RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 LINC01600Q96MT4 127 aa12.52□□□□□ -0.41
USP39-202ENST00000409025 TMEM126AQ9H061 195 aa12.52□□□□□ -0.41
USP39-202ENST00000409025 NUPR2A6NF83 97 aa12.51□□□□□ -0.41
USP39-202ENST00000409025 NCR3O14931 201 aa12.51□□□□□ -0.41
USP39-202ENST00000409025 SYCNQ0VAF6 134 aa12.51□□□□□ -0.41
USP39-202ENST00000409025 Q8NDZ9 215 aa12.51□□□□□ -0.41
USP39-202ENST00000409025 H0YGX0 51 aa12.5□□□□□ -0.41
USP39-202ENST00000409025 COL7A1Q02388 2944 aa12.5□□□□□ -0.41
USP39-202ENST00000409025 H3BT86 120 aa12.5□□□□□ -0.41
USP39-202ENST00000409025 TRACP01848 142 aa12.5□□□□□ -0.41
USP39-202ENST00000409025 USP17L23D6RBM5 183 aa12.49□□□□□ -0.41
USP39-202ENST00000409025 XAGE1AQ9HD64 81 aa12.49□□□□□ -0.41
USP39-202ENST00000409025 NDUFC2-KCTD14E9PQ53 114 aa12.49□□□□□ -0.41
USP39-202ENST00000409025 S100A7L2Q5SY68 101 aa12.49□□□□□ -0.41
USP39-202ENST00000409025 PPDPFLQ8WWR9 84 aa12.49□□□□□ -0.41
USP39-202ENST00000409025 CARD19Q96LW7 228 aa12.49□□□□□ -0.41
USP39-202ENST00000409025 FAM218AQ96MZ4 157 aa12.49□□□□□ -0.41
USP39-202ENST00000409025 CASC10Q5T4H9 136 aa12.48□□□□□ -0.41
USP39-202ENST00000409025 STAB2Q8WWQ8 2551 aa12.48□□□□□ -0.41
USP39-202ENST00000409025 VPS25Q9BRG1 176 aa12.46□□□□□ -0.42
USP39-202ENST00000409025 RPL18AQ02543 176 aaKnown RBP12.45□□□□□ -0.42
USP39-202ENST00000409025 GAGE2EQ4V326 116 aa12.43□□□□□ -0.42
USP39-202ENST00000409025 KRTAP1-5Q9BYS1 174 aa12.43□□□□□ -0.42
USP39-202ENST00000409025 GAGE2DQ9UEU5 116 aa12.43□□□□□ -0.42
USP39-202ENST00000409025 A0A087WYN8 130 aa12.42□□□□□ -0.42
USP39-202ENST00000409025 Q6ZRP5 223 aa12.42□□□□□ -0.42
USP39-202ENST00000409025 IGLV6-57P01721 117 aa12.41□□□□□ -0.42
USP39-202ENST00000409025 DNAL4O96015 105 aa12.41□□□□□ -0.42
USP39-202ENST00000409025 LECT2O14960 151 aa12.4□□□□□ -0.42
USP39-202ENST00000409025 SLPIP03973 132 aa12.4□□□□□ -0.42
USP39-202ENST00000409025 VPREB1P12018 145 aa12.4□□□□□ -0.42
USP39-202ENST00000409025 BAALC-AS2P0C853 105 aa12.39□□□□□ -0.43
USP39-202ENST00000409025 TLX1NBP0CAT3 122 aa12.39□□□□□ -0.43
USP39-202ENST00000409025 DYNC2H1Q8NCM8 4307 aaKnown RBP12.39□□□□□ -0.43
USP39-202ENST00000409025 C6orf99Q4VX62 202 aa12.38□□□□□ -0.43
USP39-202ENST00000409025 TEX49A0A1B0GTD5 131 aa12.37□□□□□ -0.43
USP39-202ENST00000409025 PSCAO43653 123 aa12.37□□□□□ -0.43
USP39-202ENST00000409025 DNAH1Q9P2D7 4330 aa12.37□□□□□ -0.43
USP39-202ENST00000409025 TRBV10-3A0A0K0K1G6 114 aa12.37□□□□□ -0.43
USP39-202ENST00000409025 M0R378 163 aa12.37□□□□□ -0.43
USP39-202ENST00000409025 A0A1B0GX51 115 aa12.36□□□□□ -0.43
USP39-202ENST00000409025 TTC32Q5I0X7 151 aa12.36□□□□□ -0.43
USP39-202ENST00000409025 C9orf129Q5T035 196 aaKnown RBP12.35□□□□□ -0.43
USP39-202ENST00000409025 CBY1Q9Y3M2 126 aa12.35□□□□□ -0.43
USP39-202ENST00000409025 TRAV23DV6A0A075B6W5 121 aa12.34□□□□□ -0.43
USP39-202ENST00000409025 NBDYA0A0U1RRE5 68 aa12.33□□□□□ -0.44
USP39-202ENST00000409025 SNCGO76070 127 aa12.33□□□□□ -0.44
USP39-202ENST00000409025 Q8N814 137 aa12.31□□□□□ -0.44
USP39-202ENST00000409025 LOC107984640A0A0U1RRK4 108 aa12.3□□□□□ -0.44
USP39-202ENST00000409025 NKAPP1Q8N9T2 125 aa12.3□□□□□ -0.44
USP39-202ENST00000409025 DIRC1Q969H9 104 aa12.3□□□□□ -0.44
USP39-202ENST00000409025 PLA2G2DQ9UNK4 145 aa12.3□□□□□ -0.44
USP39-202ENST00000409025 PRKDCP78527 4128 aaKnown RBP12.3□□□□□ -0.44
USP39-202ENST00000409025 LINC00167Q96N53 147 aa12.29□□□□□ -0.44
USP39-202ENST00000409025 ORMDL1Q9P0S3 153 aa12.29□□□□□ -0.44
USP39-202ENST00000409025 ZNF73O43830 326 aaPredicted RBP12.29□□□□□ -0.44
USP39-202ENST00000409025 C14orf177Q52M58 125 aa12.29□□□□□ -0.44
USP39-202ENST00000409025 LINC00575Q6W349 94 aa12.29□□□□□ -0.44
USP39-202ENST00000409025 C22orf24Q9Y442 160 aa12.29□□□□□ -0.44
USP39-202ENST00000409025 GAGE2BQ13066 116 aa12.28□□□□□ -0.44
USP39-202ENST00000409025 MEGF8Q7Z7M0 2845 aa12.27□□□□□ -0.44
USP39-202ENST00000409025 SERTAD4-AS1Q5TG53 156 aa12.27□□□□□ -0.44
USP39-202ENST00000409025 CSMD3Q7Z407 3707 aa12.26□□□□□ -0.45
USP39-202ENST00000409025 CNBPP62633 177 aaKnown RBP12.26□□□□□ -0.45
USP39-202ENST00000409025 hADV29S1A0JD25 119 aa12.25□□□□□ -0.45
USP39-202ENST00000409025 TRBV7-6A0A0J9YX20 115 aa12.25□□□□□ -0.45
USP39-202ENST00000409025 LYSTQ99698 3801 aa12.24□□□□□ -0.45
USP39-202ENST00000409025 COX7BP24311 80 aa12.24□□□□□ -0.45
USP39-202ENST00000409025 IGLV5-37A0A075B6J1 123 aa12.23□□□□□ -0.45
USP39-202ENST00000409025 DNAH7Q8WXX0 4024 aa12.23□□□□□ -0.45
USP39-202ENST00000409025 C7orf33Q8WU49 177 aa12.23□□□□□ -0.45
USP39-202ENST00000409025 INAFM2P0DMQ5 153 aa12.22□□□□□ -0.45
USP39-202ENST00000409025 PLECQ15149 4684 aaKnown RBP12.22□□□□□ -0.45
USP39-202ENST00000409025 CDIP1Q9H305 208 aa12.22□□□□□ -0.45
USP39-202ENST00000409025 FAM168BA1KXE4 195 aa12.21□□□□□ -0.45
USP39-202ENST00000409025 ELOF1P60002 83 aaKnown RBP12.21□□□□□ -0.45
USP39-202ENST00000409025 TMEM256-PLSCR3K7ERE1 68 aa12.21□□□□□ -0.46
USP39-202ENST00000409025 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.2□□□□□ -0.46
USP39-202ENST00000409025 LRCOL1A6NCL2 159 aa12.19□□□□□ -0.46
USP39-202ENST00000409025 M0R2N4 97 aa12.19□□□□□ -0.46
USP39-202ENST00000409025 Q6ZRN7 208 aaPredicted RBP12.19□□□□□ -0.46
USP39-202ENST00000409025 SIGMAR1Q99720 223 aa12.19□□□□□ -0.46
USP39-202ENST00000409025 KCNQ1DNQ9H478 68 aa12.19□□□□□ -0.46
USP39-202ENST00000409025 FAM19A5Q7Z5A7 132 aaPredicted RBP12.17□□□□□ -0.46
USP39-202ENST00000409025 OBSCN-AS1Q96MR7 158 aa12.17□□□□□ -0.46
USP39-202ENST00000409025 STARD9Q9P2P6 4700 aa12.17□□□□□ -0.46
USP39-202ENST00000409025 FAM240AA0A1B0GVK7 77 aa12.17□□□□□ -0.46
USP39-202ENST00000409025 C16orf90A8MZG2 172 aa12.17□□□□□ -0.46
USP39-202ENST00000409025 KRTAP7-1Q8IUC3 87 aa12.16□□□□□ -0.46
USP39-202ENST00000409025 A0A096LNI7 61 aa12.15□□□□□ -0.46
USP39-202ENST00000409025 Q6ZQY7 126 aa12.15□□□□□ -0.46
USP39-202ENST00000409025 MRPL55Q7Z7F7 128 aaKnown RBP12.15□□□□□ -0.46
USP39-202ENST00000409025 LINC00528Q8N1L1 170 aa12.15□□□□□ -0.46
USP39-202ENST00000409025 IGLV1-50A0A075B6I6 118 aa12.14□□□□□ -0.47
USP39-202ENST00000409025 RPL37AP8A6NKH3 93 aa12.14□□□□□ -0.47
USP39-202ENST00000409025 H3BQ85 93 aa12.14□□□□□ -0.47
USP39-202ENST00000409025 PRYO14603 147 aa12.13□□□□□ -0.47
USP39-202ENST00000409025 ACYP1P07311 99 aa12.13□□□□□ -0.47
USP39-202ENST00000409025 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.13□□□□□ -0.47
USP39-202ENST00000409025 IGKV2-24A0A0C4DH68 120 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms