RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PCP4L1A6NKN8 68 aa11.51□□□□□ -0.57
SDC1-203ENST00000403076 SOSTDC1Q6X4U4 206 aa11.51□□□□□ -0.57
SDC1-203ENST00000403076 DNAH11Q96DT5 4516 aa11.51□□□□□ -0.57
SDC1-203ENST00000403076 PANO1I0J062 215 aa11.5□□□□□ -0.57
SDC1-203ENST00000403076 TAL2Q16559 108 aa11.5□□□□□ -0.57
SDC1-203ENST00000403076 LOC107984156A0A0G2JMH3 177 aa11.5□□□□□ -0.57
SDC1-203ENST00000403076 EIF4EBP3O60516 100 aaPredicted RBP11.5□□□□□ -0.57
SDC1-203ENST00000403076 ARL17AQ8IVW1 177 aa11.5□□□□□ -0.57
SDC1-203ENST00000403076 SPACA4Q8TDM5 124 aa11.5□□□□□ -0.57
SDC1-203ENST00000403076 PPDPFQ9H3Y8 114 aa11.5□□□□□ -0.57
SDC1-203ENST00000403076 RPL24P83731 157 aaKnown RBP11.49□□□□□ -0.57
SDC1-203ENST00000403076 HSD52Q0P140 79 aa11.49□□□□□ -0.57
SDC1-203ENST00000403076 PKD1P98161 4303 aa11.48□□□□□ -0.57
SDC1-203ENST00000403076 FAM168BA1KXE4 195 aa11.48□□□□□ -0.57
SDC1-203ENST00000403076 DDTP30046 118 aa11.48□□□□□ -0.57
SDC1-203ENST00000403076 FAM19A5Q7Z5A7 132 aaPredicted RBP11.48□□□□□ -0.57
SDC1-203ENST00000403076 FAM30AQ9NZY2 134 aa11.48□□□□□ -0.57
SDC1-203ENST00000403076 HECTD4Q9Y4D8 3996 aa11.47□□□□□ -0.57
SDC1-203ENST00000403076 A0A087WYN8 130 aa11.46□□□□□ -0.57
SDC1-203ENST00000403076 A0A1W2PNN7 141 aa11.46□□□□□ -0.57
SDC1-203ENST00000403076 SERTAD4-AS1Q5TG53 156 aa11.46□□□□□ -0.57
SDC1-203ENST00000403076 CEND1Q8N111 149 aa11.46□□□□□ -0.57
SDC1-203ENST00000403076 NKAPP1Q8N9T2 125 aa11.46□□□□□ -0.57
SDC1-203ENST00000403076 PLA2G2DQ9UNK4 145 aa11.46□□□□□ -0.57
SDC1-203ENST00000403076 VPREB1P12018 145 aa11.45□□□□□ -0.58
SDC1-203ENST00000403076 A4D1N5 150 aa11.44□□□□□ -0.58
SDC1-203ENST00000403076 PRR3P79522 188 aaKnown RBP11.44□□□□□ -0.58
SDC1-203ENST00000403076 Q6ZSA8 131 aa11.44□□□□□ -0.58
SDC1-203ENST00000403076 Q8NDZ9 215 aa11.44□□□□□ -0.58
SDC1-203ENST00000403076 NCR3O14931 201 aa11.43□□□□□ -0.58
SDC1-203ENST00000403076 NDUFC2O95298 119 aa11.43□□□□□ -0.58
SDC1-203ENST00000403076 C22orf24Q9Y442 160 aa11.42□□□□□ -0.58
SDC1-203ENST00000403076 DNAH5Q8TE73 4624 aa11.42□□□□□ -0.58
SDC1-203ENST00000403076 M0QXV9 152 aa11.41□□□□□ -0.58
SDC1-203ENST00000403076 PLAC8Q9NZF1 115 aa11.41□□□□□ -0.58
SDC1-203ENST00000403076 TMEM238LA0A1B0GVL6 79 aa11.4□□□□□ -0.58
SDC1-203ENST00000403076 A6NJY4 79 aa11.4□□□□□ -0.58
SDC1-203ENST00000403076 HINT1P49773 126 aaPredicted RBP11.4□□□□□ -0.58
SDC1-203ENST00000403076 FXYD2P54710 66 aa11.4□□□□□ -0.58
SDC1-203ENST00000403076 SCXQ7RTU7 201 aa11.4□□□□□ -0.58
SDC1-203ENST00000403076 KRTAP7-1Q8IUC3 87 aa11.4□□□□□ -0.58
SDC1-203ENST00000403076 CIRBP-AS1Q8TBR5 109 aa11.4□□□□□ -0.58
SDC1-203ENST00000403076 IGLV5-37A0A075B6J1 123 aa11.4□□□□□ -0.59
SDC1-203ENST00000403076 M0R378 163 aa11.4□□□□□ -0.59
SDC1-203ENST00000403076 HAMPP81172 84 aa11.4□□□□□ -0.59
SDC1-203ENST00000403076 GAGE10A6NGK3 116 aa11.39□□□□□ -0.59
SDC1-203ENST00000403076 M0R143 59 aa11.39□□□□□ -0.59
SDC1-203ENST00000403076 MRPL55Q7Z7F7 128 aaKnown RBP11.39□□□□□ -0.59
SDC1-203ENST00000403076 OR13C6PQ8NH95 151 aa11.39□□□□□ -0.59
SDC1-203ENST00000403076 TRBV10-2A0A0K0K1G8 114 aa11.38□□□□□ -0.59
SDC1-203ENST00000403076 LBHQ53QV2 105 aaPredicted RBP11.38□□□□□ -0.59
SDC1-203ENST00000403076 PHF5AQ7RTV0 110 aaKnown RBP11.38□□□□□ -0.59
SDC1-203ENST00000403076 IGKV2-28A0A075B6P5 120 aa11.37□□□□□ -0.59
SDC1-203ENST00000403076 IGKV2D-28P01615 120 aa11.37□□□□□ -0.59
SDC1-203ENST00000403076 S100A7L2Q5SY68 101 aa11.37□□□□□ -0.59
SDC1-203ENST00000403076 BVES-AS1Q5T3Y7 98 aa11.37□□□□□ -0.59
SDC1-203ENST00000403076 C7orf33Q8WU49 177 aa11.37□□□□□ -0.59
SDC1-203ENST00000403076 A6NDN8 102 aa11.36□□□□□ -0.59
SDC1-203ENST00000403076 LINC00167Q96N53 147 aa11.36□□□□□ -0.59
SDC1-203ENST00000403076 EPPK1P58107 5090 aaKnown RBP11.36□□□□□ -0.59
SDC1-203ENST00000403076 UBE2BP63146 152 aa11.35□□□□□ -0.59
SDC1-203ENST00000403076 RAB37Q96AX2 223 aa11.35□□□□□ -0.59
SDC1-203ENST00000403076 NHP2Q9NX24 153 aaKnown RBP11.35□□□□□ -0.59
SDC1-203ENST00000403076 EPM2AB3EWF7 344 aa11.35□□□□□ -0.59
SDC1-203ENST00000403076 BATFQ16520 125 aa11.35□□□□□ -0.59
SDC1-203ENST00000403076 LINC00337Q8N6G1 96 aa11.35□□□□□ -0.59
SDC1-203ENST00000403076 TRAV13-2A0A0B4J235 113 aa11.34□□□□□ -0.59
SDC1-203ENST00000403076 RPL37AP8A6NKH3 93 aa11.34□□□□□ -0.59
SDC1-203ENST00000403076 CFC1BP0CG36 223 aa11.34□□□□□ -0.59
SDC1-203ENST00000403076 CFC1P0CG37 223 aa11.34□□□□□ -0.59
SDC1-203ENST00000403076 TRBV10-3A0A0K0K1G6 114 aa11.33□□□□□ -0.6
SDC1-203ENST00000403076 DYNC1H1Q14204 4646 aaKnown RBP11.33□□□□□ -0.6
SDC1-203ENST00000403076 XGP55808 180 aa11.32□□□□□ -0.6
SDC1-203ENST00000403076 PKHD1P08F94 4074 aa11.32□□□□□ -0.6
SDC1-203ENST00000403076 A0A0B4J2C4 111 aa11.31□□□□□ -0.6
SDC1-203ENST00000403076 TMEM126AQ9H061 195 aa11.31□□□□□ -0.6
SDC1-203ENST00000403076 IGLV1-50A0A075B6I6 118 aa11.3□□□□□ -0.6
SDC1-203ENST00000403076 A0A1B0GWB2 263 aa11.3□□□□□ -0.6
SDC1-203ENST00000403076 RPL13AP40429 203 aaKnown RBP11.3□□□□□ -0.6
SDC1-203ENST00000403076 IGLV6-57P01721 117 aa11.29□□□□□ -0.6
SDC1-203ENST00000403076 PRO1854Q9UHT4 67 aa11.29□□□□□ -0.6
SDC1-203ENST00000403076 LRP1BQ9NZR2 4599 aa11.28□□□□□ -0.6
SDC1-203ENST00000403076 H7C2G1 150 aa11.28□□□□□ -0.6
SDC1-203ENST00000403076 K7ERJ3 54 aa11.28□□□□□ -0.6
SDC1-203ENST00000403076 DNAH8Q96JB1 4490 aa11.28□□□□□ -0.6
SDC1-203ENST00000403076 CBY1Q9Y3M2 126 aa11.27□□□□□ -0.61
SDC1-203ENST00000403076 BIRC6Q9NR09 4857 aa11.27□□□□□ -0.61
SDC1-203ENST00000403076 CDK2AP2O75956 126 aa11.26□□□□□ -0.61
SDC1-203ENST00000403076 TRAV23DV6A0A075B6W5 121 aa11.25□□□□□ -0.61
SDC1-203ENST00000403076 SMR3BP02814 79 aaPredicted RBP11.25□□□□□ -0.61
SDC1-203ENST00000403076 Q1RN00 199 aa11.25□□□□□ -0.61
SDC1-203ENST00000403076 SNHG12Q9BXW3 62 aa11.25□□□□□ -0.61
SDC1-203ENST00000403076 KRTAP11-1Q8IUC1 163 aa11.25□□□□□ -0.61
SDC1-203ENST00000403076 PRYO14603 147 aa11.24□□□□□ -0.61
SDC1-203ENST00000403076 REG3GQ6UW15 175 aa11.24□□□□□ -0.61
SDC1-203ENST00000403076 KCNQ1DNQ9H478 68 aa11.24□□□□□ -0.61
SDC1-203ENST00000403076 SMIM11BQ8TCY0 68 aa11.22□□□□□ -0.61
SDC1-203ENST00000403076 PSORS1C2Q9UIG4 136 aa11.21□□□□□ -0.61
SDC1-203ENST00000403076 ZNF73O43830 326 aaPredicted RBP11.2□□□□□ -0.62
SDC1-203ENST00000403076 LINC00528Q8N1L1 170 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms