RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 Q6ZRU5 148 aa16.68■□□□□ 0.26
SHOX2-201ENST00000389589 PPDPFLQ8WWR9 84 aa16.68■□□□□ 0.26
SHOX2-201ENST00000389589 TMEM126AQ9H061 195 aa16.68■□□□□ 0.26
SHOX2-201ENST00000389589 PRR3P79522 188 aaKnown RBP16.67■□□□□ 0.26
SHOX2-201ENST00000389589 APLNQ9ULZ1 77 aa16.67■□□□□ 0.26
SHOX2-201ENST00000389589 CARD19Q96LW7 228 aa16.66■□□□□ 0.26
SHOX2-201ENST00000389589 VPS25Q9BRG1 176 aa16.66■□□□□ 0.26
SHOX2-201ENST00000389589 SYCNQ0VAF6 134 aa16.63■□□□□ 0.25
SHOX2-201ENST00000389589 Q8NDZ9 215 aa16.63■□□□□ 0.25
SHOX2-201ENST00000389589 NCR3O14931 201 aa16.63■□□□□ 0.25
SHOX2-201ENST00000389589 FAM218AQ96MZ4 157 aa16.63■□□□□ 0.25
SHOX2-201ENST00000389589 NDUFC2-KCTD14E9PQ53 114 aa16.62■□□□□ 0.25
SHOX2-201ENST00000389589 S100A7L2Q5SY68 101 aa16.61■□□□□ 0.25
SHOX2-201ENST00000389589 UBE2DNLQ8IWF7 75 aa16.61■□□□□ 0.25
SHOX2-201ENST00000389589 DYNC2H1Q8NCM8 4307 aaKnown RBP16.6■□□□□ 0.25
SHOX2-201ENST00000389589 NUPR2A6NF83 97 aa16.6■□□□□ 0.25
SHOX2-201ENST00000389589 XAGE1AQ9HD64 81 aa16.59■□□□□ 0.25
SHOX2-201ENST00000389589 USP17L23D6RBM5 183 aa16.58■□□□□ 0.25
SHOX2-201ENST00000389589 DNAH1Q9P2D7 4330 aa16.57■□□□□ 0.24
SHOX2-201ENST00000389589 CBY1Q9Y3M2 126 aa16.57■□□□□ 0.24
SHOX2-201ENST00000389589 A0A087WYN8 130 aa16.54■□□□□ 0.24
SHOX2-201ENST00000389589 DNAL4O96015 105 aa16.54■□□□□ 0.24
SHOX2-201ENST00000389589 IGLV6-57P01721 117 aa16.54■□□□□ 0.24
SHOX2-201ENST00000389589 RPL18AQ02543 176 aaKnown RBP16.54■□□□□ 0.24
SHOX2-201ENST00000389589 CASC10Q5T4H9 136 aa16.54■□□□□ 0.24
SHOX2-201ENST00000389589 BAALC-AS2P0C853 105 aa16.52■□□□□ 0.23
SHOX2-201ENST00000389589 Q6ZRP5 223 aa16.51■□□□□ 0.23
SHOX2-201ENST00000389589 TEX49A0A1B0GTD5 131 aa16.5■□□□□ 0.23
SHOX2-201ENST00000389589 A0A1B0GX51 115 aa16.5■□□□□ 0.23
SHOX2-201ENST00000389589 TLX1NBP0CAT3 122 aa16.5■□□□□ 0.23
SHOX2-201ENST00000389589 GAGE2EQ4V326 116 aa16.5■□□□□ 0.23
SHOX2-201ENST00000389589 GAGE2DQ9UEU5 116 aa16.5■□□□□ 0.23
SHOX2-201ENST00000389589 VPREB1P12018 145 aa16.5■□□□□ 0.23
SHOX2-201ENST00000389589 LECT2O14960 151 aa16.49■□□□□ 0.23
SHOX2-201ENST00000389589 KRTAP1-5Q9BYS1 174 aa16.49■□□□□ 0.23
SHOX2-201ENST00000389589 C6orf99Q4VX62 202 aa16.48■□□□□ 0.23
SHOX2-201ENST00000389589 SLPIP03973 132 aa16.47■□□□□ 0.23
SHOX2-201ENST00000389589 M0R378 163 aa16.46■□□□□ 0.22
SHOX2-201ENST00000389589 KRTAP21-3Q3LHN1 58 aa16.46■□□□□ 0.22
SHOX2-201ENST00000389589 TRBV10-3A0A0K0K1G6 114 aa16.45■□□□□ 0.22
SHOX2-201ENST00000389589 SNCGO76070 127 aa16.44■□□□□ 0.22
SHOX2-201ENST00000389589 PRKDCP78527 4128 aaKnown RBP16.43■□□□□ 0.22
SHOX2-201ENST00000389589 TRAV23DV6A0A075B6W5 121 aa16.42■□□□□ 0.22
SHOX2-201ENST00000389589 C9orf129Q5T035 196 aaKnown RBP16.42■□□□□ 0.22
SHOX2-201ENST00000389589 TTC32Q5I0X7 151 aa16.42■□□□□ 0.22
SHOX2-201ENST00000389589 LINC00167Q96N53 147 aa16.42■□□□□ 0.22
SHOX2-201ENST00000389589 Q8N814 137 aa16.41■□□□□ 0.22
SHOX2-201ENST00000389589 CSMD3Q7Z407 3707 aa16.41■□□□□ 0.22
SHOX2-201ENST00000389589 PSCAO43653 123 aa16.41■□□□□ 0.22
SHOX2-201ENST00000389589 DNHD1Q96M86 4753 aa16.4■□□□□ 0.22
SHOX2-201ENST00000389589 ORMDL1Q9P0S3 153 aa16.39■□□□□ 0.21
SHOX2-201ENST00000389589 C22orf24Q9Y442 160 aa16.39■□□□□ 0.21
SHOX2-201ENST00000389589 DNAH7Q8WXX0 4024 aa16.39■□□□□ 0.21
SHOX2-201ENST00000389589 DIRC1Q969H9 104 aa16.38■□□□□ 0.21
SHOX2-201ENST00000389589 PLA2G2DQ9UNK4 145 aa16.38■□□□□ 0.21
SHOX2-201ENST00000389589 LINC00575Q6W349 94 aa16.38■□□□□ 0.21
SHOX2-201ENST00000389589 LYSTQ99698 3801 aa16.37■□□□□ 0.21
SHOX2-201ENST00000389589 MEGF8Q7Z7M0 2845 aa16.36■□□□□ 0.21
SHOX2-201ENST00000389589 NBDYA0A0U1RRE5 68 aa16.36■□□□□ 0.21
SHOX2-201ENST00000389589 ZNF73O43830 326 aaPredicted RBP16.36■□□□□ 0.21
SHOX2-201ENST00000389589 LOC107984640A0A0U1RRK4 108 aa16.35■□□□□ 0.21
SHOX2-201ENST00000389589 NKAPP1Q8N9T2 125 aa16.35■□□□□ 0.21
SHOX2-201ENST00000389589 TRBV7-6A0A0J9YX20 115 aa16.34■□□□□ 0.21
SHOX2-201ENST00000389589 PLECQ15149 4684 aaKnown RBP16.34■□□□□ 0.21
SHOX2-201ENST00000389589 C14orf177Q52M58 125 aa16.34■□□□□ 0.21
SHOX2-201ENST00000389589 CDIP1Q9H305 208 aa16.34■□□□□ 0.21
SHOX2-201ENST00000389589 INAFM2P0DMQ5 153 aa16.33■□□□□ 0.2
SHOX2-201ENST00000389589 hADV29S1A0JD25 119 aa16.32■□□□□ 0.2
SHOX2-201ENST00000389589 CNBPP62633 177 aaKnown RBP16.31■□□□□ 0.2
SHOX2-201ENST00000389589 SIGMAR1Q99720 223 aa16.31■□□□□ 0.2
SHOX2-201ENST00000389589 SERTAD4-AS1Q5TG53 156 aa16.31■□□□□ 0.2
SHOX2-201ENST00000389589 IGLV5-37A0A075B6J1 123 aa16.3■□□□□ 0.2
SHOX2-201ENST00000389589 COX7BP24311 80 aa16.3■□□□□ 0.2
SHOX2-201ENST00000389589 GAGE2BQ13066 116 aa16.3■□□□□ 0.2
SHOX2-201ENST00000389589 FAM240AA0A1B0GVK7 77 aa16.29■□□□□ 0.2
SHOX2-201ENST00000389589 TMEM256-PLSCR3K7ERE1 68 aa16.28■□□□□ 0.2
SHOX2-201ENST00000389589 TENM2Q9NT68 2774 aa16.28■□□□□ 0.2
SHOX2-201ENST00000389589 ELOF1P60002 83 aaKnown RBP16.28■□□□□ 0.2
SHOX2-201ENST00000389589 C7orf33Q8WU49 177 aa16.26■□□□□ 0.19
SHOX2-201ENST00000389589 OBSCN-AS1Q96MR7 158 aa16.26■□□□□ 0.19
SHOX2-201ENST00000389589 KCNQ1DNQ9H478 68 aa16.25■□□□□ 0.19
SHOX2-201ENST00000389589 STARD9Q9P2P6 4700 aa16.23■□□□□ 0.19
SHOX2-201ENST00000389589 H3BQ85 93 aa16.23■□□□□ 0.19
SHOX2-201ENST00000389589 ACYP1P07311 99 aa16.23■□□□□ 0.19
SHOX2-201ENST00000389589 DNAH10Q8IVF4 4471 aa16.22■□□□□ 0.19
SHOX2-201ENST00000389589 FAM168BA1KXE4 195 aa16.21■□□□□ 0.19
SHOX2-201ENST00000389589 VPS13DQ5THJ4 4388 aa16.19■□□□□ 0.18
SHOX2-201ENST00000389589 LRCOL1A6NCL2 159 aa16.19■□□□□ 0.18
SHOX2-201ENST00000389589 JMJD7-PLA2G4BH0Y9G9 81 aa16.19■□□□□ 0.18
SHOX2-201ENST00000389589 Q6ZRN7 208 aaPredicted RBP16.19■□□□□ 0.18
SHOX2-201ENST00000389589 C16orf90A8MZG2 172 aa16.18■□□□□ 0.18
SHOX2-201ENST00000389589 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP16.18■□□□□ 0.18
SHOX2-201ENST00000389589 LINC00528Q8N1L1 170 aa16.18■□□□□ 0.18
SHOX2-201ENST00000389589 GHRHP01286 108 aa16.17■□□□□ 0.18
SHOX2-201ENST00000389589 XGP55808 180 aa16.17■□□□□ 0.18
SHOX2-201ENST00000389589 Q6ZQY7 126 aa16.17■□□□□ 0.18
SHOX2-201ENST00000389589 IGLV1-50A0A075B6I6 118 aa16.16■□□□□ 0.18
SHOX2-201ENST00000389589 PRYO14603 147 aa16.16■□□□□ 0.18
SHOX2-201ENST00000389589 KRTAP7-1Q8IUC3 87 aa16.16■□□□□ 0.18
SHOX2-201ENST00000389589 IGLV2-33A0A075B6J2 118 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms