RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 NDUFA12Q9UI09 145 aa7.91□□□□□ -1.14
HDAC4-207ENST00000461113 ERG28Q9UKR5 140 aa7.91□□□□□ -1.14
HDAC4-207ENST00000461113 NMUP48645 174 aa7.9□□□□□ -1.14
HDAC4-207ENST00000461113 LINC00158P58513 81 aa7.9□□□□□ -1.14
HDAC4-207ENST00000461113 HIST1H2BLQ99880 126 aa7.9□□□□□ -1.14
HDAC4-207ENST00000461113 J3QQQ9 107 aa7.89□□□□□ -1.15
HDAC4-207ENST00000461113 HNRNPA3P51991 378 aaKnown RBP7.89□□□□□ -1.15
HDAC4-207ENST00000461113 E9PLD3 99 aa7.88□□□□□ -1.15
HDAC4-207ENST00000461113 RPL37AP61513 92 aaKnown RBP7.88□□□□□ -1.15
HDAC4-207ENST00000461113 FAM19A5Q7Z5A7 132 aaPredicted RBP7.88□□□□□ -1.15
HDAC4-207ENST00000461113 XAGE1AQ9HD64 81 aa7.88□□□□□ -1.15
HDAC4-207ENST00000461113 TNXBP22105 4242 aa7.87□□□□□ -1.15
HDAC4-207ENST00000461113 KRTAP9-6A0A140TA67 174 aa7.87□□□□□ -1.15
HDAC4-207ENST00000461113 A0A1W2PNN7 141 aa7.87□□□□□ -1.15
HDAC4-207ENST00000461113 C5orf52A6NGY3 159 aa7.87□□□□□ -1.15
HDAC4-207ENST00000461113 HSBP1L1C9JCN9 74 aa7.87□□□□□ -1.15
HDAC4-207ENST00000461113 LBHQ53QV2 105 aaPredicted RBP7.87□□□□□ -1.15
HDAC4-207ENST00000461113 M0QXV9 152 aa7.85□□□□□ -1.15
HDAC4-207ENST00000461113 UBE2BP63146 152 aa7.85□□□□□ -1.15
HDAC4-207ENST00000461113 RPL24P83731 157 aaKnown RBP7.85□□□□□ -1.15
HDAC4-207ENST00000461113 C9orf129Q5T035 196 aaKnown RBP7.85□□□□□ -1.15
HDAC4-207ENST00000461113 NKAPP1Q8N9T2 125 aa7.85□□□□□ -1.15
HDAC4-207ENST00000461113 A0A0U1RRA0 63 aa7.84□□□□□ -1.15
HDAC4-207ENST00000461113 SCGB1D1O95968 90 aa7.84□□□□□ -1.15
HDAC4-207ENST00000461113 SMIM13P0DJ93 91 aa7.84□□□□□ -1.15
HDAC4-207ENST00000461113 FAM168BA1KXE4 195 aa7.83□□□□□ -1.16
HDAC4-207ENST00000461113 TSPEAR-AS2P59090 65 aa7.83□□□□□ -1.16
HDAC4-207ENST00000461113 PHF5AQ7RTV0 110 aaKnown RBP7.83□□□□□ -1.16
HDAC4-207ENST00000461113 ATOH7Q8N100 152 aa7.83□□□□□ -1.16
HDAC4-207ENST00000461113 SND1-IT1Q9HBX3 110 aa7.83□□□□□ -1.16
HDAC4-207ENST00000461113 MIEN1Q9BRT3 115 aa7.82□□□□□ -1.16
HDAC4-207ENST00000461113 TP73-AS1Q9UF72 201 aa7.82□□□□□ -1.16
HDAC4-207ENST00000461113 TMA7Q9Y2S6 64 aaKnown RBP7.82□□□□□ -1.16
HDAC4-207ENST00000461113 C22orf24Q9Y442 160 aa7.82□□□□□ -1.16
HDAC4-207ENST00000461113 ZNF815PA8K554 130 aa7.81□□□□□ -1.16
HDAC4-207ENST00000461113 MIR7-3HGQ8N6C7 128 aa7.81□□□□□ -1.16
HDAC4-207ENST00000461113 MRPL55Q7Z7F7 128 aaKnown RBP7.8□□□□□ -1.16
HDAC4-207ENST00000461113 SCGB1D4Q6XE38 83 aa7.79□□□□□ -1.16
HDAC4-207ENST00000461113 IGLV5-37A0A075B6J1 123 aa7.78□□□□□ -1.16
HDAC4-207ENST00000461113 A0A0J9YXY3 114 aa7.78□□□□□ -1.16
HDAC4-207ENST00000461113 PRR3P79522 188 aaKnown RBP7.78□□□□□ -1.16
HDAC4-207ENST00000461113 BOD1L2Q8IYS8 172 aa7.78□□□□□ -1.16
HDAC4-207ENST00000461113 IGKV2D-26A0A0A0MRZ7 120 aa7.77□□□□□ -1.17
HDAC4-207ENST00000461113 TIMM17BO60830 172 aa7.77□□□□□ -1.17
HDAC4-207ENST00000461113 ANKRD39Q53RE8 183 aa7.77□□□□□ -1.17
HDAC4-207ENST00000461113 C1orf137Q5JT78 98 aa7.77□□□□□ -1.17
HDAC4-207ENST00000461113 COPS9Q8WXC6 57 aa7.77□□□□□ -1.17
HDAC4-207ENST00000461113 GAGE10A6NGK3 116 aa7.76□□□□□ -1.17
HDAC4-207ENST00000461113 S100A12P80511 92 aa7.76□□□□□ -1.17
HDAC4-207ENST00000461113 PSORS1C2Q9UIG4 136 aa7.76□□□□□ -1.17
HDAC4-207ENST00000461113 TMEM238C9JI98 176 aa7.75□□□□□ -1.17
HDAC4-207ENST00000461113 VPREB1P12018 145 aa7.75□□□□□ -1.17
HDAC4-207ENST00000461113 KRTAP7-1Q8IUC3 87 aa7.75□□□□□ -1.17
HDAC4-207ENST00000461113 DAND5Q8N907 189 aa7.75□□□□□ -1.17
HDAC4-207ENST00000461113 LINC00167Q96N53 147 aa7.75□□□□□ -1.17
HDAC4-207ENST00000461113 FAT4Q6V0I7 4981 aa7.75□□□□□ -1.17
HDAC4-207ENST00000461113 M0R378 163 aa7.74□□□□□ -1.17
HDAC4-207ENST00000461113 RPL37AP8A6NKH3 93 aa7.73□□□□□ -1.17
HDAC4-207ENST00000461113 JOSD1Q15040 202 aaPredicted RBP7.72□□□□□ -1.17
HDAC4-207ENST00000461113 LCE2AQ5TA79 106 aaPredicted RBP7.72□□□□□ -1.17
HDAC4-207ENST00000461113 Q6ZVH6 145 aa7.72□□□□□ -1.17
HDAC4-207ENST00000461113 PCP2Q8IVA1 136 aa7.72□□□□□ -1.17
HDAC4-207ENST00000461113 VAMP8Q9BV40 100 aa7.72□□□□□ -1.17
HDAC4-207ENST00000461113 TTTY13Q9BZ97 58 aa7.72□□□□□ -1.17
HDAC4-207ENST00000461113 LOC107984156A0A0G2JMH3 177 aa7.71□□□□□ -1.18
HDAC4-207ENST00000461113 NPC2P61916 151 aa7.71□□□□□ -1.18
HDAC4-207ENST00000461113 SPINK6Q6UWN8 80 aa7.71□□□□□ -1.18
HDAC4-207ENST00000461113 ARL17AQ8IVW1 177 aa7.71□□□□□ -1.18
HDAC4-207ENST00000461113 SPANXB1Q9NS25 103 aaPredicted RBP7.71□□□□□ -1.18
HDAC4-207ENST00000461113 CBY1Q9Y3M2 126 aa7.71□□□□□ -1.18
HDAC4-207ENST00000461113 IGKV2-28A0A075B6P5 120 aa7.7□□□□□ -1.18
HDAC4-207ENST00000461113 NCR3O14931 201 aa7.7□□□□□ -1.18
HDAC4-207ENST00000461113 NDUFC2O95298 119 aa7.7□□□□□ -1.18
HDAC4-207ENST00000461113 IGKV2D-28P01615 120 aa7.7□□□□□ -1.18
HDAC4-207ENST00000461113 IGLV7-43P04211 117 aa7.7□□□□□ -1.18
HDAC4-207ENST00000461113 IFITM1P13164 125 aa7.7□□□□□ -1.18
HDAC4-207ENST00000461113 S100A7L2Q5SY68 101 aa7.7□□□□□ -1.18
HDAC4-207ENST00000461113 ADAMTSL4-AS1Q5T5F5 129 aa7.7□□□□□ -1.18
HDAC4-207ENST00000461113 IGLV1-50A0A075B6I6 118 aa7.69□□□□□ -1.18
HDAC4-207ENST00000461113 TRBV10-2A0A0K0K1G8 114 aa7.69□□□□□ -1.18
HDAC4-207ENST00000461113 BCE1O60756 84 aa7.69□□□□□ -1.18
HDAC4-207ENST00000461113 RPL28P46779 137 aaKnown RBP7.69□□□□□ -1.18
HDAC4-207ENST00000461113 UBE2AP49459 152 aa7.69□□□□□ -1.18
HDAC4-207ENST00000461113 SMCPP49901 116 aaPredicted RBP7.69□□□□□ -1.18
HDAC4-207ENST00000461113 SRSF9Q13242 221 aaKnown RBP eCLIP7.69□□□□□ -1.18
HDAC4-207ENST00000461113 REG3GQ6UW15 175 aa7.69□□□□□ -1.18
HDAC4-207ENST00000461113 LINC00308Q8TCZ7 52 aa7.69□□□□□ -1.18
HDAC4-207ENST00000461113 DIRC1Q969H9 104 aa7.69□□□□□ -1.18
HDAC4-207ENST00000461113 SPANXDQ9BXN6 97 aa7.69□□□□□ -1.18
HDAC4-207ENST00000461113 SPANXCQ9NY87 97 aa7.69□□□□□ -1.18
HDAC4-207ENST00000461113 SPATA45Q537H7 98 aa7.68□□□□□ -1.18
HDAC4-207ENST00000461113 LINC00518Q8N0U6 118 aa7.68□□□□□ -1.18
HDAC4-207ENST00000461113 PAM16Q9Y3D7 125 aa7.68□□□□□ -1.18
HDAC4-207ENST00000461113 KRTAP11-1Q8IUC1 163 aa7.67□□□□□ -1.18
HDAC4-207ENST00000461113 LITAFQ99732 161 aa7.67□□□□□ -1.18
HDAC4-207ENST00000461113 PRYO14603 147 aa7.66□□□□□ -1.18
HDAC4-207ENST00000461113 COX8AP10176 69 aa7.66□□□□□ -1.18
HDAC4-207ENST00000461113 DDTP30046 118 aa7.66□□□□□ -1.18
HDAC4-207ENST00000461113 Q8NDZ9 215 aa7.66□□□□□ -1.18
HDAC4-207ENST00000461113 OR13C6PQ8NH95 151 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms