RNA–Protein interactions for RNA: ENST00000395761.3

CXCL1-201, Transcript of C-X-C motif chemokine ligand 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CXCL1, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-201ENST00000395761 PCP2Q8IVA1 136 aa10.39□□□□□ -0.75
CXCL1-201ENST00000395761 TTTY13Q9BZ97 58 aa10.39□□□□□ -0.75
CXCL1-201ENST00000395761 COX8AP10176 69 aa10.38□□□□□ -0.75
CXCL1-201ENST00000395761 RPL37AP61513 92 aaKnown RBP10.38□□□□□ -0.75
CXCL1-201ENST00000395761 FAM168BA1KXE4 195 aa10.37□□□□□ -0.75
CXCL1-201ENST00000395761 DLEU1O43261 78 aa10.37□□□□□ -0.75
CXCL1-201ENST00000395761 BOD1L2Q8IYS8 172 aa10.37□□□□□ -0.75
CXCL1-201ENST00000395761 ERG28Q9UKR5 140 aa10.37□□□□□ -0.75
CXCL1-201ENST00000395761 A0A0J9YXY3 114 aa10.36□□□□□ -0.75
CXCL1-201ENST00000395761 C9orf129Q5T035 196 aaKnown RBP10.36□□□□□ -0.75
CXCL1-201ENST00000395761 TIMM17BO60830 172 aa10.34□□□□□ -0.75
CXCL1-201ENST00000395761 KRTAP7-1Q8IUC3 87 aa10.34□□□□□ -0.75
CXCL1-201ENST00000395761 C7orf33Q8WU49 177 aa10.34□□□□□ -0.75
CXCL1-201ENST00000395761 C14orf144Q96I85 54 aa10.34□□□□□ -0.75
CXCL1-201ENST00000395761 MEIG1Q5JSS6 88 aa10.33□□□□□ -0.76
CXCL1-201ENST00000395761 XAGE1AQ9HD64 81 aa10.33□□□□□ -0.76
CXCL1-201ENST00000395761 SMIM13P0DJ93 91 aa10.32□□□□□ -0.76
CXCL1-201ENST00000395761 PFN2P35080 140 aa10.32□□□□□ -0.76
CXCL1-201ENST00000395761 LINC00158P58513 81 aa10.32□□□□□ -0.76
CXCL1-201ENST00000395761 SLC25A34Q6PIV7 304 aa10.32□□□□□ -0.76
CXCL1-201ENST00000395761 PHF5AQ7RTV0 110 aaKnown RBP10.32□□□□□ -0.76
CXCL1-201ENST00000395761 FAM19A5Q7Z5A7 132 aaPredicted RBP10.32□□□□□ -0.76
CXCL1-201ENST00000395761 LINC00518Q8N0U6 118 aa10.32□□□□□ -0.76
CXCL1-201ENST00000395761 C12orf57Q99622 126 aa10.32□□□□□ -0.76
CXCL1-201ENST00000395761 HNRNPA3P51991 378 aaKnown RBP10.31□□□□□ -0.76
CXCL1-201ENST00000395761 SCGB1D4Q6XE38 83 aa10.31□□□□□ -0.76
CXCL1-201ENST00000395761 LITAFQ99732 161 aa10.31□□□□□ -0.76
CXCL1-201ENST00000395761 ADAMTSL4-AS1Q5T5F5 129 aa10.29□□□□□ -0.76
CXCL1-201ENST00000395761 FLG2Q5D862 2391 aaPredicted RBP10.28□□□□□ -0.76
CXCL1-201ENST00000395761 LOC107984156A0A0G2JMH3 177 aa10.28□□□□□ -0.76
CXCL1-201ENST00000395761 A0A0U1RRA0 63 aa10.28□□□□□ -0.76
CXCL1-201ENST00000395761 PRR3P79522 188 aaKnown RBP10.28□□□□□ -0.76
CXCL1-201ENST00000395761 SERTAD4-AS1Q5TG53 156 aa10.28□□□□□ -0.76
CXCL1-201ENST00000395761 ARL17AQ8IVW1 177 aa10.28□□□□□ -0.76
CXCL1-201ENST00000395761 MIR7-3HGQ8N6C7 128 aa10.28□□□□□ -0.76
CXCL1-201ENST00000395761 TMEM238C9JI98 176 aa10.27□□□□□ -0.77
CXCL1-201ENST00000395761 Q6ZVH6 145 aa10.27□□□□□ -0.77
CXCL1-201ENST00000395761 SPANXDQ9BXN6 97 aa10.27□□□□□ -0.77
CXCL1-201ENST00000395761 SND1-IT1Q9HBX3 110 aa10.27□□□□□ -0.77
CXCL1-201ENST00000395761 SPANXCQ9NY87 97 aa10.27□□□□□ -0.77
CXCL1-201ENST00000395761 HIGD1BQ9P298 99 aa10.27□□□□□ -0.77
CXCL1-201ENST00000395761 UQCR10Q9UDW1 63 aa10.27□□□□□ -0.77
CXCL1-201ENST00000395761 KRTAP11-1Q8IUC1 163 aa10.26□□□□□ -0.77
CXCL1-201ENST00000395761 SPANXB1Q9NS25 103 aaPredicted RBP10.26□□□□□ -0.77
CXCL1-201ENST00000395761 M0QXV9 152 aa10.25□□□□□ -0.77
CXCL1-201ENST00000395761 PPDPFQ9H3Y8 114 aa10.25□□□□□ -0.77
CXCL1-201ENST00000395761 TP73-AS1Q9UF72 201 aa10.25□□□□□ -0.77
CXCL1-201ENST00000395761 PKHD1L1Q86WI1 4243 aa10.25□□□□□ -0.77
CXCL1-201ENST00000395761 C2orf91Q6ZV80 131 aa10.24□□□□□ -0.77
CXCL1-201ENST00000395761 MIEN1Q9BRT3 115 aa10.24□□□□□ -0.77
CXCL1-201ENST00000395761 C22orf24Q9Y442 160 aa10.24□□□□□ -0.77
CXCL1-201ENST00000395761 MYCBP2O75592 4640 aa10.24□□□□□ -0.77
CXCL1-201ENST00000395761 IFITM1P13164 125 aa10.23□□□□□ -0.77
CXCL1-201ENST00000395761 DAND5Q8N907 189 aa10.23□□□□□ -0.77
CXCL1-201ENST00000395761 PSORS1C2Q9UIG4 136 aa10.23□□□□□ -0.77
CXCL1-201ENST00000395761 PLA2G2DQ9UNK4 145 aa10.23□□□□□ -0.77
CXCL1-201ENST00000395761 LINC00308Q8TCZ7 52 aa10.22□□□□□ -0.77
CXCL1-201ENST00000395761 PRO1933Q9H354 126 aa10.22□□□□□ -0.77
CXCL1-201ENST00000395761 SRSF9Q13242 221 aaKnown RBP eCLIP10.21□□□□□ -0.77
CXCL1-201ENST00000395761 SOSTDC1Q6X4U4 206 aa10.21□□□□□ -0.77
CXCL1-201ENST00000395761 COPS9Q8WXC6 57 aa10.21□□□□□ -0.77
CXCL1-201ENST00000395761 TAL2Q16559 108 aa10.2□□□□□ -0.78
CXCL1-201ENST00000395761 TSTD3H0UI37 97 aa10.19□□□□□ -0.78
CXCL1-201ENST00000395761 EIF4EBP3O60516 100 aaPredicted RBP10.19□□□□□ -0.78
CXCL1-201ENST00000395761 UBE2BP63146 152 aa10.19□□□□□ -0.78
CXCL1-201ENST00000395761 C1orf137Q5JT78 98 aa10.19□□□□□ -0.78
CXCL1-201ENST00000395761 IGLV5-37A0A075B6J1 123 aa10.18□□□□□ -0.78
CXCL1-201ENST00000395761 NDUFC2O95298 119 aa10.18□□□□□ -0.78
CXCL1-201ENST00000395761 RPL24P83731 157 aaKnown RBP10.18□□□□□ -0.78
CXCL1-201ENST00000395761 MUSTN1Q8IVN3 82 aa10.18□□□□□ -0.78
CXCL1-201ENST00000395761 HIST1H4GQ99525 98 aa10.18□□□□□ -0.78
CXCL1-201ENST00000395761 VPREB1P12018 145 aa10.17□□□□□ -0.78
CXCL1-201ENST00000395761 LBHQ53QV2 105 aaPredicted RBP10.17□□□□□ -0.78
CXCL1-201ENST00000395761 MRPL55Q7Z7F7 128 aaKnown RBP10.17□□□□□ -0.78
CXCL1-201ENST00000395761 Q8NDZ9 215 aa10.17□□□□□ -0.78
CXCL1-201ENST00000395761 LRP1Q07954 4544 aaKnown RBP10.17□□□□□ -0.78
CXCL1-201ENST00000395761 GAGE10A6NGK3 116 aa10.16□□□□□ -0.78
CXCL1-201ENST00000395761 NPC2P61916 151 aa10.16□□□□□ -0.78
CXCL1-201ENST00000395761 LINC00167Q96N53 147 aa10.16□□□□□ -0.78
CXCL1-201ENST00000395761 FAT3Q8TDW7 4589 aa10.14□□□□□ -0.79
CXCL1-201ENST00000395761 RPL37AP8A6NKH3 93 aa10.14□□□□□ -0.79
CXCL1-201ENST00000395761 HSD52Q0P140 79 aa10.14□□□□□ -0.79
CXCL1-201ENST00000395761 NKAPP1Q8N9T2 125 aa10.14□□□□□ -0.79
CXCL1-201ENST00000395761 KRTAP29-1A8MX34 341 aaPredicted RBP10.13□□□□□ -0.79
CXCL1-201ENST00000395761 IGLV7-43P04211 117 aa10.13□□□□□ -0.79
CXCL1-201ENST00000395761 SPINK6Q6UWN8 80 aa10.13□□□□□ -0.79
CXCL1-201ENST00000395761 TRBV10-2A0A0K0K1G8 114 aa10.12□□□□□ -0.79
CXCL1-201ENST00000395761 CEND1Q8N111 149 aa10.12□□□□□ -0.79
CXCL1-201ENST00000395761 M0R378 163 aa10.11□□□□□ -0.79
CXCL1-201ENST00000395761 OXTP01178 125 aa10.1□□□□□ -0.79
CXCL1-201ENST00000395761 IGKV2-28A0A075B6P5 120 aa10.09□□□□□ -0.79
CXCL1-201ENST00000395761 A4D1N5 150 aa10.09□□□□□ -0.79
CXCL1-201ENST00000395761 J3QL48 77 aa10.09□□□□□ -0.79
CXCL1-201ENST00000395761 IGKV2D-28P01615 120 aa10.09□□□□□ -0.79
CXCL1-201ENST00000395761 DMBT1Q9UGM3 2413 aaPredicted RBP10.08□□□□□ -0.8
CXCL1-201ENST00000395761 DDTP30046 118 aa10.08□□□□□ -0.8
CXCL1-201ENST00000395761 CTAG1AP78358 180 aa10.08□□□□□ -0.8
CXCL1-201ENST00000395761 IGLV1-50A0A075B6I6 118 aa10.07□□□□□ -0.8
CXCL1-201ENST00000395761 TMEM238LA0A1B0GVL6 79 aa10.06□□□□□ -0.8
CXCL1-201ENST00000395761 A6NJY4 79 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms