RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 CIRBPQ14011 172 aaKnown RBP10.94□□□□□ -0.66
LIME1-202ENST00000444951 SPACA4Q8TDM5 124 aa10.94□□□□□ -0.66
LIME1-202ENST00000444951 C14orf144Q96I85 54 aa10.94□□□□□ -0.66
LIME1-202ENST00000444951 S100A12P80511 92 aa10.93□□□□□ -0.66
LIME1-202ENST00000444951 C9orf129Q5T035 196 aaKnown RBP10.93□□□□□ -0.66
LIME1-202ENST00000444951 MIR7-3HGQ8N6C7 128 aa10.93□□□□□ -0.66
LIME1-202ENST00000444951 SND1-IT1Q9HBX3 110 aa10.93□□□□□ -0.66
LIME1-202ENST00000444951 LINC00474Q9P2X8 69 aa10.93□□□□□ -0.66
LIME1-202ENST00000444951 FAM168BA1KXE4 195 aa10.91□□□□□ -0.66
LIME1-202ENST00000444951 COX8AP10176 69 aa10.91□□□□□ -0.66
LIME1-202ENST00000444951 NPC2P61916 151 aa10.91□□□□□ -0.66
LIME1-202ENST00000444951 ADAMTSL4-AS1Q5T5F5 129 aa10.91□□□□□ -0.66
LIME1-202ENST00000444951 Q6ZSA8 131 aa10.91□□□□□ -0.66
LIME1-202ENST00000444951 A0A087WYN8 130 aa10.9□□□□□ -0.66
LIME1-202ENST00000444951 SMIM6P0DI80 62 aa10.9□□□□□ -0.66
LIME1-202ENST00000444951 SCXQ7RTU7 201 aa10.9□□□□□ -0.66
LIME1-202ENST00000444951 FAM19A5Q7Z5A7 132 aaPredicted RBP10.9□□□□□ -0.66
LIME1-202ENST00000444951 A0A1W2PNN7 141 aa10.89□□□□□ -0.67
LIME1-202ENST00000444951 BOD1L2Q8IYS8 172 aa10.89□□□□□ -0.67
LIME1-202ENST00000444951 CIRBP-AS1Q8TBR5 109 aa10.89□□□□□ -0.67
LIME1-202ENST00000444951 PKHD1L1Q86WI1 4243 aa10.89□□□□□ -0.67
LIME1-202ENST00000444951 FAM229AH3BQW9 127 aa10.88□□□□□ -0.67
LIME1-202ENST00000444951 TIMM17BO60830 172 aa10.87□□□□□ -0.67
LIME1-202ENST00000444951 SLC25A34Q6PIV7 304 aa10.87□□□□□ -0.67
LIME1-202ENST00000444951 LITAFQ99732 161 aa10.87□□□□□ -0.67
LIME1-202ENST00000444951 FAT3Q8TDW7 4589 aa10.87□□□□□ -0.67
LIME1-202ENST00000444951 TMEM238C9JI98 176 aa10.86□□□□□ -0.67
LIME1-202ENST00000444951 SERTAD4-AS1Q5TG53 156 aa10.86□□□□□ -0.67
LIME1-202ENST00000444951 LRP1Q07954 4544 aaKnown RBP10.86□□□□□ -0.67
LIME1-202ENST00000444951 MIEN1Q9BRT3 115 aa10.85□□□□□ -0.67
LIME1-202ENST00000444951 DLEU1O43261 78 aa10.84□□□□□ -0.67
LIME1-202ENST00000444951 PLAC8Q9NZF1 115 aa10.84□□□□□ -0.67
LIME1-202ENST00000444951 KRTAP7-1Q8IUC3 87 aa10.83□□□□□ -0.68
LIME1-202ENST00000444951 C12orf57Q99622 126 aa10.83□□□□□ -0.68
LIME1-202ENST00000444951 PRO1933Q9H354 126 aa10.83□□□□□ -0.68
LIME1-202ENST00000444951 M0QXV9 152 aa10.82□□□□□ -0.68
LIME1-202ENST00000444951 EIF4EBP3O60516 100 aaPredicted RBP10.82□□□□□ -0.68
LIME1-202ENST00000444951 SRSF9Q13242 221 aaKnown RBP eCLIP10.82□□□□□ -0.68
LIME1-202ENST00000444951 SOSTDC1Q6X4U4 206 aa10.82□□□□□ -0.68
LIME1-202ENST00000444951 Q8NDZ9 215 aa10.82□□□□□ -0.68
LIME1-202ENST00000444951 LINC00308Q8TCZ7 52 aa10.82□□□□□ -0.68
LIME1-202ENST00000444951 PHF5AQ7RTV0 110 aaKnown RBP10.81□□□□□ -0.68
LIME1-202ENST00000444951 NKAPP1Q8N9T2 125 aa10.81□□□□□ -0.68
LIME1-202ENST00000444951 SPANXDQ9BXN6 97 aa10.81□□□□□ -0.68
LIME1-202ENST00000444951 SPANXCQ9NY87 97 aa10.81□□□□□ -0.68
LIME1-202ENST00000444951 PRR3P79522 188 aaKnown RBP10.8□□□□□ -0.68
LIME1-202ENST00000444951 RPL24P83731 157 aaKnown RBP10.8□□□□□ -0.68
LIME1-202ENST00000444951 C22orf24Q9Y442 160 aa10.8□□□□□ -0.68
LIME1-202ENST00000444951 HMCN2Q8NDA2 5059 aa10.8□□□□□ -0.68
LIME1-202ENST00000444951 GAGE10A6NGK3 116 aa10.79□□□□□ -0.68
LIME1-202ENST00000444951 NCR3O14931 201 aa10.79□□□□□ -0.68
LIME1-202ENST00000444951 VPREB1P12018 145 aa10.79□□□□□ -0.68
LIME1-202ENST00000444951 MUSTN1Q8IVN3 82 aa10.79□□□□□ -0.68
LIME1-202ENST00000444951 LINC00528Q8N1L1 170 aa10.79□□□□□ -0.68
LIME1-202ENST00000444951 HIST1H4GQ99525 98 aa10.79□□□□□ -0.68
LIME1-202ENST00000444951 PLA2G2DQ9UNK4 145 aa10.79□□□□□ -0.68
LIME1-202ENST00000444951 C2orf91Q6ZV80 131 aa10.78□□□□□ -0.68
LIME1-202ENST00000444951 SPANXB1Q9NS25 103 aaPredicted RBP10.78□□□□□ -0.68
LIME1-202ENST00000444951 UQCR10Q9UDW1 63 aa10.78□□□□□ -0.68
LIME1-202ENST00000444951 LOC107984156A0A0G2JMH3 177 aa10.76□□□□□ -0.69
LIME1-202ENST00000444951 IFITM1P13164 125 aa10.76□□□□□ -0.69
LIME1-202ENST00000444951 UBE2BP63146 152 aa10.76□□□□□ -0.69
LIME1-202ENST00000444951 Q6ZVH6 145 aa10.76□□□□□ -0.69
LIME1-202ENST00000444951 ARL17AQ8IVW1 177 aa10.76□□□□□ -0.69
LIME1-202ENST00000444951 HIGD1BQ9P298 99 aa10.76□□□□□ -0.69
LIME1-202ENST00000444951 J3QL48 77 aa10.75□□□□□ -0.69
LIME1-202ENST00000444951 MRPL55Q7Z7F7 128 aaKnown RBP10.75□□□□□ -0.69
LIME1-202ENST00000444951 LINC00518Q8N0U6 118 aa10.75□□□□□ -0.69
LIME1-202ENST00000444951 C7orf33Q8WU49 177 aa10.75□□□□□ -0.69
LIME1-202ENST00000444951 COPS9Q8WXC6 57 aa10.75□□□□□ -0.69
LIME1-202ENST00000444951 IGLV5-37A0A075B6J1 123 aa10.74□□□□□ -0.69
LIME1-202ENST00000444951 RPL37AP8A6NKH3 93 aa10.74□□□□□ -0.69
LIME1-202ENST00000444951 PLA2G1BP04054 148 aaKnown RBP10.74□□□□□ -0.69
LIME1-202ENST00000444951 KRTAP10-4P60372 401 aaPredicted RBP10.74□□□□□ -0.69
LIME1-202ENST00000444951 LBHQ53QV2 105 aaPredicted RBP10.74□□□□□ -0.69
LIME1-202ENST00000444951 LINC00167Q96N53 147 aa10.74□□□□□ -0.69
LIME1-202ENST00000444951 M0R378 163 aa10.72□□□□□ -0.69
LIME1-202ENST00000444951 HNRNPA3P51991 378 aaKnown RBP10.72□□□□□ -0.69
LIME1-202ENST00000444951 IGKV2-28A0A075B6P5 120 aa10.71□□□□□ -0.69
LIME1-202ENST00000444951 KRTAP29-1A8MX34 341 aaPredicted RBP10.71□□□□□ -0.69
LIME1-202ENST00000444951 NDUFC2O95298 119 aa10.71□□□□□ -0.69
LIME1-202ENST00000444951 IGKV2D-28P01615 120 aa10.71□□□□□ -0.69
LIME1-202ENST00000444951 KRTAP11-1Q8IUC1 163 aa10.71□□□□□ -0.69
LIME1-202ENST00000444951 TSTD3H0UI37 97 aa10.7□□□□□ -0.7
LIME1-202ENST00000444951 S100A7L2Q5SY68 101 aa10.69□□□□□ -0.7
LIME1-202ENST00000444951 OR13C6PQ8NH95 151 aa10.69□□□□□ -0.7
LIME1-202ENST00000444951 A4D1N5 150 aa10.68□□□□□ -0.7
LIME1-202ENST00000444951 TRBV10-3A0A0K0K1G6 114 aa10.67□□□□□ -0.7
LIME1-202ENST00000444951 TRBV10-2A0A0K0K1G8 114 aa10.67□□□□□ -0.7
LIME1-202ENST00000444951 RPL37AP61513 92 aaKnown RBP10.67□□□□□ -0.7
LIME1-202ENST00000444951 IGLV1-50A0A075B6I6 118 aa10.66□□□□□ -0.7
LIME1-202ENST00000444951 DDTP30046 118 aa10.66□□□□□ -0.7
LIME1-202ENST00000444951 HSD52Q0P140 79 aa10.66□□□□□ -0.7
LIME1-202ENST00000444951 TAL2Q16559 108 aa10.66□□□□□ -0.7
LIME1-202ENST00000444951 CEND1Q8N111 149 aa10.66□□□□□ -0.7
LIME1-202ENST00000444951 PPDPFQ9H3Y8 114 aa10.66□□□□□ -0.7
LIME1-202ENST00000444951 PSORS1C2Q9UIG4 136 aa10.66□□□□□ -0.7
LIME1-202ENST00000444951 UBR4Q5T4S7 5183 aa10.66□□□□□ -0.7
LIME1-202ENST00000444951 A6NDN8 102 aa10.65□□□□□ -0.7
LIME1-202ENST00000444951 LINC00337Q8N6G1 96 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms