RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 TRAV12-1A0A0B4J245 112 aa12.17□□□□□ -0.46
SDC1-205ENST00000447124 RPL24P83731 157 aaKnown RBP12.17□□□□□ -0.46
SDC1-205ENST00000447124 TMEM126AQ9H061 195 aa12.17□□□□□ -0.46
SDC1-205ENST00000447124 M0R378 163 aa12.16□□□□□ -0.46
SDC1-205ENST00000447124 PRLHP81277 87 aa12.16□□□□□ -0.46
SDC1-205ENST00000447124 A0A0U1RRA0 63 aa12.15□□□□□ -0.46
SDC1-205ENST00000447124 LINC00158P58513 81 aa12.15□□□□□ -0.46
SDC1-205ENST00000447124 SFTA2Q6UW10 78 aa12.15□□□□□ -0.46
SDC1-205ENST00000447124 FAM19A1Q7Z5A9 133 aa12.14□□□□□ -0.47
SDC1-205ENST00000447124 CBLN2Q8IUK8 224 aa12.14□□□□□ -0.47
SDC1-205ENST00000447124 FAM19A2Q8N3H0 131 aa12.14□□□□□ -0.47
SDC1-205ENST00000447124 FAM229BQ4G0N7 80 aa12.12□□□□□ -0.47
SDC1-205ENST00000447124 SMIM13P0DJ93 91 aa12.1□□□□□ -0.47
SDC1-205ENST00000447124 PLEKHB2Q96CS7 222 aa12.09□□□□□ -0.47
SDC1-205ENST00000447124 HSBP1O75506 76 aa12.08□□□□□ -0.48
SDC1-205ENST00000447124 TRGC2P03986 189 aa12.08□□□□□ -0.48
SDC1-205ENST00000447124 LINC00310P59036 64 aa12.08□□□□□ -0.48
SDC1-205ENST00000447124 MUC2Q02817 5179 aa12.07□□□□□ -0.48
SDC1-205ENST00000447124 MIR7-3HGQ8N6C7 128 aa12.05□□□□□ -0.48
SDC1-205ENST00000447124 IGKV2D-26A0A0A0MRZ7 120 aa12.03□□□□□ -0.48
SDC1-205ENST00000447124 H0Y8G0 127 aa12.03□□□□□ -0.48
SDC1-205ENST00000447124 SERF1AO75920 110 aa12.03□□□□□ -0.48
SDC1-205ENST00000447124 MEIG1Q5JSS6 88 aa12.03□□□□□ -0.48
SDC1-205ENST00000447124 BOD1L2Q8IYS8 172 aa12.03□□□□□ -0.48
SDC1-205ENST00000447124 LINC00304Q8N9R0 145 aa12.03□□□□□ -0.48
SDC1-205ENST00000447124 NDUFA12Q9UI09 145 aa12.03□□□□□ -0.48
SDC1-205ENST00000447124 ATP6V1G1O75348 118 aa12.02□□□□□ -0.49
SDC1-205ENST00000447124 TSPEAR-AS2P59090 65 aa12.02□□□□□ -0.49
SDC1-205ENST00000447124 HERV-K104P63124 156 aa12.02□□□□□ -0.49
SDC1-205ENST00000447124 C3orf22Q8N5N4 141 aa12.02□□□□□ -0.49
SDC1-205ENST00000447124 HIGD2AQ9BW72 106 aa12.02□□□□□ -0.49
SDC1-205ENST00000447124 LEPROTL1O95214 131 aa12.01□□□□□ -0.49
SDC1-205ENST00000447124 NCR3O14931 201 aa12□□□□□ -0.49
SDC1-205ENST00000447124 SLC7A5P1Q8MH63 180 aa12□□□□□ -0.49
SDC1-205ENST00000447124 RETNLBQ9BQ08 111 aa12□□□□□ -0.49
SDC1-205ENST00000447124 MYMXA0A1B0GTQ4 84 aa11.99□□□□□ -0.49
SDC1-205ENST00000447124 SPRR1AP35321 89 aa11.99□□□□□ -0.49
SDC1-205ENST00000447124 SPRR4Q96PI1 79 aa11.98□□□□□ -0.49
SDC1-205ENST00000447124 KCNQ1DNQ9H478 68 aa11.98□□□□□ -0.49
SDC1-205ENST00000447124 COLCA2A8K830 154 aa11.97□□□□□ -0.49
SDC1-205ENST00000447124 KRTAP4-16G5E9R7 235 aaPredicted RBP11.97□□□□□ -0.49
SDC1-205ENST00000447124 PRYO14603 147 aa11.97□□□□□ -0.49
SDC1-205ENST00000447124 LEPROTO15243 131 aa11.97□□□□□ -0.49
SDC1-205ENST00000447124 LINC00587B1AMM8 73 aa11.96□□□□□ -0.49
SDC1-205ENST00000447124 FABP4P15090 132 aa11.96□□□□□ -0.49
SDC1-205ENST00000447124 PMCHL2Q9BQD1 86 aa11.96□□□□□ -0.49
SDC1-205ENST00000447124 TRBV10-3A0A0K0K1G6 114 aa11.95□□□□□ -0.5
SDC1-205ENST00000447124 LINC00337Q8N6G1 96 aa11.95□□□□□ -0.5
SDC1-205ENST00000447124 DAND5Q8N907 189 aa11.95□□□□□ -0.5
SDC1-205ENST00000447124 SMCR5Q8TEV8 140 aa11.95□□□□□ -0.5
SDC1-205ENST00000447124 LOC107984156A0A0G2JMH3 177 aa11.94□□□□□ -0.5
SDC1-205ENST00000447124 ARL17AQ8IVW1 177 aa11.94□□□□□ -0.5
SDC1-205ENST00000447124 MAP1LC3CQ9BXW4 147 aa11.94□□□□□ -0.5
SDC1-205ENST00000447124 HSPB8Q9UJY1 196 aa11.93□□□□□ -0.5
SDC1-205ENST00000447124 MUC17Q685J3 4493 aa11.93□□□□□ -0.5
SDC1-205ENST00000447124 J3QQQ9 107 aa11.92□□□□□ -0.5
SDC1-205ENST00000447124 PLNP26678 52 aa11.92□□□□□ -0.5
SDC1-205ENST00000447124 DPM2O94777 84 aa11.91□□□□□ -0.5
SDC1-205ENST00000447124 CTAG1AP78358 180 aa11.91□□□□□ -0.5
SDC1-205ENST00000447124 ETDCA0A1B0GVM5 59 aa11.89□□□□□ -0.51
SDC1-205ENST00000447124 IGKCP01834 107 aa11.89□□□□□ -0.51
SDC1-205ENST00000447124 PPDPFQ9H3Y8 114 aa11.89□□□□□ -0.51
SDC1-205ENST00000447124 ZNF706Q9Y5V0 76 aaPredicted RBP11.88□□□□□ -0.51
SDC1-205ENST00000447124 IGLV7-46A0A075B6I9 117 aa11.87□□□□□ -0.51
SDC1-205ENST00000447124 B5MCH6 92 aa11.87□□□□□ -0.51
SDC1-205ENST00000447124 TRBV10-2A0A0K0K1G8 114 aa11.86□□□□□ -0.51
SDC1-205ENST00000447124 ERC2-IT1O76042 136 aa11.86□□□□□ -0.51
SDC1-205ENST00000447124 HERVK_113P61574 105 aa11.86□□□□□ -0.51
SDC1-205ENST00000447124 EIF4EBP3O60516 100 aaPredicted RBP11.85□□□□□ -0.51
SDC1-205ENST00000447124 LGALS3P17931 250 aaKnown RBP11.85□□□□□ -0.51
SDC1-205ENST00000447124 DDTP30046 118 aa11.85□□□□□ -0.51
SDC1-205ENST00000447124 NMUP48645 174 aa11.85□□□□□ -0.51
SDC1-205ENST00000447124 SPAG11AQ6PDA7 123 aa11.85□□□□□ -0.51
SDC1-205ENST00000447124 FAT4Q6V0I7 4981 aa11.85□□□□□ -0.51
SDC1-205ENST00000447124 ADAMTSL4-AS1Q5T5F5 129 aa11.84□□□□□ -0.51
SDC1-205ENST00000447124 SOSTDC1Q6X4U4 206 aa11.84□□□□□ -0.51
SDC1-205ENST00000447124 TPRXLQ17RH7 258 aa11.83□□□□□ -0.52
SDC1-205ENST00000447124 LINC00483Q53H64 154 aa11.83□□□□□ -0.52
SDC1-205ENST00000447124 Q8NBF4 154 aa11.83□□□□□ -0.52
SDC1-205ENST00000447124 GAGE2AQ6NT46 116 aa11.82□□□□□ -0.52
SDC1-205ENST00000447124 Q9BRP9 147 aa11.82□□□□□ -0.52
SDC1-205ENST00000447124 A0A0J9YXY3 114 aa11.81□□□□□ -0.52
SDC1-205ENST00000447124 NDUFC2O95298 119 aa11.81□□□□□ -0.52
SDC1-205ENST00000447124 IGLV6-57P01721 117 aa11.81□□□□□ -0.52
SDC1-205ENST00000447124 SPANXB1Q9NS25 103 aaPredicted RBP11.81□□□□□ -0.52
SDC1-205ENST00000447124 E9PLD3 99 aa11.8□□□□□ -0.52
SDC1-205ENST00000447124 CDIP1Q9H305 208 aa11.8□□□□□ -0.52
SDC1-205ENST00000447124 NPC2P61916 151 aa11.79□□□□□ -0.52
SDC1-205ENST00000447124 S100A12P80511 92 aa11.79□□□□□ -0.52
SDC1-205ENST00000447124 C4orf48Q5BLP8 95 aa11.79□□□□□ -0.52
SDC1-205ENST00000447124 HIST1H2BKO60814 126 aa11.78□□□□□ -0.52
SDC1-205ENST00000447124 HIST1H2BJP06899 126 aa11.78□□□□□ -0.52
SDC1-205ENST00000447124 HIST1H2BOP23527 126 aa11.78□□□□□ -0.52
SDC1-205ENST00000447124 HIST1H2BBP33778 126 aa11.78□□□□□ -0.52
SDC1-205ENST00000447124 HIST1H2BDP58876 126 aa11.78□□□□□ -0.52
SDC1-205ENST00000447124 HIST1H2BCP62807 126 aa11.78□□□□□ -0.52
SDC1-205ENST00000447124 HIST2H2BEQ16778 126 aa11.78□□□□□ -0.52
SDC1-205ENST00000447124 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.78□□□□□ -0.52
SDC1-205ENST00000447124 HIST1H2BHQ93079 126 aa11.78□□□□□ -0.52
SDC1-205ENST00000447124 HIST1H2BNQ99877 126 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms