RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 C20orf197Q8N268 126 aa14.37□□□□□ -0.11
UPF3A-202ENST00000375299 MUC7Q8TAX7 377 aa14.36□□□□□ -0.11
UPF3A-202ENST00000375299 M0R2N4 97 aa14.35□□□□□ -0.11
UPF3A-202ENST00000375299 BCE1O60756 84 aa14.34□□□□□ -0.11
UPF3A-202ENST00000375299 C10orf25Q5T742 122 aa14.34□□□□□ -0.11
UPF3A-202ENST00000375299 UNQ6190/PRO20217Q6UXQ8 127 aa14.34□□□□□ -0.11
UPF3A-202ENST00000375299 IGLV6-57P01721 117 aa14.33□□□□□ -0.11
UPF3A-202ENST00000375299 LINC01547P58512 204 aaPredicted RBP14.33□□□□□ -0.11
UPF3A-202ENST00000375299 SPAG11BQ08648 103 aa14.33□□□□□ -0.11
UPF3A-202ENST00000375299 ITPR2Q14571 2701 aa14.33□□□□□ -0.12
UPF3A-202ENST00000375299 LYRM9A8MSI8 78 aa14.32□□□□□ -0.12
UPF3A-202ENST00000375299 Q6ZVQ6 151 aa14.32□□□□□ -0.12
UPF3A-202ENST00000375299 TRAV7A0A075B6U4 112 aa14.32□□□□□ -0.12
UPF3A-202ENST00000375299 LINC00482Q8N8I6 264 aa14.31□□□□□ -0.12
UPF3A-202ENST00000375299 Q6ZQY7 126 aa14.31□□□□□ -0.12
UPF3A-202ENST00000375299 A0A0J9YWU9 116 aa14.3□□□□□ -0.12
UPF3A-202ENST00000375299 IGHV4-30-4P0DP06 118 aa14.3□□□□□ -0.12
UPF3A-202ENST00000375299 HAMPP81172 84 aa14.3□□□□□ -0.12
UPF3A-202ENST00000375299 Q5XG85 94 aa14.3□□□□□ -0.12
UPF3A-202ENST00000375299 FN1P02751 2386 aaKnown RBP14.29□□□□□ -0.12
UPF3A-202ENST00000375299 FAM236DA0A1B0GTK5 79 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 H3BQ85 93 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 FAM236CP0DP71 79 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 C9orf66Q5T8R8 295 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 PDE6GP18545 87 aa14.29□□□□□ -0.12
UPF3A-202ENST00000375299 CYSRT1A8MQ03 144 aa14.28□□□□□ -0.12
UPF3A-202ENST00000375299 KRTAP10-3P60369 221 aa14.28□□□□□ -0.12
UPF3A-202ENST00000375299 SPATA3Q8NHX4 192 aa14.28□□□□□ -0.12
UPF3A-202ENST00000375299 C4orf26Q17RF5 130 aa14.26□□□□□ -0.13
UPF3A-202ENST00000375299 CXCL6P80162 114 aa14.25□□□□□ -0.13
UPF3A-202ENST00000375299 H7BZZ5 65 aa14.25□□□□□ -0.13
UPF3A-202ENST00000375299 DEFB4AO15263 64 aa14.25□□□□□ -0.13
UPF3A-202ENST00000375299 TRAV10A0A0B4J240 114 aa14.24□□□□□ -0.13
UPF3A-202ENST00000375299 DIRC1Q969H9 104 aa14.24□□□□□ -0.13
UPF3A-202ENST00000375299 SMR3AQ99954 134 aa14.23□□□□□ -0.13
UPF3A-202ENST00000375299 DAD1P61803 113 aa14.22□□□□□ -0.13
UPF3A-202ENST00000375299 GVQW2A0A096LPI5 108 aaPredicted RBP14.22□□□□□ -0.13
UPF3A-202ENST00000375299 KLKP1Q107X0 134 aa14.22□□□□□ -0.13
UPF3A-202ENST00000375299 DEFB135Q30KP9 77 aa14.2□□□□□ -0.14
UPF3A-202ENST00000375299 WIPF1O43516 503 aa14.2□□□□□ -0.14
UPF3A-202ENST00000375299 HRCT1Q6UXD1 115 aa14.2□□□□□ -0.14
UPF3A-202ENST00000375299 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.2□□□□□ -0.14
UPF3A-202ENST00000375299 TRBV7-4A0A0J9YYF1 115 aa14.19□□□□□ -0.14
UPF3A-202ENST00000375299 LELP1Q5T871 98 aa14.19□□□□□ -0.14
UPF3A-202ENST00000375299 UNC79Q9P2D8 2635 aa14.19□□□□□ -0.14
UPF3A-202ENST00000375299 EPM2AB3EWF7 344 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 PRR34Q9NV39 138 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 C6orf48Q9UBA6 75 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 SERP1Q9Y6X1 66 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 KLK12Q9UKR0 248 aa14.18□□□□□ -0.14
UPF3A-202ENST00000375299 GCN1Q92616 2671 aaKnown RBP14.17□□□□□ -0.14
UPF3A-202ENST00000375299 COX7BP24311 80 aa14.17□□□□□ -0.14
UPF3A-202ENST00000375299 J3QKU1 62 aa14.17□□□□□ -0.14
UPF3A-202ENST00000375299 ZNF73O43830 326 aaPredicted RBP14.17□□□□□ -0.14
UPF3A-202ENST00000375299 XAGE1AQ9HD64 81 aa14.17□□□□□ -0.14
UPF3A-202ENST00000375299 CELA1Q9UNI1 258 aa14.16□□□□□ -0.14
UPF3A-202ENST00000375299 NBEAL2Q6ZNJ1 2754 aa14.16□□□□□ -0.14
UPF3A-202ENST00000375299 ELOF1P60002 83 aaKnown RBP14.15□□□□□ -0.14
UPF3A-202ENST00000375299 SNURFQ9Y675 71 aa14.15□□□□□ -0.14
UPF3A-202ENST00000375299 HIVEP2P31629 2446 aa14.15□□□□□ -0.14
UPF3A-202ENST00000375299 RMI2Q96E14 147 aa14.15□□□□□ -0.14
UPF3A-202ENST00000375299 HELZ2Q9BYK8 2649 aaKnown RBP14.14□□□□□ -0.15
UPF3A-202ENST00000375299 VWFP04275 2813 aa14.13□□□□□ -0.15
UPF3A-202ENST00000375299 SCXQ7RTU7 201 aa14.13□□□□□ -0.15
UPF3A-202ENST00000375299 TRBV7-6A0A0J9YX20 115 aa14.12□□□□□ -0.15
UPF3A-202ENST00000375299 HTN3P15516 51 aa14.11□□□□□ -0.15
UPF3A-202ENST00000375299 APOC4P55056 127 aa14.11□□□□□ -0.15
UPF3A-202ENST00000375299 Q8NAQ8 132 aa14.1□□□□□ -0.15
UPF3A-202ENST00000375299 FASNP49327 2511 aaKnown RBP14.1□□□□□ -0.15
UPF3A-202ENST00000375299 F8WEM9 126 aa14.1□□□□□ -0.15
UPF3A-202ENST00000375299 TM2D3Q9BRN9 247 aa14.1□□□□□ -0.15
UPF3A-202ENST00000375299 VPREB1P12018 145 aa14.08□□□□□ -0.16
UPF3A-202ENST00000375299 MIFP14174 115 aa14.07□□□□□ -0.16
UPF3A-202ENST00000375299 SPART-AS1P0CW21 52 aa14.06□□□□□ -0.16
UPF3A-202ENST00000375299 NDUFC1O43677 76 aa14.05□□□□□ -0.16
UPF3A-202ENST00000375299 M0R378 163 aa14.04□□□□□ -0.16
UPF3A-202ENST00000375299 CAMK2N2Q96S95 79 aa14.04□□□□□ -0.16
UPF3A-202ENST00000375299 NREPQ16612 68 aa14.03□□□□□ -0.16
UPF3A-202ENST00000375299 HIGD2BQ4VC39 106 aa14.03□□□□□ -0.16
UPF3A-202ENST00000375299 LINC00528Q8N1L1 170 aa14.03□□□□□ -0.16
UPF3A-202ENST00000375299 EGFEM1PQ0D2K5 195 aa14.01□□□□□ -0.17
UPF3A-202ENST00000375299 BPY2O14599 106 aa14□□□□□ -0.17
UPF3A-202ENST00000375299 SMIM26A0A096LP01 95 aa13.98□□□□□ -0.17
UPF3A-202ENST00000375299 ATP5EP56381 51 aaPredicted RBP13.98□□□□□ -0.17
UPF3A-202ENST00000375299 Q6ZRU5 148 aa13.98□□□□□ -0.17
UPF3A-202ENST00000375299 TENM1Q9UKZ4 2725 aa13.98□□□□□ -0.17
UPF3A-202ENST00000375299 OTOGQ6ZRI0 2925 aa13.97□□□□□ -0.17
UPF3A-202ENST00000375299 INAFM1C9JVW0 142 aa13.97□□□□□ -0.17
UPF3A-202ENST00000375299 TMEM254Q8TBM7 123 aa13.97□□□□□ -0.17
UPF3A-202ENST00000375299 ERC2-IT1O76042 136 aa13.96□□□□□ -0.17
UPF3A-202ENST00000375299 IGKV4-1P06312 121 aa13.96□□□□□ -0.17
UPF3A-202ENST00000375299 KRTAP26-1Q6PEX3 210 aa13.95□□□□□ -0.18
UPF3A-202ENST00000375299 FP248Q71RG6 208 aaPredicted RBP13.95□□□□□ -0.18
UPF3A-202ENST00000375299 Q8N9L7 120 aa13.95□□□□□ -0.18
UPF3A-202ENST00000375299 WFDC10BQ8IUB3 73 aa13.94□□□□□ -0.18
UPF3A-202ENST00000375299 C15orf56Q8N910 161 aa13.93□□□□□ -0.18
UPF3A-202ENST00000375299 MRAPQ8TCY5 172 aa13.91□□□□□ -0.18
UPF3A-202ENST00000375299 HECTD1Q9ULT8 2610 aa13.91□□□□□ -0.18
UPF3A-202ENST00000375299 NSD1Q96L73 2696 aaPredicted RBP13.91□□□□□ -0.18
UPF3A-202ENST00000375299 OCR1Q9BZK8 76 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms