RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 LGALS3P17931 250 aaKnown RBP9.78□□□□□ -0.84
CUX2-202ENST00000397643 GAGE2BQ13066 116 aa9.78□□□□□ -0.84
CUX2-202ENST00000397643 JOSD1Q15040 202 aaPredicted RBP9.78□□□□□ -0.84
CUX2-202ENST00000397643 C10orf25Q5T742 122 aa9.78□□□□□ -0.84
CUX2-202ENST00000397643 LOC107984640A0A0U1RRK4 108 aa9.77□□□□□ -0.85
CUX2-202ENST00000397643 C6orf48Q9UBA6 75 aa9.77□□□□□ -0.85
CUX2-202ENST00000397643 C9orf116Q5BN46 136 aaPredicted RBP9.76□□□□□ -0.85
CUX2-202ENST00000397643 NDUFA12Q9UI09 145 aa9.76□□□□□ -0.85
CUX2-202ENST00000397643 MYMXA0A1B0GTQ4 84 aa9.75□□□□□ -0.85
CUX2-202ENST00000397643 NMUP48645 174 aa9.75□□□□□ -0.85
CUX2-202ENST00000397643 TSPEAR-AS2P59090 65 aa9.75□□□□□ -0.85
CUX2-202ENST00000397643 HERV-K104P63124 156 aa9.75□□□□□ -0.85
CUX2-202ENST00000397643 C1orf137Q5JT78 98 aa9.75□□□□□ -0.85
CUX2-202ENST00000397643 ZNF625Q96I27 306 aaPredicted RBP9.75□□□□□ -0.85
CUX2-202ENST00000397643 ANKRD39Q53RE8 183 aa9.74□□□□□ -0.85
CUX2-202ENST00000397643 PHF5AQ7RTV0 110 aaKnown RBP9.74□□□□□ -0.85
CUX2-202ENST00000397643 FAT4Q6V0I7 4981 aa9.73□□□□□ -0.85
CUX2-202ENST00000397643 IGKV2D-26A0A0A0MRZ7 120 aa9.72□□□□□ -0.85
CUX2-202ENST00000397643 IGLV7-43P04211 117 aa9.72□□□□□ -0.85
CUX2-202ENST00000397643 PYY3Q5JQD4 70 aa9.72□□□□□ -0.85
CUX2-202ENST00000397643 LINC00587B1AMM8 73 aa9.71□□□□□ -0.86
CUX2-202ENST00000397643 NDUFC2-KCTD14E9PQ53 114 aa9.71□□□□□ -0.86
CUX2-202ENST00000397643 KRTAP1-4P0C5Y4 121 aa9.71□□□□□ -0.86
CUX2-202ENST00000397643 TLX1NBP0CAT3 122 aa9.71□□□□□ -0.86
CUX2-202ENST00000397643 RPL18AQ02543 176 aaKnown RBP9.71□□□□□ -0.86
CUX2-202ENST00000397643 KRTAP11-1Q8IUC1 163 aa9.71□□□□□ -0.86
CUX2-202ENST00000397643 DIRC1Q969H9 104 aa9.71□□□□□ -0.86
CUX2-202ENST00000397643 LCE2AQ5TA79 106 aaPredicted RBP9.7□□□□□ -0.86
CUX2-202ENST00000397643 VAMP8Q9BV40 100 aa9.7□□□□□ -0.86
CUX2-202ENST00000397643 ERG28Q9UKR5 140 aa9.7□□□□□ -0.86
CUX2-202ENST00000397643 ZNF815PA8K554 130 aa9.69□□□□□ -0.86
CUX2-202ENST00000397643 H0Y9J4 135 aa9.69□□□□□ -0.86
CUX2-202ENST00000397643 PFN2P35080 140 aa9.69□□□□□ -0.86
CUX2-202ENST00000397643 COX17Q14061 63 aa9.69□□□□□ -0.86
CUX2-202ENST00000397643 MEIG1Q5JSS6 88 aa9.69□□□□□ -0.86
CUX2-202ENST00000397643 LINC00158P58513 81 aa9.68□□□□□ -0.86
CUX2-202ENST00000397643 IGLV1-50A0A075B6I6 118 aa9.67□□□□□ -0.86
CUX2-202ENST00000397643 GAGE2EQ4V326 116 aa9.67□□□□□ -0.86
CUX2-202ENST00000397643 GAGE2DQ9UEU5 116 aa9.67□□□□□ -0.86
CUX2-202ENST00000397643 PAM16Q9Y3D7 125 aa9.67□□□□□ -0.86
CUX2-202ENST00000397643 A0A0J9YXY3 114 aa9.66□□□□□ -0.86
CUX2-202ENST00000397643 A0A0U1RQV1 116 aa9.66□□□□□ -0.86
CUX2-202ENST00000397643 KRTAP9-6A0A140TA67 174 aa9.66□□□□□ -0.86
CUX2-202ENST00000397643 LOC105371267A0A1B0GV96 52 aa9.66□□□□□ -0.86
CUX2-202ENST00000397643 PRR4Q16378 134 aa9.66□□□□□ -0.86
CUX2-202ENST00000397643 SPATA45Q537H7 98 aa9.66□□□□□ -0.86
CUX2-202ENST00000397643 PCP2Q8IVA1 136 aa9.66□□□□□ -0.86
CUX2-202ENST00000397643 TTTY13Q9BZ97 58 aa9.66□□□□□ -0.86
CUX2-202ENST00000397643 SMIM13P0DJ93 91 aa9.65□□□□□ -0.86
CUX2-202ENST00000397643 A0A0U1RRA0 63 aa9.64□□□□□ -0.87
CUX2-202ENST00000397643 FAM168BA1KXE4 195 aa9.64□□□□□ -0.87
CUX2-202ENST00000397643 SCGB1D4Q6XE38 83 aa9.64□□□□□ -0.87
CUX2-202ENST00000397643 S100A12P80511 92 aa9.63□□□□□ -0.87
CUX2-202ENST00000397643 TIMM17BO60830 172 aa9.62□□□□□ -0.87
CUX2-202ENST00000397643 KRTAP7-1Q8IUC3 87 aa9.62□□□□□ -0.87
CUX2-202ENST00000397643 XAGE1AQ9HD64 81 aa9.62□□□□□ -0.87
CUX2-202ENST00000397643 SMIM6P0DI80 62 aa9.61□□□□□ -0.87
CUX2-202ENST00000397643 COX8AP10176 69 aa9.61□□□□□ -0.87
CUX2-202ENST00000397643 MIR7-3HGQ8N6C7 128 aa9.61□□□□□ -0.87
CUX2-202ENST00000397643 SND1-IT1Q9HBX3 110 aa9.61□□□□□ -0.87
CUX2-202ENST00000397643 C9orf129Q5T035 196 aaKnown RBP9.6□□□□□ -0.87
CUX2-202ENST00000397643 DLEU1O43261 78 aa9.59□□□□□ -0.87
CUX2-202ENST00000397643 BOD1L2Q8IYS8 172 aa9.59□□□□□ -0.87
CUX2-202ENST00000397643 C14orf144Q96I85 54 aa9.59□□□□□ -0.87
CUX2-202ENST00000397643 TMEM238C9JI98 176 aa9.58□□□□□ -0.88
CUX2-202ENST00000397643 RPL13AP40429 203 aaKnown RBP9.58□□□□□ -0.88
CUX2-202ENST00000397643 SLC25A34Q6PIV7 304 aa9.58□□□□□ -0.88
CUX2-202ENST00000397643 FAM19A5Q7Z5A7 132 aaPredicted RBP9.58□□□□□ -0.88
CUX2-202ENST00000397643 ADAMTSL4-AS1Q5T5F5 129 aa9.57□□□□□ -0.88
CUX2-202ENST00000397643 DAND5Q8N907 189 aa9.57□□□□□ -0.88
CUX2-202ENST00000397643 LITAFQ99732 161 aa9.57□□□□□ -0.88
CUX2-202ENST00000397643 MIEN1Q9BRT3 115 aa9.57□□□□□ -0.88
CUX2-202ENST00000397643 MUC17Q685J3 4493 aa9.56□□□□□ -0.88
CUX2-202ENST00000397643 RPL24P83731 157 aaKnown RBP9.55□□□□□ -0.88
CUX2-202ENST00000397643 Q6ZVH6 145 aa9.55□□□□□ -0.88
CUX2-202ENST00000397643 SPANXDQ9BXN6 97 aa9.55□□□□□ -0.88
CUX2-202ENST00000397643 SPANXCQ9NY87 97 aa9.55□□□□□ -0.88
CUX2-202ENST00000397643 COPS9Q8WXC6 57 aa9.54□□□□□ -0.88
CUX2-202ENST00000397643 LOC107984156A0A0G2JMH3 177 aa9.53□□□□□ -0.88
CUX2-202ENST00000397643 M0QXV9 152 aa9.53□□□□□ -0.88
CUX2-202ENST00000397643 ARL17AQ8IVW1 177 aa9.53□□□□□ -0.88
CUX2-202ENST00000397643 IFITM1P13164 125 aa9.52□□□□□ -0.89
CUX2-202ENST00000397643 NPC2P61916 151 aa9.52□□□□□ -0.89
CUX2-202ENST00000397643 NKAPP1Q8N9T2 125 aa9.52□□□□□ -0.89
CUX2-202ENST00000397643 LINC00308Q8TCZ7 52 aa9.52□□□□□ -0.89
CUX2-202ENST00000397643 SPANXB1Q9NS25 103 aaPredicted RBP9.52□□□□□ -0.89
CUX2-202ENST00000397643 TP73-AS1Q9UF72 201 aa9.52□□□□□ -0.89
CUX2-202ENST00000397643 IGLV5-37A0A075B6J1 123 aa9.51□□□□□ -0.89
CUX2-202ENST00000397643 TSPAN13O95857 204 aa9.51□□□□□ -0.89
CUX2-202ENST00000397643 UBE2BP63146 152 aa9.51□□□□□ -0.89
CUX2-202ENST00000397643 LBHQ53QV2 105 aaPredicted RBP9.51□□□□□ -0.89
CUX2-202ENST00000397643 C22orf24Q9Y442 160 aa9.51□□□□□ -0.89
CUX2-202ENST00000397643 VPREB1P12018 145 aa9.5□□□□□ -0.89
CUX2-202ENST00000397643 SOSTDC1Q6X4U4 206 aa9.5□□□□□ -0.89
CUX2-202ENST00000397643 C12orf57Q99622 126 aa9.5□□□□□ -0.89
CUX2-202ENST00000397643 HIGD1BQ9P298 99 aa9.5□□□□□ -0.89
CUX2-202ENST00000397643 UQCR10Q9UDW1 63 aa9.5□□□□□ -0.89
CUX2-202ENST00000397643 ZNF861PO60384 105 aa9.48□□□□□ -0.89
CUX2-202ENST00000397643 NDUFC2O95298 119 aa9.48□□□□□ -0.89
CUX2-202ENST00000397643 MRPL55Q7Z7F7 128 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms