RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 HSBP1L1C9JCN9 74 aa5.6□□□□□ -1.51
SYNE1-214ENST00000454018 CIRBPQ14011 172 aaKnown RBP5.6□□□□□ -1.51
SYNE1-214ENST00000454018 STPG4Q8N801 248 aa5.6□□□□□ -1.51
SYNE1-214ENST00000454018 IGKV2-24A0A0C4DH68 120 aa5.59□□□□□ -1.51
SYNE1-214ENST00000454018 CDK2AP2O75956 126 aa5.59□□□□□ -1.51
SYNE1-214ENST00000454018 COX17Q14061 63 aa5.59□□□□□ -1.51
SYNE1-214ENST00000454018 C9orf116Q5BN46 136 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-214ENST00000454018 SPACA4Q8TDM5 124 aa5.59□□□□□ -1.51
SYNE1-214ENST00000454018 ERG28Q9UKR5 140 aa5.59□□□□□ -1.51
SYNE1-214ENST00000454018 EPPK1P58107 5090 aaKnown RBP5.59□□□□□ -1.51
SYNE1-214ENST00000454018 JOSD1Q15040 202 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-214ENST00000454018 Q6ZRP5 223 aa5.58□□□□□ -1.52
SYNE1-214ENST00000454018 IGLV5-37A0A075B6J1 123 aa5.58□□□□□ -1.52
SYNE1-214ENST00000454018 IGKV2D-26A0A0A0MRZ7 120 aa5.58□□□□□ -1.52
SYNE1-214ENST00000454018 LINC00587B1AMM8 73 aa5.58□□□□□ -1.52
SYNE1-214ENST00000454018 CHTF8P0CG12 524 aa5.58□□□□□ -1.52
SYNE1-214ENST00000454018 MEIG1Q5JSS6 88 aa5.58□□□□□ -1.52
SYNE1-214ENST00000454018 SCXQ7RTU7 201 aa5.57□□□□□ -1.52
SYNE1-214ENST00000454018 Q8N1X5 172 aa5.57□□□□□ -1.52
SYNE1-214ENST00000454018 ZNF815PA8K554 130 aa5.56□□□□□ -1.52
SYNE1-214ENST00000454018 PANO1I0J062 215 aa5.56□□□□□ -1.52
SYNE1-214ENST00000454018 PFN2P35080 140 aa5.56□□□□□ -1.52
SYNE1-214ENST00000454018 KRTAP4-7Q9BYR0 210 aa5.56□□□□□ -1.52
SYNE1-214ENST00000454018 LRP1BQ9NZR2 4599 aa5.55□□□□□ -1.52
SYNE1-214ENST00000454018 DYNC1H1Q14204 4646 aaKnown RBP5.55□□□□□ -1.52
SYNE1-214ENST00000454018 LINC00158P58513 81 aa5.55□□□□□ -1.52
SYNE1-214ENST00000454018 PYY3Q5JQD4 70 aa5.55□□□□□ -1.52
SYNE1-214ENST00000454018 A0A087WYN8 130 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 A0A0J9YXY3 114 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 SMIM13P0DJ93 91 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 XGP55808 180 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 C9orf129Q5T035 196 aaKnown RBP5.54□□□□□ -1.52
SYNE1-214ENST00000454018 CIRBP-AS1Q8TBR5 109 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 DPH3Q96FX2 82 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 VAMP8Q9BV40 100 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 TTTY13Q9BZ97 58 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 XAGE1AQ9HD64 81 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 PLAC8Q9NZF1 115 aa5.54□□□□□ -1.52
SYNE1-214ENST00000454018 TIMM17BO60830 172 aa5.53□□□□□ -1.52
SYNE1-214ENST00000454018 SCGB1D4Q6XE38 83 aa5.53□□□□□ -1.52
SYNE1-214ENST00000454018 PCP2Q8IVA1 136 aa5.53□□□□□ -1.52
SYNE1-214ENST00000454018 SND1-IT1Q9HBX3 110 aa5.53□□□□□ -1.52
SYNE1-214ENST00000454018 HAMPP81172 84 aa5.53□□□□□ -1.52
SYNE1-214ENST00000454018 MIR7-3HGQ8N6C7 128 aa5.53□□□□□ -1.52
SYNE1-214ENST00000454018 IGLV9-49A0A0B4J1Y8 123 aa5.52□□□□□ -1.53
SYNE1-214ENST00000454018 EPM2AB3EWF7 344 aa5.52□□□□□ -1.53
SYNE1-214ENST00000454018 TMEM238C9JI98 176 aa5.52□□□□□ -1.53
SYNE1-214ENST00000454018 SPATA45Q537H7 98 aa5.52□□□□□ -1.53
SYNE1-214ENST00000454018 FAM19A5Q7Z5A7 132 aaPredicted RBP5.52□□□□□ -1.53
SYNE1-214ENST00000454018 A0A1W2PNN7 141 aa5.51□□□□□ -1.53
SYNE1-214ENST00000454018 FAM168BA1KXE4 195 aa5.51□□□□□ -1.53
SYNE1-214ENST00000454018 COX8AP10176 69 aa5.51□□□□□ -1.53
SYNE1-214ENST00000454018 LITAFQ99732 161 aa5.51□□□□□ -1.53
SYNE1-214ENST00000454018 MIEN1Q9BRT3 115 aa5.51□□□□□ -1.53
SYNE1-214ENST00000454018 DNAH8Q96JB1 4490 aa5.51□□□□□ -1.53
SYNE1-214ENST00000454018 M0QXV9 152 aa5.5□□□□□ -1.53
SYNE1-214ENST00000454018 SMIM6P0DI80 62 aa5.5□□□□□ -1.53
SYNE1-214ENST00000454018 BOD1L2Q8IYS8 172 aa5.5□□□□□ -1.53
SYNE1-214ENST00000454018 DAND5Q8N907 189 aa5.5□□□□□ -1.53
SYNE1-214ENST00000454018 TP73-AS1Q9UF72 201 aa5.5□□□□□ -1.53
SYNE1-214ENST00000454018 APOBP04114 4563 aaKnown RBP5.5□□□□□ -1.53
SYNE1-214ENST00000454018 LOC107984156A0A0G2JMH3 177 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 DLEU1O43261 78 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 S100A12P80511 92 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 Q6ZVH6 145 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 ARL17AQ8IVW1 177 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 NKAPP1Q8N9T2 125 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 C7orf33Q8WU49 177 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 COPS9Q8WXC6 57 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 SPANXDQ9BXN6 97 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 SPANXCQ9NY87 97 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 BIRC6Q9NR09 4857 aa5.49□□□□□ -1.53
SYNE1-214ENST00000454018 ADAMTSL4-AS1Q5T5F5 129 aa5.48□□□□□ -1.53
SYNE1-214ENST00000454018 KRTAP7-1Q8IUC3 87 aa5.48□□□□□ -1.53
SYNE1-214ENST00000454018 KIAA1109Q2LD37 5005 aa5.48□□□□□ -1.53
SYNE1-214ENST00000454018 LOC105371267A0A1B0GV96 52 aa5.48□□□□□ -1.53
SYNE1-214ENST00000454018 SLC25A34Q6PIV7 304 aa5.48□□□□□ -1.53
SYNE1-214ENST00000454018 MRPL55Q7Z7F7 128 aaKnown RBP5.48□□□□□ -1.53
SYNE1-214ENST00000454018 PPDPFQ9H3Y8 114 aa5.48□□□□□ -1.53
SYNE1-214ENST00000454018 SPANXB1Q9NS25 103 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-214ENST00000454018 NDUFC2O95298 119 aa5.47□□□□□ -1.53
SYNE1-214ENST00000454018 SMR3BP02814 79 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-214ENST00000454018 IFITM1P13164 125 aa5.47□□□□□ -1.53
SYNE1-214ENST00000454018 PHF5AQ7RTV0 110 aaKnown RBP5.47□□□□□ -1.53
SYNE1-214ENST00000454018 LINC00308Q8TCZ7 52 aa5.47□□□□□ -1.53
SYNE1-214ENST00000454018 C14orf144Q96I85 54 aa5.47□□□□□ -1.53
SYNE1-214ENST00000454018 C22orf24Q9Y442 160 aa5.47□□□□□ -1.53
SYNE1-214ENST00000454018 HSPG2P98160 4391 aa5.47□□□□□ -1.53
SYNE1-214ENST00000454018 NPC2P61916 151 aa5.46□□□□□ -1.54
SYNE1-214ENST00000454018 UBE2BP63146 152 aa5.46□□□□□ -1.54
SYNE1-214ENST00000454018 SOSTDC1Q6X4U4 206 aa5.46□□□□□ -1.54
SYNE1-214ENST00000454018 Q8NDZ9 215 aa5.46□□□□□ -1.54
SYNE1-214ENST00000454018 TRBV10-2A0A0K0K1G8 114 aa5.45□□□□□ -1.54
SYNE1-214ENST00000454018 SRSF9Q13242 221 aaKnown RBP eCLIP5.45□□□□□ -1.54
SYNE1-214ENST00000454018 Q5VSD8 79 aa5.45□□□□□ -1.54
SYNE1-214ENST00000454018 HIGD1BQ9P298 99 aa5.45□□□□□ -1.54
SYNE1-214ENST00000454018 RYR1P21817 5038 aa5.45□□□□□ -1.54
SYNE1-214ENST00000454018 M0R378 163 aa5.44□□□□□ -1.54
SYNE1-214ENST00000454018 NCR3O14931 201 aa5.44□□□□□ -1.54
SYNE1-214ENST00000454018 RPL37AP61513 92 aaKnown RBP5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms