85□□□□□ -0.67
COL7A1-205ENST00000465238 TIMM17BO60830 172 aa10.84□□□□□ -0.67
COL7A1-205ENST00000465238 ADAMTSL4-AS1Q5T5F5 129 aa10.84□□□□□ -0.67
COL7A1-205ENST00000465238 LOC107984156A0A0G2JMH3 177 aa10.83□□□□□ -0.68
COL7A1-205ENST00000465238 M0R378 163 aa10.83□□□□□ -0.68
COL7A1-205ENST00000465238 IGLV7-43P04211 117 aa10.83□□□□□ -0.68
COL7A1-205ENST00000465238 SCGB1D4Q6XE38 83 aa10.83□□□□□ -0.68
COL7A1-205ENST00000465238 ARL17AQ8IVW1 177 aa10.83□□□□□ -0.68
COL7A1-205ENST00000465238 KRTAP10-8P60410 259 aa10.82□□□□□ -0.68
COL7A1-205ENST00000465238 PCP2Q8IVA1 136 aa10.82□□□□□ -0.68
COL7A1-205ENST00000465238 IGKV2-28A0A075B6P5 120 aa10.81□□□□□ -0.68
COL7A1-205ENST00000465238 IGKV2D-28P01615 120 aa10.81□□□□□ -0.68
COL7A1-205ENST00000465238 NPC2P61916 151 aa10.81□□□□□ -0.68
COL7A1-205ENST00000465238 IGLV1-50A0A075B6I6 118 aa10.8□□□□□ -0.68
COL7A1-205ENST00000465238 NCR3O14931 201 aa10.8□□□□□ -0.68
COL7A1-205ENST00000465238 LITAFQ99732 161 aa10.8□□□□□ -0.68
COL7A1-205ENST00000465238 TMEM238C9JI98 176 aa10.78□□□□□ -0.68
COL7A1-205ENST00000465238 BCE1O60756 84 aa10.78□□□□□ -0.68
COL7A1-205ENST00000465238 NDUFC2O95298 119 aa10.77□□□□□ -0.69
COL7A1-205ENST00000465238 SOSTDC1Q6X4U4 206 aa10.77□□□□□ -0.69
COL7A1-205ENST00000465238 LINC00308Q8TCZ7 52 aa10.77□□□□□ -0.69
COL7A1-205ENST00000465238 JOSD1Q15040 202 aaPredicted RBP10.76□□□□□ -0.69
COL7A1-205ENST00000465238 DIRC1Q969H9 104 aa10.76□□□□□ -0.69
COL7A1-205ENST00000465238 SPANXB1Q9NS25 103 aaPredicted RBP10.76□□□□□ -0.69
COL7A1-205ENST00000465238 TRBV10-2A0A0K0K1G8 114 aa10.75□□□□□ -0.69
COL7A1-205ENST00000465238 EIF4EBP3O60516 100 aaPredicted RBP10.75□□□□□ -0.69
COL7A1-205ENST00000465238 ZNF861PO60384 105 aa10.74□□□□□ -0.69
COL7A1-205ENST00000465238 RPL28P46779 137 aaKnown RBP10.74□□□□□ -0.69
COL7A1-205ENST00000465238 S100A12P80511 92 aa10.74□□□□□ -0.69
COL7A1-205ENST00000465238 COPS9Q8WXC6 57 aa10.74□□□□□ -0.69
COL7A1-205ENST00000465238 SPANXDQ9BXN6 97 aa10.74□□□□□ -0.69
COL7A1-205ENST00000465238 TMEM126AQ9H061 195 aa10.74□□□□□ -0.69
COL7A1-205ENST00000465238 SPANXCQ9NY87 97 aa10.74□□□□□ -0.69
COL7A1-205ENST00000465238 UBE2AP49459 152 aa10.73□□□□□ -0.69
COL7A1-205ENST00000465238 TRBV10-3A0A0K0K1G6 114 aa10.72□□□□□ -0.69
COL7A1-205ENST00000465238 S100A7L2Q5SY68 101 aa10.72□□□□□ -0.69
COL7A1-205ENST00000465238 Q6ZVH6 145 aa10.72□□□□□ -0.69
COL7A1-205ENST00000465238 RNF213Q63HN8 5207 aa10.72□□□□□ -0.69
COL7A1-205ENST00000465238 H0Y9J4 135 aa10.71□□□□□ -0.69
COL7A1-205ENST00000465238 PRYO14603 147 aa10.71□□□□□ -0.69
COL7A1-205ENST00000465238 IFITM1P13164 125 aa10.71□□□□□ -0.69
COL7A1-205ENST00000465238 DDTP30046 118 aa10.71□□□□□ -0.69
COL7A1-205ENST00000465238 FAM19A1Q7Z5A9 133 aa10.71□□□□□ -0.69
COL7A1-205ENST00000465238 VAMP8Q9BV40 100 aa10.71□□□□□ -0.69
COL7A1-205ENST00000465238 KCNQ1DNQ9H478 68 aa10.7□□□□□ -0.7
COL7A1-205ENST00000465238 PAM16Q9Y3D7 125 aa10.7□□□□□ -0.7
COL7A1-205ENST00000465238 COX8AP10176 69 aa10.69□□□□□ -0.7
COL7A1-205ENST00000465238 SPATA45Q537H7 98 aa10.69□□□□□ -0.7
COL7A1-205ENST00000465238 MUSTN1Q8IVN3 82 aa10.68□□□□□ -0.7
COL7A1-205ENST00000465238 LINC00518Q8N0U6 118 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms