RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SLPIP03973 132 aa9.02□□□□□ -0.96
CCDC3-202ENST00000378839 MAST4O15021 2626 aa9.02□□□□□ -0.97
CCDC3-202ENST00000378839 TMEM126AQ9H061 195 aa9.02□□□□□ -0.97
CCDC3-202ENST00000378839 LECT2O14960 151 aa9.01□□□□□ -0.97
CCDC3-202ENST00000378839 WFDC10BQ8IUB3 73 aa9.01□□□□□ -0.97
CCDC3-202ENST00000378839 FAM240AA0A1B0GVK7 77 aa9□□□□□ -0.97
CCDC3-202ENST00000378839 Q6ZTC4 211 aa9□□□□□ -0.97
CCDC3-202ENST00000378839 C14orf132Q9NPU4 83 aa9□□□□□ -0.97
CCDC3-202ENST00000378839 A0A1B0GX51 115 aa8.99□□□□□ -0.97
CCDC3-202ENST00000378839 HIST1H4AP62805 103 aaKnown RBP8.99□□□□□ -0.97
CCDC3-202ENST00000378839 COX17Q14061 63 aa8.99□□□□□ -0.97
CCDC3-202ENST00000378839 SPAG11BQ08648 103 aa8.99□□□□□ -0.97
CCDC3-202ENST00000378839 NCR3O14931 201 aa8.98□□□□□ -0.97
CCDC3-202ENST00000378839 KPRPQ5T749 579 aaPredicted RBP8.98□□□□□ -0.97
CCDC3-202ENST00000378839 CXCL5P42830 114 aa8.98□□□□□ -0.97
CCDC3-202ENST00000378839 EGFEM1PQ0D2K5 195 aa8.98□□□□□ -0.97
CCDC3-202ENST00000378839 TRBV7-7A0A0K0K1E9 115 aa8.97□□□□□ -0.97
CCDC3-202ENST00000378839 H0YGX0 51 aa8.97□□□□□ -0.97
CCDC3-202ENST00000378839 UQCRQO14949 82 aa8.97□□□□□ -0.97
CCDC3-202ENST00000378839 HRCT1Q6UXD1 115 aa8.97□□□□□ -0.97
CCDC3-202ENST00000378839 C4orf26Q17RF5 130 aa8.97□□□□□ -0.97
CCDC3-202ENST00000378839 KRTAP26-1Q6PEX3 210 aa8.97□□□□□ -0.97
CCDC3-202ENST00000378839 NDUFC2O95298 119 aa8.96□□□□□ -0.97
CCDC3-202ENST00000378839 J3KT08 172 aa8.96□□□□□ -0.98
CCDC3-202ENST00000378839 DNAL4O96015 105 aa8.95□□□□□ -0.98
CCDC3-202ENST00000378839 ESRGQ1W209 222 aa8.95□□□□□ -0.98
CCDC3-202ENST00000378839 OBSCN-AS1Q96MR7 158 aa8.95□□□□□ -0.98
CCDC3-202ENST00000378839 A0A0J9YWU9 116 aa8.95□□□□□ -0.98
CCDC3-202ENST00000378839 LINC00643Q86TS7 51 aa8.95□□□□□ -0.98
CCDC3-202ENST00000378839 C6orf48Q9UBA6 75 aa8.95□□□□□ -0.98
CCDC3-202ENST00000378839 C5orf47Q569G3 176 aa8.94□□□□□ -0.98
CCDC3-202ENST00000378839 DNAH1Q9P2D7 4330 aa8.93□□□□□ -0.98
CCDC3-202ENST00000378839 COX7CP15954 63 aa8.93□□□□□ -0.98
CCDC3-202ENST00000378839 LINC00167Q96N53 147 aa8.93□□□□□ -0.98
CCDC3-202ENST00000378839 HUWE1Q7Z6Z7 4374 aaKnown RBP8.92□□□□□ -0.98
CCDC3-202ENST00000378839 HIGD2BQ4VC39 106 aa8.92□□□□□ -0.98
CCDC3-202ENST00000378839 Q8N814 137 aa8.92□□□□□ -0.98
CCDC3-202ENST00000378839 NOTCH1P46531 2555 aa8.92□□□□□ -0.98
CCDC3-202ENST00000378839 C6orf99Q4VX62 202 aa8.91□□□□□ -0.98
CCDC3-202ENST00000378839 PRB2P02812 416 aaPredicted RBP8.91□□□□□ -0.98
CCDC3-202ENST00000378839 XAGE1AQ9HD64 81 aa8.91□□□□□ -0.98
CCDC3-202ENST00000378839 H3BNG1 76 aa8.91□□□□□ -0.98
CCDC3-202ENST00000378839 ACYP1P07311 99 aa8.9□□□□□ -0.98
CCDC3-202ENST00000378839 C15orf56Q8N910 161 aa8.89□□□□□ -0.99
CCDC3-202ENST00000378839 TRAV23DV6A0A075B6W5 121 aa8.89□□□□□ -0.99
CCDC3-202ENST00000378839 GVQW2A0A096LPI5 108 aaPredicted RBP8.89□□□□□ -0.99
CCDC3-202ENST00000378839 OXTP01178 125 aa8.89□□□□□ -0.99
CCDC3-202ENST00000378839 RPL18AQ02543 176 aaKnown RBP8.89□□□□□ -0.99
CCDC3-202ENST00000378839 LINC00846Q9NV44 126 aa8.89□□□□□ -0.99
CCDC3-202ENST00000378839 IGLV6-57P01721 117 aa8.88□□□□□ -0.99
CCDC3-202ENST00000378839 INAFM2P0DMQ5 153 aa8.88□□□□□ -0.99
CCDC3-202ENST00000378839 ORMDL1Q9P0S3 153 aa8.88□□□□□ -0.99
CCDC3-202ENST00000378839 LYSTQ99698 3801 aa8.88□□□□□ -0.99
CCDC3-202ENST00000378839 DEFB131BA0A096LNP1 70 aa8.86□□□□□ -0.99
CCDC3-202ENST00000378839 S100A7L2Q5SY68 101 aa8.86□□□□□ -0.99
CCDC3-202ENST00000378839 C2orf48Q96LS8 159 aa8.86□□□□□ -0.99
CCDC3-202ENST00000378839 LINC00575Q6W349 94 aa8.86□□□□□ -0.99
CCDC3-202ENST00000378839 Q6ZRU5 148 aa8.86□□□□□ -0.99
CCDC3-202ENST00000378839 C11orf45Q8TAV5 145 aa8.85□□□□□ -0.99
CCDC3-202ENST00000378839 NBEAL1Q6ZS30 2694 aa8.85□□□□□ -0.99
CCDC3-202ENST00000378839 TRBV10-3A0A0K0K1G6 114 aa8.85□□□□□ -0.99
CCDC3-202ENST00000378839 USP17L23D6RBM5 183 aa8.84□□□□□ -0.99
CCDC3-202ENST00000378839 ATOX1O00244 68 aa8.84□□□□□ -0.99
CCDC3-202ENST00000378839 COL6A5A8TX70 2615 aa8.84□□□□□ -0.99
CCDC3-202ENST00000378839 DPH3Q96FX2 82 aa8.84□□□□□ -0.99
CCDC3-202ENST00000378839 C20orf197Q8N268 126 aa8.83□□□□□ -1
CCDC3-202ENST00000378839 CAMK2N2Q96S95 79 aa8.83□□□□□ -1
CCDC3-202ENST00000378839 IMUPQ9GZP8 106 aa8.83□□□□□ -1
CCDC3-202ENST00000378839 FAM19A1Q7Z5A9 133 aa8.83□□□□□ -1
CCDC3-202ENST00000378839 ZNF561-AS1K7EIQ3 104 aa8.82□□□□□ -1
CCDC3-202ENST00000378839 LINC01556Q5JQF7 62 aa8.82□□□□□ -1
CCDC3-202ENST00000378839 MUC7Q8TAX7 377 aa8.82□□□□□ -1
CCDC3-202ENST00000378839 VPREB1P12018 145 aa8.81□□□□□ -1
CCDC3-202ENST00000378839 MDFIQ99750 246 aa8.81□□□□□ -1
CCDC3-202ENST00000378839 Q6ZRP5 223 aa8.8□□□□□ -1
CCDC3-202ENST00000378839 GHRHP01286 108 aa8.8□□□□□ -1
CCDC3-202ENST00000378839 CASC10Q5T4H9 136 aa8.8□□□□□ -1
CCDC3-202ENST00000378839 IGKV2D-24A0A075B6R9 120 aa8.79□□□□□ -1
CCDC3-202ENST00000378839 TMEM256-PLSCR3K7ERE1 68 aa8.79□□□□□ -1
CCDC3-202ENST00000378839 CCKP06307 115 aa8.79□□□□□ -1
CCDC3-202ENST00000378839 CRYGAP11844 174 aa8.79□□□□□ -1
CCDC3-202ENST00000378839 PKIGQ9Y2B9 76 aa8.79□□□□□ -1
CCDC3-202ENST00000378839 SERP2Q8N6R1 65 aa8.79□□□□□ -1
CCDC3-202ENST00000378839 M0R2N4 97 aa8.78□□□□□ -1
CCDC3-202ENST00000378839 C1orf43Q9BWL3 253 aa8.78□□□□□ -1
CCDC3-202ENST00000378839 DNAH10Q8IVF4 4471 aa8.78□□□□□ -1
CCDC3-202ENST00000378839 MRAPQ8TCY5 172 aa8.78□□□□□ -1
CCDC3-202ENST00000378839 LINC00588Q9Y4M8 146 aa8.78□□□□□ -1
CCDC3-202ENST00000378839 SNURFQ9Y675 71 aa8.78□□□□□ -1
CCDC3-202ENST00000378839 NDUFC2-KCTD14E9PQ53 114 aa8.77□□□□□ -1.01
CCDC3-202ENST00000378839 K7EIL1 84 aa8.77□□□□□ -1.01
CCDC3-202ENST00000378839 DNAH10OSP0CZ25 163 aa8.77□□□□□ -1.01
CCDC3-202ENST00000378839 KRTAP21-3Q3LHN1 58 aa8.77□□□□□ -1.01
CCDC3-202ENST00000378839 Q6ZQY7 126 aa8.76□□□□□ -1.01
CCDC3-202ENST00000378839 COL7A1Q02388 2944 aa8.76□□□□□ -1.01
CCDC3-202ENST00000378839 ZNF73O43830 326 aaPredicted RBP8.76□□□□□ -1.01
CCDC3-202ENST00000378839 C4orf48Q5BLP8 95 aa8.75□□□□□ -1.01
CCDC3-202ENST00000378839 TM2D3Q9BRN9 247 aa8.75□□□□□ -1.01
CCDC3-202ENST00000378839 DNAH9Q9NYC9 4486 aa8.75□□□□□ -1.01
CCDC3-202ENST00000378839 JMJD7-PLA2G4BH0Y9G9 81 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms