RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 NDUFC2O95298 119 aa14.05□□□□□ -0.16
CLK3-202ENST00000395066 TMEM258P61165 79 aa14.04□□□□□ -0.16
CLK3-202ENST00000395066 FAM19A5Q7Z5A7 132 aaPredicted RBP14.04□□□□□ -0.16
CLK3-202ENST00000395066 LYRM9A8MSI8 78 aa14.04□□□□□ -0.16
CLK3-202ENST00000395066 ATP5EP2Q5VTU8 51 aa14.03□□□□□ -0.16
CLK3-202ENST00000395066 UNQ6190/PRO20217Q6UXQ8 127 aa14.02□□□□□ -0.16
CLK3-202ENST00000395066 COX17Q14061 63 aa14.02□□□□□ -0.17
CLK3-202ENST00000395066 NSD1Q96L73 2696 aaPredicted RBP14.02□□□□□ -0.17
CLK3-202ENST00000395066 C6orf99Q4VX62 202 aa14.01□□□□□ -0.17
CLK3-202ENST00000395066 WFDC9Q8NEX5 89 aa14.01□□□□□ -0.17
CLK3-202ENST00000395066 INAFM1C9JVW0 142 aa13.99□□□□□ -0.17
CLK3-202ENST00000395066 C9orf66Q5T8R8 295 aa13.99□□□□□ -0.17
CLK3-202ENST00000395066 DPH3Q96FX2 82 aa13.98□□□□□ -0.17
CLK3-202ENST00000395066 LYPD5Q6UWN5 251 aa13.98□□□□□ -0.17
CLK3-202ENST00000395066 J3QKU1 62 aa13.97□□□□□ -0.17
CLK3-202ENST00000395066 FAM19A1Q7Z5A9 133 aa13.97□□□□□ -0.17
CLK3-202ENST00000395066 Q8NAQ8 132 aa13.97□□□□□ -0.17
CLK3-202ENST00000395066 KLK12Q9UKR0 248 aa13.97□□□□□ -0.17
CLK3-202ENST00000395066 GHRHP01286 108 aa13.97□□□□□ -0.17
CLK3-202ENST00000395066 SPAG11BQ08648 103 aa13.97□□□□□ -0.17
CLK3-202ENST00000395066 ENHOQ6UWT2 76 aa13.97□□□□□ -0.17
CLK3-202ENST00000395066 TRAV23DV6A0A075B6W5 121 aa13.96□□□□□ -0.17
CLK3-202ENST00000395066 UBL5Q9BZL1 73 aa13.96□□□□□ -0.17
CLK3-202ENST00000395066 TEP1Q99973 2627 aaKnown RBP13.96□□□□□ -0.17
CLK3-202ENST00000395066 CYSRT1A8MQ03 144 aa13.94□□□□□ -0.18
CLK3-202ENST00000395066 APOC4P55056 127 aa13.94□□□□□ -0.18
CLK3-202ENST00000395066 PKD1L1Q8TDX9 2849 aa13.94□□□□□ -0.18
CLK3-202ENST00000395066 LINC00575Q6W349 94 aa13.94□□□□□ -0.18
CLK3-202ENST00000395066 DSCR8Q96T75 97 aa13.93□□□□□ -0.18
CLK3-202ENST00000395066 TRBV10-3A0A0K0K1G6 114 aa13.93□□□□□ -0.18
CLK3-202ENST00000395066 RBM3P98179 157 aaKnown RBP13.9□□□□□ -0.18
CLK3-202ENST00000395066 XAGE1AQ9HD64 81 aa13.9□□□□□ -0.18
CLK3-202ENST00000395066 Q6ZQT0 140 aa13.9□□□□□ -0.18
CLK3-202ENST00000395066 C5orf47Q569G3 176 aa13.89□□□□□ -0.19
CLK3-202ENST00000395066 KMT2BQ9UMN6 2715 aaPredicted RBP13.88□□□□□ -0.19
CLK3-202ENST00000395066 ZNF561-AS1K7EIQ3 104 aa13.88□□□□□ -0.19
CLK3-202ENST00000395066 SPART-AS1P0CW21 52 aa13.88□□□□□ -0.19
CLK3-202ENST00000395066 LELP1Q5T871 98 aa13.88□□□□□ -0.19
CLK3-202ENST00000395066 OXTP01178 125 aa13.88□□□□□ -0.19
CLK3-202ENST00000395066 IGHV4-30-4P0DP06 118 aa13.87□□□□□ -0.19
CLK3-202ENST00000395066 MIFP14174 115 aa13.87□□□□□ -0.19
CLK3-202ENST00000395066 LAMTOR3Q9UHA4 124 aa13.87□□□□□ -0.19
CLK3-202ENST00000395066 LOC110117498A0A087WWA1 95 aa13.86□□□□□ -0.19
CLK3-202ENST00000395066 M0R2N4 97 aa13.84□□□□□ -0.19
CLK3-202ENST00000395066 PRR34Q9NV39 138 aa13.84□□□□□ -0.19
CLK3-202ENST00000395066 C6orf48Q9UBA6 75 aa13.84□□□□□ -0.19
CLK3-202ENST00000395066 NDUFC2-KCTD14E9PQ53 114 aa13.83□□□□□ -0.19
CLK3-202ENST00000395066 HIGD2BQ4VC39 106 aa13.83□□□□□ -0.19
CLK3-202ENST00000395066 C20orf197Q8N268 126 aa13.83□□□□□ -0.2
CLK3-202ENST00000395066 RETNQ9HD89 108 aa13.83□□□□□ -0.2
CLK3-202ENST00000395066 A0A0J9YWU9 116 aa13.82□□□□□ -0.2
CLK3-202ENST00000395066 WFDC10BQ8IUB3 73 aa13.81□□□□□ -0.2
CLK3-202ENST00000395066 IGLV6-57P01721 117 aa13.81□□□□□ -0.2
CLK3-202ENST00000395066 MUC7Q8TAX7 377 aa13.81□□□□□ -0.2
CLK3-202ENST00000395066 LINC01547P58512 204 aaPredicted RBP13.8□□□□□ -0.2
CLK3-202ENST00000395066 Q6ZQY7 126 aa13.8□□□□□ -0.2
CLK3-202ENST00000395066 ANK2Q01484 3957 aa13.79□□□□□ -0.2
CLK3-202ENST00000395066 HAMPP81172 84 aa13.79□□□□□ -0.2
CLK3-202ENST00000395066 Q6ZVQ6 151 aa13.79□□□□□ -0.2
CLK3-202ENST00000395066 TENM3Q9P273 2699 aa13.77□□□□□ -0.21
CLK3-202ENST00000395066 BCE1O60756 84 aa13.77□□□□□ -0.21
CLK3-202ENST00000395066 TRAV7A0A075B6U4 112 aa13.76□□□□□ -0.21
CLK3-202ENST00000395066 PDE6GP18545 87 aa13.75□□□□□ -0.21
CLK3-202ENST00000395066 H3BQ85 93 aa13.74□□□□□ -0.21
CLK3-202ENST00000395066 OXLD1Q5BKU9 147 aa13.74□□□□□ -0.21
CLK3-202ENST00000395066 FAM236DA0A1B0GTK5 79 aa13.72□□□□□ -0.21
CLK3-202ENST00000395066 FAM236CP0DP71 79 aa13.72□□□□□ -0.21
CLK3-202ENST00000395066 Q5XG85 94 aa13.72□□□□□ -0.21
CLK3-202ENST00000395066 C4orf26Q17RF5 130 aa13.72□□□□□ -0.21
CLK3-202ENST00000395066 KPRPQ5T749 579 aaPredicted RBP13.72□□□□□ -0.21
CLK3-202ENST00000395066 DIRC1Q969H9 104 aa13.72□□□□□ -0.21
CLK3-202ENST00000395066 CAMK2N2Q96S95 79 aa13.72□□□□□ -0.21
CLK3-202ENST00000395066 TRAV10A0A0B4J240 114 aa13.71□□□□□ -0.21
CLK3-202ENST00000395066 CXCL6P80162 114 aa13.71□□□□□ -0.21
CLK3-202ENST00000395066 Q6ZTC4 211 aa13.71□□□□□ -0.22
CLK3-202ENST00000395066 GVQW2A0A096LPI5 108 aaPredicted RBP13.7□□□□□ -0.22
CLK3-202ENST00000395066 H7BZZ5 65 aa13.7□□□□□ -0.22
CLK3-202ENST00000395066 Q6ZRU5 148 aa13.7□□□□□ -0.22
CLK3-202ENST00000395066 ZNF73O43830 326 aaPredicted RBP13.69□□□□□ -0.22
CLK3-202ENST00000395066 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.67□□□□□ -0.22
CLK3-202ENST00000395066 KRTAP26-1Q6PEX3 210 aa13.67□□□□□ -0.22
CLK3-202ENST00000395066 TRBV7-4A0A0J9YYF1 115 aa13.66□□□□□ -0.22
CLK3-202ENST00000395066 KLKP1Q107X0 134 aa13.66□□□□□ -0.22
CLK3-202ENST00000395066 COX7BP24311 80 aa13.66□□□□□ -0.22
CLK3-202ENST00000395066 VPREB1P12018 145 aa13.65□□□□□ -0.22
CLK3-202ENST00000395066 KRTAP10-11P60412 298 aa13.65□□□□□ -0.22
CLK3-202ENST00000395066 C15orf56Q8N910 161 aa13.65□□□□□ -0.22
CLK3-202ENST00000395066 HRCT1Q6UXD1 115 aa13.65□□□□□ -0.22
CLK3-202ENST00000395066 ESRGQ1W209 222 aa13.64□□□□□ -0.23
CLK3-202ENST00000395066 ELOF1P60002 83 aaKnown RBP13.63□□□□□ -0.23
CLK3-202ENST00000395066 SCXQ7RTU7 201 aa13.63□□□□□ -0.23
CLK3-202ENST00000395066 SNURFQ9Y675 71 aa13.63□□□□□ -0.23
CLK3-202ENST00000395066 STAB1Q9NY15 2570 aa13.62□□□□□ -0.23
CLK3-202ENST00000395066 SERP1Q9Y6X1 66 aa13.62□□□□□ -0.23
CLK3-202ENST00000395066 RMI2Q96E14 147 aa13.61□□□□□ -0.23
CLK3-202ENST00000395066 EPM2AB3EWF7 344 aa13.6□□□□□ -0.23
CLK3-202ENST00000395066 Q6ZRP5 223 aa13.6□□□□□ -0.23
CLK3-202ENST00000395066 FLNBO75369 2602 aaKnown RBP13.59□□□□□ -0.23
CLK3-202ENST00000395066 WIPF1O43516 503 aa13.59□□□□□ -0.23
CLK3-202ENST00000395066 IGKV2D-24A0A075B6R9 120 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms