RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 Q1T7F1 81 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 MUC21Q5SSG8 566 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 C10orf55Q5SWW7 151 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 PPP1R1CQ8WVI7 109 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 TMEM141Q96I45 108 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 AMELXQ99217 191 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 ARL6Q9H0F7 186 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 KCNK15Q9H427 330 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 C22orf24Q9Y442 160 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 TACC2O95359 2948 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 SNURFLB1AK76 121 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 GYPEP15421 78 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 KRTAP10-12P60413 245 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 PAPPA-AS1Q5QFB9 102 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 Q6JHZ5 121 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 RNASEKQ6P5S7 137 aaKnown RBP0.79□□□□□ -2.28
LINC00643-201ENST00000334389 Q6ZVH6 145 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 TEN1Q86WV5 123 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 AP1S3Q96PC3 154 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 LIMD2Q9BT23 127 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 DERL1Q9BUN8 251 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 EIF5A2Q9GZV4 153 aaKnown RBP0.79□□□□□ -2.28
LINC00643-201ENST00000334389 CYP4F30PQ9H0H9 118 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 DPH3P1Q9H4G8 78 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 HSPB8Q9UJY1 196 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 SERP1Q9Y6X1 66 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 IGKV2-40A0A087WW87 121 aaPredicted RBP0.79□□□□□ -2.28
LINC00643-201ENST00000334389 TRBV10-2A0A0K0K1G8 114 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 M0QY20 66 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 IGKV2D-40P01614 121 aaPredicted RBP0.79□□□□□ -2.28
LINC00643-201ENST00000334389 C3orf79P0CE67 100 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 SPRR1AP35321 89 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 LSM3P62310 102 aaKnown RBP0.79□□□□□ -2.28
LINC00643-201ENST00000334389 AKR1C1Q04828 323 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 LTC4SQ16873 150 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 RPL7L1Q6DKI1 246 aaKnown RBP0.79□□□□□ -2.28
LINC00643-201ENST00000334389 KCNIP4Q6PIL6 250 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 FAM24BQ8N5W8 94 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 SLC25A29Q8N8R3 303 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 CMTM2Q8TAZ6 248 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 SMIM2Q9BVW6 85 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 TRBV6-8A0A0A6YYG3 113 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV3-72A0A0B4J1Y9 119 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 IGKV3D-20A0A0C4DH25 116 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE12JA6NER3 117 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 SDHAF1A6NFY7 115 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 A6NIN4 97 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 A8MWL6 223 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 J3QR89 54 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 K7EQZ3 153 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 NDUFC1O43677 76 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE7O76087 117 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE12FP0CL80 117 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE12GP0CL81 117 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE12IP0CL82 117 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 COX7CP15954 63 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 CRIP1P50238 77 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 FXYD4P59646 89 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 UBE2G1P62253 170 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 GAGE4Q13068 117 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 RIGQ13278 110 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 SPATA45Q537H7 98 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 LCE1CQ5T751 118 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 LCE1BQ5T7P3 118 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 SMIM20Q8N5G0 67 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 OR13C6PQ8NH95 151 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 DPH3Q96FX2 82 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 CYYR1Q96J86 154 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 VAMP8Q9BV40 100 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 Q9HAA7 133 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 HHLA3Q9XRX5 114 aa0.79□□□□□ -2.28
LINC00643-201ENST00000334389 IGLV7-46A0A075B6I9 117 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV3-35A0A0C4DH35 117 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 IGLV5-39A0A0G2JS06 123 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 IGIPA6NJ69 53 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 A8MUU9 505 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 SSNA1O43805 119 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 ZNF688P0C7X2 276 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 RPL28P46779 137 aaKnown RBP0.78□□□□□ -2.28
LINC00643-201ENST00000334389 HERV-K104P63124 156 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 UBE2L3P68036 154 aaKnown RBP0.78□□□□□ -2.28
LINC00643-201ENST00000334389 Q8IZM0 81 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 LINC00304Q8N9R0 145 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 FAM104AQ969W3 186 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 TTTY10Q9BZA0 68 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 TRAV12-2A0A075B6T6 113 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 FAM24AA6NFZ4 105 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 VCYO14598 125 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 SH2D1AO60880 128 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 S100A10P60903 97 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 LYZP61626 148 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 RPL36AP83881 106 aaKnown RBP0.78□□□□□ -2.28
LINC00643-201ENST00000334389 PRB3Q04118 309 aaPredicted RBP0.78□□□□□ -2.28
LINC00643-201ENST00000334389 SPANXN5Q5MJ07 72 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 LYRM7Q5U5X0 104 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 SLC25A34Q6PIV7 304 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 MIR17HGQ75NE6 70 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 WFDC13Q8IUB5 93 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 CEND1Q8N111 149 aa0.78□□□□□ -2.28
LINC00643-201ENST00000334389 NRACQ8N912 160 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms