RNA–Protein interactions for RNA: ENST00000394986.5

SNCA-203, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNCA, Length 1,420 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-203ENST00000394986 HERV-K104P63124 156 aa12.3□□□□□ -0.44
SNCA-203ENST00000394986 UBE2BP63146 152 aa12.3□□□□□ -0.44
SNCA-203ENST00000394986 SNRPEP62304 92 aaKnown RBP12.29□□□□□ -0.44
SNCA-203ENST00000394986 ATOH7Q8N100 152 aa12.28□□□□□ -0.44
SNCA-203ENST00000394986 PLA2G2DQ9UNK4 145 aa12.28□□□□□ -0.44
SNCA-203ENST00000394986 C20orf202A1L168 122 aa12.28□□□□□ -0.44
SNCA-203ENST00000394986 Q8NDZ9 215 aa12.28□□□□□ -0.44
SNCA-203ENST00000394986 C1orf137Q5JT78 98 aa12.27□□□□□ -0.45
SNCA-203ENST00000394986 MRPL55Q7Z7F7 128 aaKnown RBP12.27□□□□□ -0.45
SNCA-203ENST00000394986 IGKV2D-26A0A0A0MRZ7 120 aa12.26□□□□□ -0.45
SNCA-203ENST00000394986 GAGE10A6NGK3 116 aa12.26□□□□□ -0.45
SNCA-203ENST00000394986 NMUP48645 174 aa12.26□□□□□ -0.45
SNCA-203ENST00000394986 MIR7-3HGQ8N6C7 128 aa12.26□□□□□ -0.45
SNCA-203ENST00000394986 TP73-AS1Q9UF72 201 aa12.26□□□□□ -0.45
SNCA-203ENST00000394986 IGLV5-37A0A075B6J1 123 aa12.25□□□□□ -0.45
SNCA-203ENST00000394986 VPREB1P12018 145 aa12.25□□□□□ -0.45
SNCA-203ENST00000394986 NKAPP1Q8N9T2 125 aa12.25□□□□□ -0.45
SNCA-203ENST00000394986 LBHQ53QV2 105 aaPredicted RBP12.24□□□□□ -0.45
SNCA-203ENST00000394986 DAND5Q8N907 189 aa12.24□□□□□ -0.45
SNCA-203ENST00000394986 LINC00167Q96N53 147 aa12.24□□□□□ -0.45
SNCA-203ENST00000394986 TTTY13Q9BZ97 58 aa12.24□□□□□ -0.45
SNCA-203ENST00000394986 C5orf52A6NGY3 159 aa12.23□□□□□ -0.45
SNCA-203ENST00000394986 LRP1Q07954 4544 aaKnown RBP12.23□□□□□ -0.45
SNCA-203ENST00000394986 RPL37AP8A6NKH3 93 aa12.22□□□□□ -0.45
SNCA-203ENST00000394986 LINC00587B1AMM8 73 aa12.21□□□□□ -0.45
SNCA-203ENST00000394986 ANKRD39Q53RE8 183 aa12.21□□□□□ -0.45
SNCA-203ENST00000394986 A0A0J9YXY3 114 aa12.2□□□□□ -0.46
SNCA-203ENST00000394986 SRSF9Q13242 221 aaKnown RBP eCLIP12.2□□□□□ -0.46
SNCA-203ENST00000394986 IGLV7-43P04211 117 aa12.2□□□□□ -0.46
SNCA-203ENST00000394986 RPL24P83731 157 aaKnown RBP12.2□□□□□ -0.46
SNCA-203ENST00000394986 FAT3Q8TDW7 4589 aa12.19□□□□□ -0.46
SNCA-203ENST00000394986 BOD1L2Q8IYS8 172 aa12.19□□□□□ -0.46
SNCA-203ENST00000394986 IGKV2-28A0A075B6P5 120 aa12.18□□□□□ -0.46
SNCA-203ENST00000394986 IGKV2D-28P01615 120 aa12.18□□□□□ -0.46
SNCA-203ENST00000394986 SPINK6Q6UWN8 80 aa12.18□□□□□ -0.46
SNCA-203ENST00000394986 ZNF815PA8K554 130 aa12.17□□□□□ -0.46
SNCA-203ENST00000394986 KRTAP29-1A8MX34 341 aaPredicted RBP12.16□□□□□ -0.46
SNCA-203ENST00000394986 ADAMTSL4-AS1Q5T5F5 129 aa12.16□□□□□ -0.46
SNCA-203ENST00000394986 NCR3O14931 201 aa12.14□□□□□ -0.47
SNCA-203ENST00000394986 AKR1D1P51857 326 aa12.14□□□□□ -0.47
SNCA-203ENST00000394986 NPC2P61916 151 aa12.14□□□□□ -0.47
SNCA-203ENST00000394986 DMBT1Q9UGM3 2413 aaPredicted RBP12.14□□□□□ -0.47
SNCA-203ENST00000394986 J3QL48 77 aa12.13□□□□□ -0.47
SNCA-203ENST00000394986 LITAFQ99732 161 aa12.13□□□□□ -0.47
SNCA-203ENST00000394986 IGLV1-50A0A075B6I6 118 aa12.12□□□□□ -0.47
SNCA-203ENST00000394986 EIF4EBP3O60516 100 aaPredicted RBP12.12□□□□□ -0.47
SNCA-203ENST00000394986 OXTP01178 125 aa12.12□□□□□ -0.47
SNCA-203ENST00000394986 SOSTDC1Q6X4U4 206 aa12.11□□□□□ -0.47
SNCA-203ENST00000394986 PCP2Q8IVA1 136 aa12.11□□□□□ -0.47
SNCA-203ENST00000394986 LOC107984156A0A0G2JMH3 177 aa12.11□□□□□ -0.47
SNCA-203ENST00000394986 TMEM238C9JI98 176 aa12.11□□□□□ -0.47
SNCA-203ENST00000394986 M0R378 163 aa12.11□□□□□ -0.47
SNCA-203ENST00000394986 BCE1O60756 84 aa12.11□□□□□ -0.47
SNCA-203ENST00000394986 SCGB1D1O95968 90 aa12.11□□□□□ -0.47
SNCA-203ENST00000394986 ARL17AQ8IVW1 177 aa12.11□□□□□ -0.47
SNCA-203ENST00000394986 MIEN1Q9BRT3 115 aa12.1□□□□□ -0.47
SNCA-203ENST00000394986 TMA7Q9Y2S6 64 aaKnown RBP12.1□□□□□ -0.47
SNCA-203ENST00000394986 TIMM17BO60830 172 aa12.08□□□□□ -0.48
SNCA-203ENST00000394986 H0Y9J4 135 aa12.07□□□□□ -0.48
SNCA-203ENST00000394986 REG3GQ6UW15 175 aa12.07□□□□□ -0.48
SNCA-203ENST00000394986 SCGB1D4Q6XE38 83 aa12.07□□□□□ -0.48
SNCA-203ENST00000394986 DIRC1Q969H9 104 aa12.07□□□□□ -0.48
SNCA-203ENST00000394986 TMEM126AQ9H061 195 aa12.07□□□□□ -0.48
SNCA-203ENST00000394986 ZNF861PO60384 105 aa12.06□□□□□ -0.48
SNCA-203ENST00000394986 HSBP1L1C9JCN9 74 aa12.05□□□□□ -0.48
SNCA-203ENST00000394986 LINC00308Q8TCZ7 52 aa12.05□□□□□ -0.48
SNCA-203ENST00000394986 TRBV10-3A0A0K0K1G6 114 aa12.04□□□□□ -0.48
SNCA-203ENST00000394986 MT1HL1P0DM35 61 aa12.04□□□□□ -0.48
SNCA-203ENST00000394986 HERC1Q15751 4861 aa12.03□□□□□ -0.48
SNCA-203ENST00000394986 RPL28P46779 137 aaKnown RBP12.03□□□□□ -0.48
SNCA-203ENST00000394986 UBE2AP49459 152 aa12.03□□□□□ -0.48
SNCA-203ENST00000394986 KRTAP13-1Q8IUC0 172 aa12.03□□□□□ -0.48
SNCA-203ENST00000394986 LINC01600Q96MT4 127 aa12.03□□□□□ -0.48
SNCA-203ENST00000394986 SPANXB1Q9NS25 103 aaPredicted RBP12.03□□□□□ -0.48
SNCA-203ENST00000394986 NDUFC2O95298 119 aa12.02□□□□□ -0.49
SNCA-203ENST00000394986 PRLHP81277 87 aa12.02□□□□□ -0.49
SNCA-203ENST00000394986 FAM19A1Q7Z5A9 133 aa12.02□□□□□ -0.49
SNCA-203ENST00000394986 TRBV10-2A0A0K0K1G8 114 aa12.01□□□□□ -0.49
SNCA-203ENST00000394986 SPANXDQ9BXN6 97 aa12□□□□□ -0.49
SNCA-203ENST00000394986 SPANXCQ9NY87 97 aa12□□□□□ -0.49
SNCA-203ENST00000394986 PRYO14603 147 aa11.99□□□□□ -0.49
SNCA-203ENST00000394986 DDTP30046 118 aa11.99□□□□□ -0.49
SNCA-203ENST00000394986 KCNQ1DNQ9H478 68 aa11.98□□□□□ -0.49
SNCA-203ENST00000394986 TNXBP22105 4242 aa11.97□□□□□ -0.49
SNCA-203ENST00000394986 KRTAP1-4P0C5Y4 121 aa11.97□□□□□ -0.49
SNCA-203ENST00000394986 JOSD1Q15040 202 aaPredicted RBP11.95□□□□□ -0.5
SNCA-203ENST00000394986 S100A7L2Q5SY68 101 aa11.95□□□□□ -0.5
SNCA-203ENST00000394986 IGLV6-57P01721 117 aa11.94□□□□□ -0.5
SNCA-203ENST00000394986 SPRR1AP35321 89 aa11.94□□□□□ -0.5
SNCA-203ENST00000394986 PRR26Q8N8Z3 221 aa11.94□□□□□ -0.5
SNCA-203ENST00000394986 PAM16Q9Y3D7 125 aa11.94□□□□□ -0.5
SNCA-203ENST00000394986 KRTAP10-8P60410 259 aa11.93□□□□□ -0.5
SNCA-203ENST00000394986 MUSTN1Q8IVN3 82 aa11.93□□□□□ -0.5
SNCA-203ENST00000394986 KRTAP4-16G5E9R7 235 aaPredicted RBP11.92□□□□□ -0.5
SNCA-203ENST00000394986 LINC00337Q8N6G1 96 aa11.92□□□□□ -0.5
SNCA-203ENST00000394986 HIGD2AQ9BW72 106 aa11.92□□□□□ -0.5
SNCA-203ENST00000394986 ETDCA0A1B0GVM5 59 aa11.91□□□□□ -0.5
SNCA-203ENST00000394986 COX8AP10176 69 aa11.91□□□□□ -0.5
SNCA-203ENST00000394986 IFITM1P13164 125 aa11.91□□□□□ -0.5
SNCA-203ENST00000394986 S100A12P80511 92 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms