RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 E9PLD3 99 aa14.15□□□□□ -0.14
CCDC28B-203ENST00000461819 SMIM13P0DJ93 91 aa14.15□□□□□ -0.14
CCDC28B-203ENST00000461819 NMUP48645 174 aa14.15□□□□□ -0.14
CCDC28B-203ENST00000461819 LINC00587B1AMM8 73 aa14.14□□□□□ -0.15
CCDC28B-203ENST00000461819 LBHQ53QV2 105 aaPredicted RBP14.14□□□□□ -0.15
CCDC28B-203ENST00000461819 NKAPP1Q8N9T2 125 aa14.14□□□□□ -0.15
CCDC28B-203ENST00000461819 HIST1H2BLQ99880 126 aa14.14□□□□□ -0.15
CCDC28B-203ENST00000461819 C1orf137Q5JT78 98 aa14.13□□□□□ -0.15
CCDC28B-203ENST00000461819 MRPL55Q7Z7F7 128 aaKnown RBP14.13□□□□□ -0.15
CCDC28B-203ENST00000461819 TP73-AS1Q9UF72 201 aa14.13□□□□□ -0.15
CCDC28B-203ENST00000461819 MYCBP2O75592 4640 aa14.12□□□□□ -0.15
CCDC28B-203ENST00000461819 KRTAP11-1Q8IUC1 163 aa14.11□□□□□ -0.15
CCDC28B-203ENST00000461819 SNRPEP62304 92 aaKnown RBP14.1□□□□□ -0.15
CCDC28B-203ENST00000461819 IGLV5-37A0A075B6J1 123 aa14.09□□□□□ -0.15
CCDC28B-203ENST00000461819 AKR1D1P51857 326 aa14.09□□□□□ -0.15
CCDC28B-203ENST00000461819 RPL24P83731 157 aaKnown RBP14.09□□□□□ -0.15
CCDC28B-203ENST00000461819 MIR7-3HGQ8N6C7 128 aa14.09□□□□□ -0.15
CCDC28B-203ENST00000461819 GAGE10A6NGK3 116 aa14.08□□□□□ -0.16
CCDC28B-203ENST00000461819 ATOH7Q8N100 152 aa14.07□□□□□ -0.16
CCDC28B-203ENST00000461819 VPREB1P12018 145 aa14.06□□□□□ -0.16
CCDC28B-203ENST00000461819 LINC00167Q96N53 147 aa14.06□□□□□ -0.16
CCDC28B-203ENST00000461819 RPL37AP8A6NKH3 93 aa14.05□□□□□ -0.16
CCDC28B-203ENST00000461819 IGKV2D-26A0A0A0MRZ7 120 aa14.04□□□□□ -0.16
CCDC28B-203ENST00000461819 SPINK6Q6UWN8 80 aa14.04□□□□□ -0.16
CCDC28B-203ENST00000461819 DAND5Q8N907 189 aa14.04□□□□□ -0.16
CCDC28B-203ENST00000461819 A0A0J9YXY3 114 aa14.03□□□□□ -0.16
CCDC28B-203ENST00000461819 C5orf52A6NGY3 159 aa14.03□□□□□ -0.16
CCDC28B-203ENST00000461819 IGLV7-43P04211 117 aa14.03□□□□□ -0.16
CCDC28B-203ENST00000461819 BOD1L2Q8IYS8 172 aa14.02□□□□□ -0.17
CCDC28B-203ENST00000461819 Q8NDZ9 215 aa14.02□□□□□ -0.17
CCDC28B-203ENST00000461819 ZNF815PA8K554 130 aa14.01□□□□□ -0.17
CCDC28B-203ENST00000461819 KRTAP29-1A8MX34 341 aaPredicted RBP14□□□□□ -0.17
CCDC28B-203ENST00000461819 J3QL48 77 aa14□□□□□ -0.17
CCDC28B-203ENST00000461819 SRSF9Q13242 221 aaKnown RBP eCLIP14□□□□□ -0.17
CCDC28B-203ENST00000461819 FAT3Q8TDW7 4589 aa14□□□□□ -0.17
CCDC28B-203ENST00000461819 IGKV2-28A0A075B6P5 120 aa13.99□□□□□ -0.17
CCDC28B-203ENST00000461819 OXTP01178 125 aa13.99□□□□□ -0.17
CCDC28B-203ENST00000461819 IGKV2D-28P01615 120 aa13.99□□□□□ -0.17
CCDC28B-203ENST00000461819 ANKRD39Q53RE8 183 aa13.99□□□□□ -0.17
CCDC28B-203ENST00000461819 MIEN1Q9BRT3 115 aa13.99□□□□□ -0.17
CCDC28B-203ENST00000461819 TTTY13Q9BZ97 58 aa13.98□□□□□ -0.17
CCDC28B-203ENST00000461819 LRP1Q07954 4544 aaKnown RBP13.97□□□□□ -0.17
CCDC28B-203ENST00000461819 M0R378 163 aa13.95□□□□□ -0.18
CCDC28B-203ENST00000461819 NCR3O14931 201 aa13.95□□□□□ -0.18
CCDC28B-203ENST00000461819 REG3GQ6UW15 175 aa13.95□□□□□ -0.18
CCDC28B-203ENST00000461819 IGLV1-50A0A075B6I6 118 aa13.94□□□□□ -0.18
CCDC28B-203ENST00000461819 HSBP1L1C9JCN9 74 aa13.94□□□□□ -0.18
CCDC28B-203ENST00000461819 BCE1O60756 84 aa13.94□□□□□ -0.18
CCDC28B-203ENST00000461819 SCGB1D1O95968 90 aa13.94□□□□□ -0.18
CCDC28B-203ENST00000461819 NPC2P61916 151 aa13.94□□□□□ -0.18
CCDC28B-203ENST00000461819 DIRC1Q969H9 104 aa13.94□□□□□ -0.18
CCDC28B-203ENST00000461819 DMBT1Q9UGM3 2413 aaPredicted RBP13.93□□□□□ -0.18
CCDC28B-203ENST00000461819 LOC107984156A0A0G2JMH3 177 aa13.93□□□□□ -0.18
CCDC28B-203ENST00000461819 ADAMTSL4-AS1Q5T5F5 129 aa13.93□□□□□ -0.18
CCDC28B-203ENST00000461819 ARL17AQ8IVW1 177 aa13.93□□□□□ -0.18
CCDC28B-203ENST00000461819 TIMM17BO60830 172 aa13.92□□□□□ -0.18
CCDC28B-203ENST00000461819 SCGB1D4Q6XE38 83 aa13.92□□□□□ -0.18
CCDC28B-203ENST00000461819 LITAFQ99732 161 aa13.9□□□□□ -0.18
CCDC28B-203ENST00000461819 TMEM238C9JI98 176 aa13.89□□□□□ -0.19
CCDC28B-203ENST00000461819 H0Y9J4 135 aa13.89□□□□□ -0.19
CCDC28B-203ENST00000461819 ZNF861PO60384 105 aa13.89□□□□□ -0.19
CCDC28B-203ENST00000461819 RPL28P46779 137 aaKnown RBP13.89□□□□□ -0.19
CCDC28B-203ENST00000461819 PCP2Q8IVA1 136 aa13.89□□□□□ -0.19
CCDC28B-203ENST00000461819 UBE2AP49459 152 aa13.88□□□□□ -0.19
CCDC28B-203ENST00000461819 SOSTDC1Q6X4U4 206 aa13.88□□□□□ -0.19
CCDC28B-203ENST00000461819 TMEM126AQ9H061 195 aa13.88□□□□□ -0.19
CCDC28B-203ENST00000461819 SPANXB1Q9NS25 103 aaPredicted RBP13.87□□□□□ -0.19
CCDC28B-203ENST00000461819 TMA7Q9Y2S6 64 aaKnown RBP13.87□□□□□ -0.19
CCDC28B-203ENST00000461819 NDUFC2O95298 119 aa13.86□□□□□ -0.19
CCDC28B-203ENST00000461819 TRBV10-2A0A0K0K1G8 114 aa13.85□□□□□ -0.19
CCDC28B-203ENST00000461819 EIF4EBP3O60516 100 aaPredicted RBP13.85□□□□□ -0.19
CCDC28B-203ENST00000461819 LINC00308Q8TCZ7 52 aa13.85□□□□□ -0.19
CCDC28B-203ENST00000461819 FAM19A1Q7Z5A9 133 aa13.84□□□□□ -0.19
CCDC28B-203ENST00000461819 LINC01600Q96MT4 127 aa13.84□□□□□ -0.19
CCDC28B-203ENST00000461819 TRBV10-3A0A0K0K1G6 114 aa13.83□□□□□ -0.2
CCDC28B-203ENST00000461819 S100A12P80511 92 aa13.83□□□□□ -0.2
CCDC28B-203ENST00000461819 PRYO14603 147 aa13.82□□□□□ -0.2
CCDC28B-203ENST00000461819 DDTP30046 118 aa13.81□□□□□ -0.2
CCDC28B-203ENST00000461819 PRLHP81277 87 aa13.81□□□□□ -0.2
CCDC28B-203ENST00000461819 S100A7L2Q5SY68 101 aa13.81□□□□□ -0.2
CCDC28B-203ENST00000461819 SPANXDQ9BXN6 97 aa13.81□□□□□ -0.2
CCDC28B-203ENST00000461819 SPANXCQ9NY87 97 aa13.81□□□□□ -0.2
CCDC28B-203ENST00000461819 MT1HL1P0DM35 61 aa13.79□□□□□ -0.2
CCDC28B-203ENST00000461819 KRTAP13-1Q8IUC0 172 aa13.79□□□□□ -0.2
CCDC28B-203ENST00000461819 KCNQ1DNQ9H478 68 aa13.79□□□□□ -0.2
CCDC28B-203ENST00000461819 COPS9Q8WXC6 57 aa13.78□□□□□ -0.2
CCDC28B-203ENST00000461819 HERC1Q15751 4861 aa13.78□□□□□ -0.2
CCDC28B-203ENST00000461819 Q6ZVH6 145 aa13.76□□□□□ -0.21
CCDC28B-203ENST00000461819 TNXBP22105 4242 aa13.75□□□□□ -0.21
CCDC28B-203ENST00000461819 ETDCA0A1B0GVM5 59 aa13.75□□□□□ -0.21
CCDC28B-203ENST00000461819 IGLV6-57P01721 117 aa13.74□□□□□ -0.21
CCDC28B-203ENST00000461819 IFITM1P13164 125 aa13.74□□□□□ -0.21
CCDC28B-203ENST00000461819 JOSD1Q15040 202 aaPredicted RBP13.74□□□□□ -0.21
CCDC28B-203ENST00000461819 SPRR1AP35321 89 aa13.73□□□□□ -0.21
CCDC28B-203ENST00000461819 LINC00337Q8N6G1 96 aa13.73□□□□□ -0.21
CCDC28B-203ENST00000461819 KRTAP1-4P0C5Y4 121 aa13.72□□□□□ -0.21
CCDC28B-203ENST00000461819 OR13C6PQ8NH95 151 aa13.72□□□□□ -0.21
CCDC28B-203ENST00000461819 PAM16Q9Y3D7 125 aa13.72□□□□□ -0.21
CCDC28B-203ENST00000461819 TRAV23DV6A0A075B6W5 121 aa13.71□□□□□ -0.21
CCDC28B-203ENST00000461819 VAMP8Q9BV40 100 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms