RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SDIM1Q6ZPB5 146 aa13.08□□□□□ -0.31
COL9A3-201ENST00000343916 Q6ZTC4 211 aa13.08□□□□□ -0.31
COL9A3-201ENST00000343916 WFDC10BQ8IUB3 73 aa13.07□□□□□ -0.32
COL9A3-201ENST00000343916 KLK5Q9Y337 293 aaPredicted RBP13.07□□□□□ -0.32
COL9A3-201ENST00000343916 KPRPQ5T749 579 aaPredicted RBP13.07□□□□□ -0.32
COL9A3-201ENST00000343916 NCR3O14931 201 aa13.06□□□□□ -0.32
COL9A3-201ENST00000343916 C14orf132Q9NPU4 83 aa13.06□□□□□ -0.32
COL9A3-201ENST00000343916 MAST4O15021 2626 aa13.05□□□□□ -0.32
COL9A3-201ENST00000343916 NDUFC2O95298 119 aa13.05□□□□□ -0.32
COL9A3-201ENST00000343916 C9orf153Q5TBE3 101 aa13.02□□□□□ -0.32
COL9A3-201ENST00000343916 TMEM126AQ9H061 195 aa13.02□□□□□ -0.32
COL9A3-201ENST00000343916 EGFEM1PQ0D2K5 195 aa13.01□□□□□ -0.33
COL9A3-201ENST00000343916 C3orf22Q8N5N4 141 aa13.01□□□□□ -0.33
COL9A3-201ENST00000343916 NOTCH1P46531 2555 aa13.01□□□□□ -0.33
COL9A3-201ENST00000343916 A0A0J9YWU9 116 aa13□□□□□ -0.33
COL9A3-201ENST00000343916 C6orf99Q4VX62 202 aa12.98□□□□□ -0.33
COL9A3-201ENST00000343916 S100A7L2Q5SY68 101 aa12.98□□□□□ -0.33
COL9A3-201ENST00000343916 CMYA5Q8N3K9 4069 aa12.98□□□□□ -0.33
COL9A3-201ENST00000343916 IGKV3D-7A0A0C4DH55 119 aa12.98□□□□□ -0.33
COL9A3-201ENST00000343916 HIGD2BQ4VC39 106 aa12.98□□□□□ -0.33
COL9A3-201ENST00000343916 C6orf48Q9UBA6 75 aa12.98□□□□□ -0.33
COL9A3-201ENST00000343916 ESRGQ1W209 222 aa12.97□□□□□ -0.33
COL9A3-201ENST00000343916 ORMDL1Q9P0S3 153 aa12.97□□□□□ -0.33
COL9A3-201ENST00000343916 H3BNG1 76 aa12.97□□□□□ -0.33
COL9A3-201ENST00000343916 UQCRQO14949 82 aa12.97□□□□□ -0.33
COL9A3-201ENST00000343916 Q8N814 137 aa12.96□□□□□ -0.33
COL9A3-201ENST00000343916 XAGE1AQ9HD64 81 aa12.96□□□□□ -0.33
COL9A3-201ENST00000343916 LINC00846Q9NV44 126 aa12.96□□□□□ -0.33
COL9A3-201ENST00000343916 RPL18AQ02543 176 aaKnown RBP12.96□□□□□ -0.34
COL9A3-201ENST00000343916 OBSCN-AS1Q96MR7 158 aa12.94□□□□□ -0.34
COL9A3-201ENST00000343916 DEFB131BA0A096LNP1 70 aa12.93□□□□□ -0.34
COL9A3-201ENST00000343916 KRTAP26-1Q6PEX3 210 aa12.93□□□□□ -0.34
COL9A3-201ENST00000343916 COL6A5A8TX70 2615 aa12.92□□□□□ -0.34
COL9A3-201ENST00000343916 GVQW2A0A096LPI5 108 aaPredicted RBP12.91□□□□□ -0.34
COL9A3-201ENST00000343916 ZNF561-AS1K7EIQ3 104 aa12.91□□□□□ -0.34
COL9A3-201ENST00000343916 COX7CP15954 63 aa12.91□□□□□ -0.34
COL9A3-201ENST00000343916 HIST1H4AP62805 103 aaKnown RBP12.91□□□□□ -0.34
COL9A3-201ENST00000343916 C11orf45Q8TAV5 145 aa12.91□□□□□ -0.34
COL9A3-201ENST00000343916 A0A087WVE0 104 aa12.91□□□□□ -0.34
COL9A3-201ENST00000343916 PRB2P02812 416 aaPredicted RBP12.91□□□□□ -0.34
COL9A3-201ENST00000343916 C2orf48Q96LS8 159 aa12.91□□□□□ -0.34
COL9A3-201ENST00000343916 LINC00167Q96N53 147 aa12.91□□□□□ -0.34
COL9A3-201ENST00000343916 CAMK2N2Q96S95 79 aa12.9□□□□□ -0.34
COL9A3-201ENST00000343916 MUC7Q8TAX7 377 aa12.89□□□□□ -0.35
COL9A3-201ENST00000343916 A0A1B0GX51 115 aa12.88□□□□□ -0.35
COL9A3-201ENST00000343916 ATOX1O00244 68 aa12.88□□□□□ -0.35
COL9A3-201ENST00000343916 IGLV6-57P01721 117 aa12.88□□□□□ -0.35
COL9A3-201ENST00000343916 Q6JHZ5 121 aa12.88□□□□□ -0.35
COL9A3-201ENST00000343916 C15orf56Q8N910 161 aa12.88□□□□□ -0.35
COL9A3-201ENST00000343916 LINC00575Q6W349 94 aa12.87□□□□□ -0.35
COL9A3-201ENST00000343916 Q6ZRU5 148 aa12.87□□□□□ -0.35
COL9A3-201ENST00000343916 TRBV10-3A0A0K0K1G6 114 aa12.86□□□□□ -0.35
COL9A3-201ENST00000343916 IGKV2D-24A0A075B6R9 120 aa12.85□□□□□ -0.35
COL9A3-201ENST00000343916 hADV29S1A0JD25 119 aa12.85□□□□□ -0.35
COL9A3-201ENST00000343916 TMEM256-PLSCR3K7ERE1 68 aa12.85□□□□□ -0.35
COL9A3-201ENST00000343916 C1orf43Q9BWL3 253 aa12.85□□□□□ -0.35
COL9A3-201ENST00000343916 NBEAL1Q6ZS30 2694 aa12.85□□□□□ -0.35
COL9A3-201ENST00000343916 CYSTM1Q9H1C7 97 aa12.84□□□□□ -0.35
COL9A3-201ENST00000343916 LINC01556Q5JQF7 62 aa12.83□□□□□ -0.36
COL9A3-201ENST00000343916 DNAH3Q8TD57 4116 aa12.82□□□□□ -0.36
COL9A3-201ENST00000343916 LOC107984640A0A0U1RRK4 108 aa12.82□□□□□ -0.36
COL9A3-201ENST00000343916 CCKP06307 115 aa12.82□□□□□ -0.36
COL9A3-201ENST00000343916 CRYGAP11844 174 aa12.82□□□□□ -0.36
COL9A3-201ENST00000343916 TRAV23DV6A0A075B6W5 121 aa12.81□□□□□ -0.36
COL9A3-201ENST00000343916 JMJD7-PLA2G4BH0Y9G9 81 aa12.8□□□□□ -0.36
COL9A3-201ENST00000343916 MRAPQ8TCY5 172 aa12.8□□□□□ -0.36
COL9A3-201ENST00000343916 VPREB1P12018 145 aa12.79□□□□□ -0.36
COL9A3-201ENST00000343916 USP17L23D6RBM5 183 aa12.78□□□□□ -0.36
COL9A3-201ENST00000343916 NDUFC2-KCTD14E9PQ53 114 aa12.77□□□□□ -0.37
COL9A3-201ENST00000343916 Q6ZQY7 126 aa12.77□□□□□ -0.37
COL9A3-201ENST00000343916 Q6ZRP5 223 aa12.77□□□□□ -0.37
COL9A3-201ENST00000343916 DIRC1Q969H9 104 aa12.77□□□□□ -0.37
COL9A3-201ENST00000343916 ZNF73O43830 326 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-201ENST00000343916 SERP2Q8N6R1 65 aa12.76□□□□□ -0.37
COL9A3-201ENST00000343916 DNAH10OSP0CZ25 163 aa12.74□□□□□ -0.37
COL9A3-201ENST00000343916 LAMTOR3Q9UHA4 124 aa12.73□□□□□ -0.37
COL9A3-201ENST00000343916 LINC00588Q9Y4M8 146 aa12.73□□□□□ -0.37
COL9A3-201ENST00000343916 SYCNQ0VAF6 134 aa12.72□□□□□ -0.37
COL9A3-201ENST00000343916 UPK3BQ9BT76 320 aa12.72□□□□□ -0.37
COL9A3-201ENST00000343916 TRAV10A0A0B4J240 114 aa12.71□□□□□ -0.37
COL9A3-201ENST00000343916 MGAM2Q2M2H8 2515 aa12.71□□□□□ -0.37
COL9A3-201ENST00000343916 J3KT08 172 aa12.71□□□□□ -0.37
COL9A3-201ENST00000343916 FAM19A1Q7Z5A9 133 aa12.71□□□□□ -0.37
COL9A3-201ENST00000343916 K7EIL1 84 aa12.7□□□□□ -0.38
COL9A3-201ENST00000343916 M0R378 163 aa12.7□□□□□ -0.38
COL9A3-201ENST00000343916 COX7BP24311 80 aa12.7□□□□□ -0.38
COL9A3-201ENST00000343916 RBM3P98179 157 aaKnown RBP12.7□□□□□ -0.38
COL9A3-201ENST00000343916 ELOF1P60002 83 aaKnown RBP12.69□□□□□ -0.38
COL9A3-201ENST00000343916 CASC10Q5T4H9 136 aa12.69□□□□□ -0.38
COL9A3-201ENST00000343916 TM2D3Q9BRN9 247 aa12.69□□□□□ -0.38
COL9A3-201ENST00000343916 HUWE1Q7Z6Z7 4374 aaKnown RBP12.68□□□□□ -0.38
COL9A3-201ENST00000343916 M0R2N4 97 aa12.67□□□□□ -0.38
COL9A3-201ENST00000343916 Q6ZQT0 140 aa12.66□□□□□ -0.38
COL9A3-201ENST00000343916 GHRHP01286 108 aa12.66□□□□□ -0.38
COL9A3-201ENST00000343916 MDFIQ99750 246 aa12.66□□□□□ -0.38
COL9A3-201ENST00000343916 SERTAD4-AS1Q5TG53 156 aa12.65□□□□□ -0.38
COL9A3-201ENST00000343916 FAM19A5Q7Z5A7 132 aaPredicted RBP12.65□□□□□ -0.38
COL9A3-201ENST00000343916 UBL5Q9BZL1 73 aa12.65□□□□□ -0.38
COL9A3-201ENST00000343916 ATP5EP2Q5VTU8 51 aa12.64□□□□□ -0.39
COL9A3-201ENST00000343916 TMEM258P61165 79 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms