RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SFTA2Q6UW10 78 aa7.99□□□□□ -1.13
LINC00339-202ENST00000416769 C2orf82Q6UX34 121 aa7.99□□□□□ -1.13
LINC00339-202ENST00000416769 SVIPQ8NHG7 77 aa7.99□□□□□ -1.13
LINC00339-202ENST00000416769 CARD19Q96LW7 228 aa7.99□□□□□ -1.13
LINC00339-202ENST00000416769 LOC105371267A0A1B0GV96 52 aa7.98□□□□□ -1.13
LINC00339-202ENST00000416769 HSBP1L1C9JCN9 74 aa7.98□□□□□ -1.13
LINC00339-202ENST00000416769 EIF4EBP3O60516 100 aaPredicted RBP7.98□□□□□ -1.13
LINC00339-202ENST00000416769 NMUP48645 174 aa7.98□□□□□ -1.13
LINC00339-202ENST00000416769 ANKRD39Q53RE8 183 aa7.98□□□□□ -1.13
LINC00339-202ENST00000416769 C10orf25Q5T742 122 aa7.98□□□□□ -1.13
LINC00339-202ENST00000416769 LGALS3P17931 250 aaKnown RBP7.97□□□□□ -1.13
LINC00339-202ENST00000416769 ZNF625Q96I27 306 aaPredicted RBP7.97□□□□□ -1.13
LINC00339-202ENST00000416769 C6orf48Q9UBA6 75 aa7.97□□□□□ -1.13
LINC00339-202ENST00000416769 IGKV2D-26A0A0A0MRZ7 120 aa7.96□□□□□ -1.14
LINC00339-202ENST00000416769 MYMXA0A1B0GTQ4 84 aa7.96□□□□□ -1.14
LINC00339-202ENST00000416769 TSPEAR-AS2P59090 65 aa7.96□□□□□ -1.14
LINC00339-202ENST00000416769 SRSF9Q13242 221 aaKnown RBP eCLIP7.96□□□□□ -1.14
LINC00339-202ENST00000416769 NDUFA12Q9UI09 145 aa7.96□□□□□ -1.14
LINC00339-202ENST00000416769 HERV-K104P63124 156 aa7.95□□□□□ -1.14
LINC00339-202ENST00000416769 PKIGQ9Y2B9 76 aa7.95□□□□□ -1.14
LINC00339-202ENST00000416769 LINC00587B1AMM8 73 aa7.94□□□□□ -1.14
LINC00339-202ENST00000416769 TLX1NBP0CAT3 122 aa7.94□□□□□ -1.14
LINC00339-202ENST00000416769 SPINK6Q6UWN8 80 aa7.94□□□□□ -1.14
LINC00339-202ENST00000416769 LOC107984640A0A0U1RRK4 108 aa7.93□□□□□ -1.14
LINC00339-202ENST00000416769 COX17Q14061 63 aa7.93□□□□□ -1.14
LINC00339-202ENST00000416769 C9orf116Q5BN46 136 aaPredicted RBP7.93□□□□□ -1.14
LINC00339-202ENST00000416769 VAMP8Q9BV40 100 aa7.93□□□□□ -1.14
LINC00339-202ENST00000416769 A0A1W2PNN7 141 aa7.91□□□□□ -1.14
LINC00339-202ENST00000416769 ZNF815PA8K554 130 aa7.91□□□□□ -1.14
LINC00339-202ENST00000416769 NDUFC2-KCTD14E9PQ53 114 aa7.91□□□□□ -1.14
LINC00339-202ENST00000416769 SPATA45Q537H7 98 aa7.91□□□□□ -1.14
LINC00339-202ENST00000416769 REG3GQ6UW15 175 aa7.91□□□□□ -1.14
LINC00339-202ENST00000416769 ERG28Q9UKR5 140 aa7.91□□□□□ -1.14
LINC00339-202ENST00000416769 PAM16Q9Y3D7 125 aa7.91□□□□□ -1.14
LINC00339-202ENST00000416769 A0A0J9YXY3 114 aa7.9□□□□□ -1.14
LINC00339-202ENST00000416769 S100A12P80511 92 aa7.9□□□□□ -1.14
LINC00339-202ENST00000416769 PCP2Q8IVA1 136 aa7.9□□□□□ -1.14
LINC00339-202ENST00000416769 TTTY13Q9BZ97 58 aa7.9□□□□□ -1.14
LINC00339-202ENST00000416769 SMIM6P0DI80 62 aa7.89□□□□□ -1.15
LINC00339-202ENST00000416769 COX8AP10176 69 aa7.89□□□□□ -1.15
LINC00339-202ENST00000416769 PFN2P35080 140 aa7.89□□□□□ -1.15
LINC00339-202ENST00000416769 MEIG1Q5JSS6 88 aa7.89□□□□□ -1.15
LINC00339-202ENST00000416769 Q6ZRP5 223 aa7.89□□□□□ -1.15
LINC00339-202ENST00000416769 DLEU1O43261 78 aa7.88□□□□□ -1.15
LINC00339-202ENST00000416769 SMIM13P0DJ93 91 aa7.88□□□□□ -1.15
LINC00339-202ENST00000416769 PTTG1IPP53801 180 aa7.88□□□□□ -1.15
LINC00339-202ENST00000416769 LINC00158P58513 81 aa7.88□□□□□ -1.15
LINC00339-202ENST00000416769 RPL18AQ02543 176 aaKnown RBP7.88□□□□□ -1.15
LINC00339-202ENST00000416769 GAGE2BQ13066 116 aa7.88□□□□□ -1.15
LINC00339-202ENST00000416769 BOD1L2Q8IYS8 172 aa7.88□□□□□ -1.15
LINC00339-202ENST00000416769 LINC00474Q9P2X8 69 aa7.88□□□□□ -1.15
LINC00339-202ENST00000416769 TIMM17BO60830 172 aa7.87□□□□□ -1.15
LINC00339-202ENST00000416769 GAGE2EQ4V326 116 aa7.87□□□□□ -1.15
LINC00339-202ENST00000416769 GAGE2DQ9UEU5 116 aa7.87□□□□□ -1.15
LINC00339-202ENST00000416769 SCGB1D4Q6XE38 83 aa7.86□□□□□ -1.15
LINC00339-202ENST00000416769 KRTAP11-1Q8IUC1 163 aa7.86□□□□□ -1.15
LINC00339-202ENST00000416769 PRR26Q8N8Z3 221 aa7.86□□□□□ -1.15
LINC00339-202ENST00000416769 C14orf144Q96I85 54 aa7.86□□□□□ -1.15
LINC00339-202ENST00000416769 PSORS1C2Q9UIG4 136 aa7.86□□□□□ -1.15
LINC00339-202ENST00000416769 MUC2Q02817 5179 aa7.86□□□□□ -1.15
LINC00339-202ENST00000416769 A0A0U1RRA0 63 aa7.85□□□□□ -1.15
LINC00339-202ENST00000416769 PHF5AQ7RTV0 110 aaKnown RBP7.85□□□□□ -1.15
LINC00339-202ENST00000416769 SLC25A34Q6PIV7 304 aa7.84□□□□□ -1.15
LINC00339-202ENST00000416769 MIR7-3HGQ8N6C7 128 aa7.84□□□□□ -1.15
LINC00339-202ENST00000416769 LITAFQ99732 161 aa7.84□□□□□ -1.15
LINC00339-202ENST00000416769 SND1-IT1Q9HBX3 110 aa7.84□□□□□ -1.15
LINC00339-202ENST00000416769 LOC107984156A0A0G2JMH3 177 aa7.83□□□□□ -1.16
LINC00339-202ENST00000416769 TMEM238C9JI98 176 aa7.83□□□□□ -1.16
LINC00339-202ENST00000416769 C9orf129Q5T035 196 aaKnown RBP7.83□□□□□ -1.16
LINC00339-202ENST00000416769 ADAMTSL4-AS1Q5T5F5 129 aa7.83□□□□□ -1.16
LINC00339-202ENST00000416769 ARL17AQ8IVW1 177 aa7.83□□□□□ -1.16
LINC00339-202ENST00000416769 C1orf137Q5JT78 98 aa7.82□□□□□ -1.16
LINC00339-202ENST00000416769 Q6ZVH6 145 aa7.82□□□□□ -1.16
LINC00339-202ENST00000416769 XAGE1AQ9HD64 81 aa7.82□□□□□ -1.16
LINC00339-202ENST00000416769 FAM168BA1KXE4 195 aa7.81□□□□□ -1.16
LINC00339-202ENST00000416769 DAND5Q8N907 189 aa7.81□□□□□ -1.16
LINC00339-202ENST00000416769 C12orf57Q99622 126 aa7.81□□□□□ -1.16
LINC00339-202ENST00000416769 SPANXDQ9BXN6 97 aa7.81□□□□□ -1.16
LINC00339-202ENST00000416769 SPANXB1Q9NS25 103 aaPredicted RBP7.81□□□□□ -1.16
LINC00339-202ENST00000416769 SPANXCQ9NY87 97 aa7.81□□□□□ -1.16
LINC00339-202ENST00000416769 HIGD1BQ9P298 99 aa7.81□□□□□ -1.16
LINC00339-202ENST00000416769 LINC00518Q8N0U6 118 aa7.8□□□□□ -1.16
LINC00339-202ENST00000416769 UQCR10Q9UDW1 63 aa7.8□□□□□ -1.16
LINC00339-202ENST00000416769 IFITM1P13164 125 aa7.79□□□□□ -1.16
LINC00339-202ENST00000416769 LINC00308Q8TCZ7 52 aa7.79□□□□□ -1.16
LINC00339-202ENST00000416769 COPS9Q8WXC6 57 aa7.79□□□□□ -1.16
LINC00339-202ENST00000416769 PPDPFQ9H3Y8 114 aa7.79□□□□□ -1.16
LINC00339-202ENST00000416769 RPL24P83731 157 aaKnown RBP7.78□□□□□ -1.16
LINC00339-202ENST00000416769 MIEN1Q9BRT3 115 aa7.78□□□□□ -1.16
LINC00339-202ENST00000416769 TP73-AS1Q9UF72 201 aa7.78□□□□□ -1.16
LINC00339-202ENST00000416769 IGLV5-37A0A075B6J1 123 aa7.77□□□□□ -1.17
LINC00339-202ENST00000416769 IGLV7-43P04211 117 aa7.77□□□□□ -1.17
LINC00339-202ENST00000416769 SOSTDC1Q6X4U4 206 aa7.77□□□□□ -1.17
LINC00339-202ENST00000416769 C2orf91Q6ZV80 131 aa7.77□□□□□ -1.17
LINC00339-202ENST00000416769 KRTAP7-1Q8IUC3 87 aa7.77□□□□□ -1.17
LINC00339-202ENST00000416769 MUSTN1Q8IVN3 82 aa7.77□□□□□ -1.17
LINC00339-202ENST00000416769 KRTAP9-2Q9BYQ4 174 aa7.77□□□□□ -1.17
LINC00339-202ENST00000416769 NDUFC2O95298 119 aa7.76□□□□□ -1.17
LINC00339-202ENST00000416769 KRTAP1-4P0C5Y4 121 aa7.76□□□□□ -1.17
LINC00339-202ENST00000416769 NPC2P61916 151 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 215.4 ms