RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 LINC00474Q9P2X8 69 aa5.63□□□□□ -1.51
USP54-203ENST00000418501 GAGE2EQ4V326 116 aa5.63□□□□□ -1.51
USP54-203ENST00000418501 Q8N3U1 123 aa5.63□□□□□ -1.51
USP54-203ENST00000418501 GAGE2DQ9UEU5 116 aa5.63□□□□□ -1.51
USP54-203ENST00000418501 NCR3O14931 201 aa5.62□□□□□ -1.51
USP54-203ENST00000418501 SOSTDC1Q6X4U4 206 aa5.62□□□□□ -1.51
USP54-203ENST00000418501 C6orf48Q9UBA6 75 aa5.62□□□□□ -1.51
USP54-203ENST00000418501 BAALC-AS2P0C853 105 aa5.61□□□□□ -1.51
USP54-203ENST00000418501 SMIM11BQ8TCY0 68 aa5.61□□□□□ -1.51
USP54-203ENST00000418501 Q6ZRU5 148 aa5.61□□□□□ -1.51
USP54-203ENST00000418501 TRBV7-6A0A0J9YX20 115 aa5.61□□□□□ -1.51
USP54-203ENST00000418501 TLX1NBP0CAT3 122 aa5.61□□□□□ -1.51
USP54-203ENST00000418501 C6orf223Q8N319 242 aa5.61□□□□□ -1.51
USP54-203ENST00000418501 NBDYA0A0U1RRE5 68 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 ACYP1P07311 99 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 COX7BP24311 80 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 TRAV23DV6A0A075B6W5 121 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 B5MCH6 92 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 TMEM256-PLSCR3K7ERE1 68 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 DPH3Q96FX2 82 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 JMJD7-PLA2G4BH0Y9G9 81 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 GAGE2BQ13066 116 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 CLEC2BQ92478 149 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 ANAPC13Q9BS18 74 aa5.6□□□□□ -1.51
USP54-203ENST00000418501 NF1P21359 2839 aa5.59□□□□□ -1.51
USP54-203ENST00000418501 LINC00337Q8N6G1 96 aa5.59□□□□□ -1.51
USP54-203ENST00000418501 C15orf56Q8N910 161 aa5.59□□□□□ -1.51
USP54-203ENST00000418501 WWC2-AS2Q96NR7 200 aa5.59□□□□□ -1.51
USP54-203ENST00000418501 C9orf116Q5BN46 136 aaPredicted RBP5.59□□□□□ -1.52
USP54-203ENST00000418501 CELSR1Q9NYQ6 3014 aa5.59□□□□□ -1.52
USP54-203ENST00000418501 LINC00526Q96FQ7 95 aa5.58□□□□□ -1.52
USP54-203ENST00000418501 PLA2G2DQ9UNK4 145 aa5.58□□□□□ -1.52
USP54-203ENST00000418501 XAGE1AQ9HD64 81 aa5.58□□□□□ -1.52
USP54-203ENST00000418501 COL6A5A8TX70 2615 aa5.58□□□□□ -1.52
USP54-203ENST00000418501 ETDCA0A1B0GVM5 59 aa5.58□□□□□ -1.52
USP54-203ENST00000418501 hADV29S1A0JD25 119 aa5.58□□□□□ -1.52
USP54-203ENST00000418501 LECT2O14960 151 aa5.58□□□□□ -1.52
USP54-203ENST00000418501 PDE6GP18545 87 aa5.58□□□□□ -1.52
USP54-203ENST00000418501 C10orf25Q5T742 122 aa5.58□□□□□ -1.52
USP54-203ENST00000418501 CCDC179H3BU77 68 aa5.57□□□□□ -1.52
USP54-203ENST00000418501 IGKV2-28A0A075B6P5 120 aa5.57□□□□□ -1.52
USP54-203ENST00000418501 ZNF73O43830 326 aaPredicted RBP5.57□□□□□ -1.52
USP54-203ENST00000418501 IGKV2D-28P01615 120 aa5.57□□□□□ -1.52
USP54-203ENST00000418501 C3orf84H3BNL1 204 aa5.56□□□□□ -1.52
USP54-203ENST00000418501 PRYO14603 147 aa5.56□□□□□ -1.52
USP54-203ENST00000418501 C6orf99Q4VX62 202 aa5.56□□□□□ -1.52
USP54-203ENST00000418501 KRTAP26-1Q6PEX3 210 aa5.56□□□□□ -1.52
USP54-203ENST00000418501 DHRS4-AS1Q9P1J3 65 aa5.56□□□□□ -1.52
USP54-203ENST00000418501 CSMD3Q7Z407 3707 aa5.56□□□□□ -1.52
USP54-203ENST00000418501 NDUFV3P56181 108 aaKnown RBP5.56□□□□□ -1.52
USP54-203ENST00000418501 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.56□□□□□ -1.52
USP54-203ENST00000418501 SMIM20Q8N5G0 67 aa5.56□□□□□ -1.52
USP54-203ENST00000418501 LAMTOR3Q9UHA4 124 aa5.55□□□□□ -1.52
USP54-203ENST00000418501 STAB1Q9NY15 2570 aa5.55□□□□□ -1.52
USP54-203ENST00000418501 Q6Q795 121 aa5.55□□□□□ -1.52
USP54-203ENST00000418501 LINC01600Q96MT4 127 aa5.55□□□□□ -1.52
USP54-203ENST00000418501 CNBPP62633 177 aaKnown RBP5.55□□□□□ -1.52
USP54-203ENST00000418501 IGLV6-57P01721 117 aa5.55□□□□□ -1.52
USP54-203ENST00000418501 TRBV10-3A0A0K0K1G6 114 aa5.54□□□□□ -1.52
USP54-203ENST00000418501 C1orf134Q5TEV5 83 aa5.54□□□□□ -1.52
USP54-203ENST00000418501 UBE2BP63146 152 aa5.54□□□□□ -1.52
USP54-203ENST00000418501 Q8N814 137 aa5.54□□□□□ -1.52
USP54-203ENST00000418501 VPREB1P12018 145 aa5.53□□□□□ -1.52
USP54-203ENST00000418501 C16orf90A8MZG2 172 aa5.53□□□□□ -1.52
USP54-203ENST00000418501 CSMD2Q7Z408 3487 aa5.53□□□□□ -1.52
USP54-203ENST00000418501 IGLV5-37A0A075B6J1 123 aa5.53□□□□□ -1.52
USP54-203ENST00000418501 LINC00575Q6W349 94 aa5.53□□□□□ -1.52
USP54-203ENST00000418501 NIPBLQ6KC79 2804 aaeCLIP5.52□□□□□ -1.53
USP54-203ENST00000418501 F8WEM9 126 aa5.52□□□□□ -1.53
USP54-203ENST00000418501 DSCR8Q96T75 97 aa5.52□□□□□ -1.53
USP54-203ENST00000418501 EIF4EBP3O60516 100 aaPredicted RBP5.52□□□□□ -1.53
USP54-203ENST00000418501 LY6G6CO95867 125 aa5.52□□□□□ -1.53
USP54-203ENST00000418501 FAM240AA0A1B0GVK7 77 aa5.52□□□□□ -1.53
USP54-203ENST00000418501 MRPL55Q7Z7F7 128 aaKnown RBP5.51□□□□□ -1.53
USP54-203ENST00000418501 Q6ZRP5 223 aa5.51□□□□□ -1.53
USP54-203ENST00000418501 PRR3P79522 188 aaKnown RBP5.5□□□□□ -1.53
USP54-203ENST00000418501 FAM19A5Q7Z5A7 132 aaPredicted RBP5.5□□□□□ -1.53
USP54-203ENST00000418501 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.5□□□□□ -1.53
USP54-203ENST00000418501 RBM3P98179 157 aaKnown RBP5.5□□□□□ -1.53
USP54-203ENST00000418501 MGAM2Q2M2H8 2515 aa5.5□□□□□ -1.53
USP54-203ENST00000418501 IGKV2-24A0A0C4DH68 120 aa5.49□□□□□ -1.53
USP54-203ENST00000418501 ELOF1P60002 83 aaKnown RBP5.49□□□□□ -1.53
USP54-203ENST00000418501 GAGE2AQ6NT46 116 aa5.49□□□□□ -1.53
USP54-203ENST00000418501 KCNQ1DNQ9H478 68 aa5.49□□□□□ -1.53
USP54-203ENST00000418501 A0A087WYN8 130 aa5.49□□□□□ -1.53
USP54-203ENST00000418501 M0R2N4 97 aa5.49□□□□□ -1.53
USP54-203ENST00000418501 C7orf33Q8WU49 177 aa5.49□□□□□ -1.53
USP54-203ENST00000418501 C22orf24Q9Y442 160 aa5.49□□□□□ -1.53
USP54-203ENST00000418501 SVEP1Q4LDE5 3571 aa5.49□□□□□ -1.53
USP54-203ENST00000418501 REG3GQ6UW15 175 aa5.48□□□□□ -1.53
USP54-203ENST00000418501 C9orf163Q8N9P6 203 aa5.48□□□□□ -1.53
USP54-203ENST00000418501 ANK2Q01484 3957 aa5.48□□□□□ -1.53
USP54-203ENST00000418501 LINC00167Q96N53 147 aa5.47□□□□□ -1.53
USP54-203ENST00000418501 TEX49A0A1B0GTD5 131 aa5.47□□□□□ -1.53
USP54-203ENST00000418501 UBL5Q9BZL1 73 aa5.47□□□□□ -1.53
USP54-203ENST00000418501 UBE2AP49459 152 aa5.47□□□□□ -1.53
USP54-203ENST00000418501 Q6ZQY7 126 aa5.47□□□□□ -1.53
USP54-203ENST00000418501 C9orf129Q5T035 196 aaKnown RBP5.46□□□□□ -1.54
USP54-203ENST00000418501 TENM1Q9UKZ4 2725 aa5.46□□□□□ -1.54
USP54-203ENST00000418501 IGLV5-52A0A0A0MRZ9 124 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms