RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 KRTAP11-1Q8IUC1 163 aa17.31■□□□□ 0.36
SMARCC1-203ENST00000454240 TP73-AS1Q9UF72 201 aa17.31■□□□□ 0.36
SMARCC1-203ENST00000454240 PSORS1C2Q9UIG4 136 aa17.31■□□□□ 0.36
SMARCC1-203ENST00000454240 FLG2Q5D862 2391 aaPredicted RBP17.3■□□□□ 0.36
SMARCC1-203ENST00000454240 LINC00587B1AMM8 73 aa17.3■□□□□ 0.36
SMARCC1-203ENST00000454240 MEIG1Q5JSS6 88 aa17.3■□□□□ 0.36
SMARCC1-203ENST00000454240 A0A0U1RRA0 63 aa17.29■□□□□ 0.36
SMARCC1-203ENST00000454240 IGLV5-37A0A075B6J1 123 aa17.28■□□□□ 0.36
SMARCC1-203ENST00000454240 C5orf52A6NGY3 159 aa17.28■□□□□ 0.36
SMARCC1-203ENST00000454240 LBHQ53QV2 105 aaPredicted RBP17.27■□□□□ 0.36
SMARCC1-203ENST00000454240 UBE2BP63146 152 aa17.26■□□□□ 0.35
SMARCC1-203ENST00000454240 MRPL55Q7Z7F7 128 aaKnown RBP17.26■□□□□ 0.35
SMARCC1-203ENST00000454240 MYCBP2O75592 4640 aa17.25■□□□□ 0.35
SMARCC1-203ENST00000454240 AKR1D1P51857 326 aa17.24■□□□□ 0.35
SMARCC1-203ENST00000454240 MIR7-3HGQ8N6C7 128 aa17.23■□□□□ 0.35
SMARCC1-203ENST00000454240 IGKV2D-26A0A0A0MRZ7 120 aa17.22■□□□□ 0.35
SMARCC1-203ENST00000454240 VPREB1P12018 145 aa17.22■□□□□ 0.35
SMARCC1-203ENST00000454240 C1orf137Q5JT78 98 aa17.22■□□□□ 0.35
SMARCC1-203ENST00000454240 ATOH7Q8N100 152 aa17.21■□□□□ 0.35
SMARCC1-203ENST00000454240 NKAPP1Q8N9T2 125 aa17.21■□□□□ 0.35
SMARCC1-203ENST00000454240 LINC00167Q96N53 147 aa17.21■□□□□ 0.35
SMARCC1-203ENST00000454240 RPL24P83731 157 aaKnown RBP17.2■□□□□ 0.34
SMARCC1-203ENST00000454240 SRSF9Q13242 221 aaKnown RBP eCLIP17.2■□□□□ 0.34
SMARCC1-203ENST00000454240 Q8NDZ9 215 aa17.2■□□□□ 0.34
SMARCC1-203ENST00000454240 A0A0J9YXY3 114 aa17.18■□□□□ 0.34
SMARCC1-203ENST00000454240 ANKRD39Q53RE8 183 aa17.16■□□□□ 0.34
SMARCC1-203ENST00000454240 SPINK6Q6UWN8 80 aa17.16■□□□□ 0.34
SMARCC1-203ENST00000454240 GAGE10A6NGK3 116 aa17.15■□□□□ 0.34
SMARCC1-203ENST00000454240 DAND5Q8N907 189 aa17.15■□□□□ 0.34
SMARCC1-203ENST00000454240 LRP1Q07954 4544 aaKnown RBP17.14■□□□□ 0.33
SMARCC1-203ENST00000454240 LOC107984156A0A0G2JMH3 177 aa17.14■□□□□ 0.33
SMARCC1-203ENST00000454240 RPL37AP8A6NKH3 93 aa17.14■□□□□ 0.33
SMARCC1-203ENST00000454240 IGLV7-43P04211 117 aa17.14■□□□□ 0.33
SMARCC1-203ENST00000454240 ARL17AQ8IVW1 177 aa17.14■□□□□ 0.33
SMARCC1-203ENST00000454240 FAT3Q8TDW7 4589 aa17.14■□□□□ 0.33
SMARCC1-203ENST00000454240 KRTAP29-1A8MX34 341 aaPredicted RBP17.13■□□□□ 0.33
SMARCC1-203ENST00000454240 TTTY13Q9BZ97 58 aa17.13■□□□□ 0.33
SMARCC1-203ENST00000454240 ZNF815PA8K554 130 aa17.12■□□□□ 0.33
SMARCC1-203ENST00000454240 BOD1L2Q8IYS8 172 aa17.12■□□□□ 0.33
SMARCC1-203ENST00000454240 ADAMTSL4-AS1Q5T5F5 129 aa17.1■□□□□ 0.33
SMARCC1-203ENST00000454240 OXTP01178 125 aa17.09■□□□□ 0.33
SMARCC1-203ENST00000454240 IGLV1-50A0A075B6I6 118 aa17.08■□□□□ 0.32
SMARCC1-203ENST00000454240 TIMM17BO60830 172 aa17.08■□□□□ 0.32
SMARCC1-203ENST00000454240 LITAFQ99732 161 aa17.08■□□□□ 0.32
SMARCC1-203ENST00000454240 IGKV2-28A0A075B6P5 120 aa17.06■□□□□ 0.32
SMARCC1-203ENST00000454240 M0R378 163 aa17.06■□□□□ 0.32
SMARCC1-203ENST00000454240 IGKV2D-28P01615 120 aa17.06■□□□□ 0.32
SMARCC1-203ENST00000454240 BCE1O60756 84 aa17.03■□□□□ 0.32
SMARCC1-203ENST00000454240 SCGB1D1O95968 90 aa17.03■□□□□ 0.32
SMARCC1-203ENST00000454240 SOSTDC1Q6X4U4 206 aa17.03■□□□□ 0.32
SMARCC1-203ENST00000454240 PCP2Q8IVA1 136 aa17.03■□□□□ 0.32
SMARCC1-203ENST00000454240 MIEN1Q9BRT3 115 aa17.03■□□□□ 0.32
SMARCC1-203ENST00000454240 EIF4EBP3O60516 100 aaPredicted RBP17.01■□□□□ 0.31
SMARCC1-203ENST00000454240 HSBP1L1C9JCN9 74 aa17■□□□□ 0.31
SMARCC1-203ENST00000454240 NCR3O14931 201 aa17■□□□□ 0.31
SMARCC1-203ENST00000454240 ZNF861PO60384 105 aa17■□□□□ 0.31
SMARCC1-203ENST00000454240 DIRC1Q969H9 104 aa17■□□□□ 0.31
SMARCC1-203ENST00000454240 NDUFC2O95298 119 aa16.99■□□□□ 0.31
SMARCC1-203ENST00000454240 NPC2P61916 151 aa16.99■□□□□ 0.31
SMARCC1-203ENST00000454240 J3QL48 77 aa16.98■□□□□ 0.31
SMARCC1-203ENST00000454240 REG3GQ6UW15 175 aa16.98■□□□□ 0.31
SMARCC1-203ENST00000454240 SCGB1D4Q6XE38 83 aa16.97■□□□□ 0.31
SMARCC1-203ENST00000454240 LINC00308Q8TCZ7 52 aa16.97■□□□□ 0.31
SMARCC1-203ENST00000454240 TMEM126AQ9H061 195 aa16.97■□□□□ 0.31
SMARCC1-203ENST00000454240 TRBV10-2A0A0K0K1G8 114 aa16.96■□□□□ 0.31
SMARCC1-203ENST00000454240 TMEM238C9JI98 176 aa16.96■□□□□ 0.31
SMARCC1-203ENST00000454240 H0Y9J4 135 aa16.96■□□□□ 0.31
SMARCC1-203ENST00000454240 SPANXB1Q9NS25 103 aaPredicted RBP16.95■□□□□ 0.3
SMARCC1-203ENST00000454240 LINC01600Q96MT4 127 aa16.94■□□□□ 0.3
SMARCC1-203ENST00000454240 TMA7Q9Y2S6 64 aaKnown RBP16.94■□□□□ 0.3
SMARCC1-203ENST00000454240 DMBT1Q9UGM3 2413 aaPredicted RBP16.94■□□□□ 0.3
SMARCC1-203ENST00000454240 RPL28P46779 137 aaKnown RBP16.93■□□□□ 0.3
SMARCC1-203ENST00000454240 KRTAP13-1Q8IUC0 172 aa16.93■□□□□ 0.3
SMARCC1-203ENST00000454240 SPANXDQ9BXN6 97 aa16.93■□□□□ 0.3
SMARCC1-203ENST00000454240 SPANXCQ9NY87 97 aa16.93■□□□□ 0.3
SMARCC1-203ENST00000454240 TRBV10-3A0A0K0K1G6 114 aa16.91■□□□□ 0.3
SMARCC1-203ENST00000454240 KCNQ1DNQ9H478 68 aa16.91■□□□□ 0.3
SMARCC1-203ENST00000454240 MT1HL1P0DM35 61 aa16.9■□□□□ 0.3
SMARCC1-203ENST00000454240 JOSD1Q15040 202 aaPredicted RBP16.9■□□□□ 0.3
SMARCC1-203ENST00000454240 PRYO14603 147 aa16.89■□□□□ 0.29
SMARCC1-203ENST00000454240 UBE2AP49459 152 aa16.88■□□□□ 0.29
SMARCC1-203ENST00000454240 Q6ZVH6 145 aa16.87■□□□□ 0.29
SMARCC1-203ENST00000454240 FAM19A1Q7Z5A9 133 aa16.87■□□□□ 0.29
SMARCC1-203ENST00000454240 TNXBP22105 4242 aa16.86■□□□□ 0.29
SMARCC1-203ENST00000454240 DDTP30046 118 aa16.86■□□□□ 0.29
SMARCC1-203ENST00000454240 SPRR1AP35321 89 aa16.86■□□□□ 0.29
SMARCC1-203ENST00000454240 IGLV6-57P01721 117 aa16.85■□□□□ 0.29
SMARCC1-203ENST00000454240 IFITM1P13164 125 aa16.84■□□□□ 0.29
SMARCC1-203ENST00000454240 PRLHP81277 87 aa16.84■□□□□ 0.29
SMARCC1-203ENST00000454240 PPDPFQ9H3Y8 114 aa16.84■□□□□ 0.29
SMARCC1-203ENST00000454240 KRTAP1-4P0C5Y4 121 aa16.83■□□□□ 0.28
SMARCC1-203ENST00000454240 S100A7L2Q5SY68 101 aa16.83■□□□□ 0.28
SMARCC1-203ENST00000454240 LINC00337Q8N6G1 96 aa16.82■□□□□ 0.28
SMARCC1-203ENST00000454240 COPS9Q8WXC6 57 aa16.82■□□□□ 0.28
SMARCC1-203ENST00000454240 KRTAP4-16G5E9R7 235 aaPredicted RBP16.81■□□□□ 0.28
SMARCC1-203ENST00000454240 KRTAP10-8P60410 259 aa16.81■□□□□ 0.28
SMARCC1-203ENST00000454240 S100A12P80511 92 aa16.81■□□□□ 0.28
SMARCC1-203ENST00000454240 HERC1Q15751 4861 aa16.8■□□□□ 0.28
SMARCC1-203ENST00000454240 COX8AP10176 69 aa16.8■□□□□ 0.28
SMARCC1-203ENST00000454240 MUSTN1Q8IVN3 82 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms