RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 C2orf91Q6ZV80 131 aa11.35□□□□□ -0.59
SMARCA4-201ENST00000344626 NTM-AS1Q6ZSK4 140 aa11.35□□□□□ -0.59
SMARCA4-201ENST00000344626 HRCT1Q6UXD1 115 aa11.35□□□□□ -0.59
SMARCA4-201ENST00000344626 LST1O00453 97 aa11.34□□□□□ -0.59
SMARCA4-201ENST00000344626 LINC00588Q9Y4M8 146 aa11.34□□□□□ -0.59
SMARCA4-201ENST00000344626 ATP5EP2Q5VTU8 51 aa11.33□□□□□ -0.6
SMARCA4-201ENST00000344626 C19orf73Q9NVV2 129 aa11.33□□□□□ -0.6
SMARCA4-201ENST00000344626 FAM229AH3BQW9 127 aa11.33□□□□□ -0.6
SMARCA4-201ENST00000344626 IGKV4-1P06312 121 aa11.33□□□□□ -0.6
SMARCA4-201ENST00000344626 A0A096LNJ9 63 aa11.32□□□□□ -0.6
SMARCA4-201ENST00000344626 NDUFV3P56181 108 aaKnown RBP11.32□□□□□ -0.6
SMARCA4-201ENST00000344626 LAMA1P25391 3075 aa11.31□□□□□ -0.6
SMARCA4-201ENST00000344626 TEX49A0A1B0GTD5 131 aa11.31□□□□□ -0.6
SMARCA4-201ENST00000344626 TSPEAR-AS2P59090 65 aa11.31□□□□□ -0.6
SMARCA4-201ENST00000344626 ITPR1Q14643 2758 aa11.31□□□□□ -0.6
SMARCA4-201ENST00000344626 LINC01546A6NGU7 62 aa11.3□□□□□ -0.6
SMARCA4-201ENST00000344626 IGHV3OR16-9A0A0B4J2B5 98 aa11.29□□□□□ -0.6
SMARCA4-201ENST00000344626 A8MTW9 85 aa11.28□□□□□ -0.6
SMARCA4-201ENST00000344626 Q6JHZ5 121 aa11.28□□□□□ -0.6
SMARCA4-201ENST00000344626 FAM236AA0A1B0GUQ0 79 aa11.28□□□□□ -0.6
SMARCA4-201ENST00000344626 FAM236BA0A1B0GV22 79 aa11.28□□□□□ -0.6
SMARCA4-201ENST00000344626 CELSR3Q9NYQ7 3312 aa11.28□□□□□ -0.6
SMARCA4-201ENST00000344626 PRR3P79522 188 aaKnown RBP11.27□□□□□ -0.61
SMARCA4-201ENST00000344626 CSNK1G2-AS1Q8NCQ2 148 aa11.27□□□□□ -0.61
SMARCA4-201ENST00000344626 CIRBP-AS1Q8TBR5 109 aa11.27□□□□□ -0.61
SMARCA4-201ENST00000344626 Q8N814 137 aa11.26□□□□□ -0.61
SMARCA4-201ENST00000344626 BOD1L1Q8NFC6 3051 aa11.26□□□□□ -0.61
SMARCA4-201ENST00000344626 C22orf24Q9Y442 160 aa11.26□□□□□ -0.61
SMARCA4-201ENST00000344626 ADAMTSL4-AS1Q5T5F5 129 aa11.26□□□□□ -0.61
SMARCA4-201ENST00000344626 IGLV5-39A0A0G2JS06 123 aa11.25□□□□□ -0.61
SMARCA4-201ENST00000344626 XGP55808 180 aa11.25□□□□□ -0.61
SMARCA4-201ENST00000344626 TM2D3Q9BRN9 247 aa11.25□□□□□ -0.61
SMARCA4-201ENST00000344626 Q9UF83 564 aa11.25□□□□□ -0.61
SMARCA4-201ENST00000344626 HIVEP1P15822 2718 aa11.24□□□□□ -0.61
SMARCA4-201ENST00000344626 Q8N3U1 123 aa11.23□□□□□ -0.61
SMARCA4-201ENST00000344626 RTL8CO15255 209 aa11.23□□□□□ -0.61
SMARCA4-201ENST00000344626 DNAH10OSP0CZ25 163 aa11.23□□□□□ -0.61
SMARCA4-201ENST00000344626 SCXQ7RTU7 201 aa11.22□□□□□ -0.61
SMARCA4-201ENST00000344626 Q9BRP9 147 aa11.22□□□□□ -0.61
SMARCA4-201ENST00000344626 STAB2Q8WWQ8 2551 aa11.21□□□□□ -0.61
SMARCA4-201ENST00000344626 TMEM258P61165 79 aa11.2□□□□□ -0.62
SMARCA4-201ENST00000344626 TENM4Q6N022 2769 aa11.2□□□□□ -0.62
SMARCA4-201ENST00000344626 CASC2Q6XLA1 102 aa11.2□□□□□ -0.62
SMARCA4-201ENST00000344626 EYSQ5T1H1 3165 aa11.2□□□□□ -0.62
SMARCA4-201ENST00000344626 ENHOQ6UWT2 76 aa11.19□□□□□ -0.62
SMARCA4-201ENST00000344626 IGLV5-45A0A087WSX0 123 aa11.18□□□□□ -0.62
SMARCA4-201ENST00000344626 ZZEF1O43149 2961 aa11.18□□□□□ -0.62
SMARCA4-201ENST00000344626 C6orf48Q9UBA6 75 aa11.18□□□□□ -0.62
SMARCA4-201ENST00000344626 CR1P17927 2039 aa11.18□□□□□ -0.62
SMARCA4-201ENST00000344626 J3QL48 77 aa11.17□□□□□ -0.62
SMARCA4-201ENST00000344626 SDIM1Q6ZPB5 146 aa11.17□□□□□ -0.62
SMARCA4-201ENST00000344626 LIMD2Q9BT23 127 aa11.16□□□□□ -0.62
SMARCA4-201ENST00000344626 FREM2Q5SZK8 3169 aa11.15□□□□□ -0.62
SMARCA4-201ENST00000344626 PRLHP81277 87 aa11.15□□□□□ -0.62
SMARCA4-201ENST00000344626 GVQW2A0A096LPI5 108 aaPredicted RBP11.14□□□□□ -0.63
SMARCA4-201ENST00000344626 SMCR5Q8TEV8 140 aa11.14□□□□□ -0.63
SMARCA4-201ENST00000344626 SEC61GP60059 68 aa11.14□□□□□ -0.63
SMARCA4-201ENST00000344626 A0A087WYN8 130 aa11.13□□□□□ -0.63
SMARCA4-201ENST00000344626 LINC00575Q6W349 94 aa11.13□□□□□ -0.63
SMARCA4-201ENST00000344626 KALRNO60229 2985 aa11.13□□□□□ -0.63
SMARCA4-201ENST00000344626 LINC00167Q96N53 147 aa11.13□□□□□ -0.63
SMARCA4-201ENST00000344626 WFDC13Q8IUB5 93 aa11.12□□□□□ -0.63
SMARCA4-201ENST00000344626 GIG44P09565 113 aaPredicted RBP11.11□□□□□ -0.63
SMARCA4-201ENST00000344626 NBEAQ8NFP9 2946 aa11.1□□□□□ -0.63
SMARCA4-201ENST00000344626 Q6ZRP5 223 aa11.1□□□□□ -0.63
SMARCA4-201ENST00000344626 DMXL1Q9Y485 3027 aa11.09□□□□□ -0.63
SMARCA4-201ENST00000344626 LINC00612Q8N6U2 182 aa11.09□□□□□ -0.63
SMARCA4-201ENST00000344626 LINC00337Q8N6G1 96 aa11.08□□□□□ -0.63
SMARCA4-201ENST00000344626 CHTF8P0CG12 524 aa11.08□□□□□ -0.64
SMARCA4-201ENST00000344626 J3KT08 172 aa11.07□□□□□ -0.64
SMARCA4-201ENST00000344626 PLA2G1BP04054 148 aaKnown RBP11.07□□□□□ -0.64
SMARCA4-201ENST00000344626 FAM19A3Q7Z5A8 133 aa11.07□□□□□ -0.64
SMARCA4-201ENST00000344626 SMR3BP02814 79 aaPredicted RBP11.06□□□□□ -0.64
SMARCA4-201ENST00000344626 TRBV7-6A0A0J9YX20 115 aa11.05□□□□□ -0.64
SMARCA4-201ENST00000344626 PHF5AQ7RTV0 110 aaKnown RBP11.03□□□□□ -0.64
SMARCA4-201ENST00000344626 IMUPQ9GZP8 106 aa11.03□□□□□ -0.64
SMARCA4-201ENST00000344626 A0A087WSZ3 146 aa11.03□□□□□ -0.64
SMARCA4-201ENST00000344626 LINC00336Q6ZUF6 198 aa11.02□□□□□ -0.65
SMARCA4-201ENST00000344626 IGHV6-1A0A0B4J1U7 121 aa11.01□□□□□ -0.65
SMARCA4-201ENST00000344626 B5MCH6 92 aa11.01□□□□□ -0.65
SMARCA4-201ENST00000344626 CASC10Q5T4H9 136 aa11.01□□□□□ -0.65
SMARCA4-201ENST00000344626 APLNQ9ULZ1 77 aa11.01□□□□□ -0.65
SMARCA4-201ENST00000344626 KMT2BQ9UMN6 2715 aaPredicted RBP11.01□□□□□ -0.65
SMARCA4-201ENST00000344626 CRYBG3Q68DQ2 2970 aa11□□□□□ -0.65
SMARCA4-201ENST00000344626 LINC00476Q8WZB0 136 aa11□□□□□ -0.65
SMARCA4-201ENST00000344626 CRYGAP11844 174 aa11□□□□□ -0.65
SMARCA4-201ENST00000344626 NBEAL2Q6ZNJ1 2754 aa10.99□□□□□ -0.65
SMARCA4-201ENST00000344626 MT-ATP8P03928 68 aa10.99□□□□□ -0.65
SMARCA4-201ENST00000344626 UTP20O75691 2785 aaKnown RBP10.99□□□□□ -0.65
SMARCA4-201ENST00000344626 ADGRG4Q8IZF6 3080 aa10.99□□□□□ -0.65
SMARCA4-201ENST00000344626 FAM240AA0A1B0GVK7 77 aa10.99□□□□□ -0.65
SMARCA4-201ENST00000344626 C20orf197Q8N268 126 aa10.99□□□□□ -0.65
SMARCA4-201ENST00000344626 PRR34Q9NV39 138 aa10.98□□□□□ -0.65
SMARCA4-201ENST00000344626 RPL37AP61513 92 aaKnown RBP10.98□□□□□ -0.65
SMARCA4-201ENST00000344626 C5orf47Q569G3 176 aa10.98□□□□□ -0.65
SMARCA4-201ENST00000344626 A0A087WTM6 91 aa10.97□□□□□ -0.65
SMARCA4-201ENST00000344626 APCP25054 2843 aa10.96□□□□□ -0.65
SMARCA4-201ENST00000344626 BCE1O60756 84 aa10.96□□□□□ -0.66
SMARCA4-201ENST00000344626 ELOF1P60002 83 aaKnown RBP10.96□□□□□ -0.66
SMARCA4-201ENST00000344626 WIPF1O43516 503 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 149.1 ms