RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 FP248Q71RG6 208 aaPredicted RBP5.21□□□□□ -1.58
LIMCH1-201ENST00000313860 TET1Q8NFU7 2136 aa5.21□□□□□ -1.58
LIMCH1-201ENST00000313860 USF3Q68DE3 2245 aa5.2□□□□□ -1.58
LIMCH1-201ENST00000313860 CHCHD7Q9BUK0 85 aa5.2□□□□□ -1.58
LIMCH1-201ENST00000313860 Q8N9P0 234 aaPredicted RBP5.2□□□□□ -1.58
LIMCH1-201ENST00000313860 CACNA1EQ15878 2313 aa5.2□□□□□ -1.58
LIMCH1-201ENST00000313860 TANC2Q9HCD6 1990 aa5.2□□□□□ -1.58
LIMCH1-201ENST00000313860 LINC00315P59091 139 aa5.19□□□□□ -1.58
LIMCH1-201ENST00000313860 Q6ZRX8 168 aa5.19□□□□□ -1.58
LIMCH1-201ENST00000313860 TMEM131Q92545 1883 aa5.19□□□□□ -1.58
LIMCH1-201ENST00000313860 IGLV1-51P01701 117 aa5.18□□□□□ -1.58
LIMCH1-201ENST00000313860 AGRNO00468 2067 aa5.18□□□□□ -1.58
LIMCH1-201ENST00000313860 IGLV1-50A0A075B6I6 118 aa5.18□□□□□ -1.58
LIMCH1-201ENST00000313860 SMCPP49901 116 aaPredicted RBP5.18□□□□□ -1.58
LIMCH1-201ENST00000313860 XIRP2A4UGR9 3374 aa5.18□□□□□ -1.58
LIMCH1-201ENST00000313860 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.18□□□□□ -1.58
LIMCH1-201ENST00000313860 ODF3BA8MYP8 253 aa5.18□□□□□ -1.58
LIMCH1-201ENST00000313860 IGLV1-44P01699 117 aa5.18□□□□□ -1.58
LIMCH1-201ENST00000313860 PRR26Q8N8Z3 221 aa5.18□□□□□ -1.58
LIMCH1-201ENST00000313860 PCDH15Q96QU1 1955 aa5.17□□□□□ -1.58
LIMCH1-201ENST00000313860 C16orf90A8MZG2 172 aa5.17□□□□□ -1.58
LIMCH1-201ENST00000313860 C11orf21Q9P2W6 132 aa5.17□□□□□ -1.58
LIMCH1-201ENST00000313860 BRWD1-AS2P59051 145 aa5.17□□□□□ -1.58
LIMCH1-201ENST00000313860 THADAQ6YHU6 1953 aa5.17□□□□□ -1.58
LIMCH1-201ENST00000313860 A0A1B0GW54 56 aa5.17□□□□□ -1.58
LIMCH1-201ENST00000313860 KIF25-AS1Q9Y6Z4 181 aa5.17□□□□□ -1.58
LIMCH1-201ENST00000313860 LOC110117498A0A087WWA1 95 aa5.16□□□□□ -1.58
LIMCH1-201ENST00000313860 IGLV1-40P01703 118 aa5.16□□□□□ -1.58
LIMCH1-201ENST00000313860 Q6ZPA2 131 aa5.16□□□□□ -1.58
LIMCH1-201ENST00000313860 PLXNB1O43157 2135 aa5.16□□□□□ -1.58
LIMCH1-201ENST00000313860 H7BZZ5 65 aa5.15□□□□□ -1.58
LIMCH1-201ENST00000313860 IGHV3OR16-9A0A0B4J2B5 98 aa5.15□□□□□ -1.58
LIMCH1-201ENST00000313860 MAP1BP46821 2468 aaKnown RBP5.15□□□□□ -1.59
LIMCH1-201ENST00000313860 HCFC1P51610 2035 aa5.15□□□□□ -1.59
LIMCH1-201ENST00000313860 C1orf229Q6ZS94 237 aaPredicted RBP5.14□□□□□ -1.59
LIMCH1-201ENST00000313860 LINC00528Q8N1L1 170 aa5.14□□□□□ -1.59
LIMCH1-201ENST00000313860 NOTCH4Q99466 2003 aa5.14□□□□□ -1.59
LIMCH1-201ENST00000313860 BRCA2P51587 3418 aa5.13□□□□□ -1.59
LIMCH1-201ENST00000313860 MUC22E2RYF6 1773 aaPredicted RBP5.13□□□□□ -1.59
LIMCH1-201ENST00000313860 LAMA2P24043 3122 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-201ENST00000313860 URB1-AS1Q96HZ7 61 aa5.13□□□□□ -1.59
LIMCH1-201ENST00000313860 HTTP42858 3142 aa5.13□□□□□ -1.59
LIMCH1-201ENST00000313860 A0A0G2JQZ4 141 aa5.12□□□□□ -1.59
LIMCH1-201ENST00000313860 A0A1W2PNM2 257 aa5.11□□□□□ -1.59
LIMCH1-201ENST00000313860 WISP2O76076 250 aa5.11□□□□□ -1.59
LIMCH1-201ENST00000313860 HRES1P13985 223 aa5.11□□□□□ -1.59
LIMCH1-201ENST00000313860 Q75L30 129 aa5.11□□□□□ -1.59
LIMCH1-201ENST00000313860 PTPRQQ9UMZ3 2332 aa5.11□□□□□ -1.59
LIMCH1-201ENST00000313860 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.11□□□□□ -1.59
LIMCH1-201ENST00000313860 ATRXP46100 2492 aa5.11□□□□□ -1.59
LIMCH1-201ENST00000313860 MALRD1Q5VYJ5 2156 aa5.11□□□□□ -1.59
LIMCH1-201ENST00000313860 KLKP1Q107X0 134 aa5.11□□□□□ -1.59
LIMCH1-201ENST00000313860 A0A1B0GVX0 72 aa5.1□□□□□ -1.59
LIMCH1-201ENST00000313860 LINC01558Q9Y6Z2 57 aa5.1□□□□□ -1.59
LIMCH1-201ENST00000313860 LAMA3Q16787 3333 aa5.1□□□□□ -1.59
LIMCH1-201ENST00000313860 OCR1Q9BZK8 76 aa5.1□□□□□ -1.59
LIMCH1-201ENST00000313860 IGLV1-47P01700 117 aa5.1□□□□□ -1.59
LIMCH1-201ENST00000313860 Q6ZSN1 163 aa5.1□□□□□ -1.59
LIMCH1-201ENST00000313860 PRR14LQ5THK1 2151 aa5.1□□□□□ -1.59
LIMCH1-201ENST00000313860 FAM186AA6NE01 2351 aa5.09□□□□□ -1.59
LIMCH1-201ENST00000313860 EXPH5Q8NEV8 1989 aa5.09□□□□□ -1.59
LIMCH1-201ENST00000313860 Q8NA96 180 aa5.09□□□□□ -1.59
LIMCH1-201ENST00000313860 LITAFQ99732 161 aa5.09□□□□□ -1.59
LIMCH1-201ENST00000313860 EP300Q09472 2414 aaPredicted RBP5.09□□□□□ -1.59
LIMCH1-201ENST00000313860 USP34Q70CQ2 3546 aa5.08□□□□□ -1.6
LIMCH1-201ENST00000313860 NOTCH3Q9UM47 2321 aa5.08□□□□□ -1.6
LIMCH1-201ENST00000313860 COL5A1P20908 1838 aaPredicted RBP5.08□□□□□ -1.6
LIMCH1-201ENST00000313860 EIF4EBP3O60516 100 aaPredicted RBP5.08□□□□□ -1.6
LIMCH1-201ENST00000313860 IGFL3Q6UXB1 125 aa5.08□□□□□ -1.6
LIMCH1-201ENST00000313860 LINC00304Q8N9R0 145 aa5.08□□□□□ -1.6
LIMCH1-201ENST00000313860 CACNA1GO43497 2377 aa5.07□□□□□ -1.6
LIMCH1-201ENST00000313860 KLLNB2CW77 178 aa5.06□□□□□ -1.6
LIMCH1-201ENST00000313860 C16orf95Q9H693 158 aa5.05□□□□□ -1.6
LIMCH1-201ENST00000313860 CEP290O15078 2479 aa5.05□□□□□ -1.6
LIMCH1-201ENST00000313860 MED13LQ71F56 2210 aa5.05□□□□□ -1.6
LIMCH1-201ENST00000313860 FAM168BA1KXE4 195 aa5.05□□□□□ -1.6
LIMCH1-201ENST00000313860 SPATA8Q6RVD6 105 aa5.05□□□□□ -1.6
LIMCH1-201ENST00000313860 IGFL1Q6UW32 110 aa5.05□□□□□ -1.6
LIMCH1-201ENST00000313860 C15orf56Q8N910 161 aa5.05□□□□□ -1.6
LIMCH1-201ENST00000313860 LINC00574Q9H8X3 128 aa5.05□□□□□ -1.6
LIMCH1-201ENST00000313860 R4GN34 69 aa5.05□□□□□ -1.6
LIMCH1-201ENST00000313860 Q6ZSA8 131 aa5.04□□□□□ -1.6
LIMCH1-201ENST00000313860 C2orf16Q68DN1 1984 aa5.04□□□□□ -1.6
LIMCH1-201ENST00000313860 SPANXA2-OT1Q8N9U9 137 aa5.04□□□□□ -1.6
LIMCH1-201ENST00000313860 TET2Q6N021 2002 aaPredicted RBP5.04□□□□□ -1.6
LIMCH1-201ENST00000313860 Q6ZR54 194 aa5.03□□□□□ -1.6
LIMCH1-201ENST00000313860 DNAH14Q0VDD8 3507 aa5.03□□□□□ -1.6
LIMCH1-201ENST00000313860 S4R3F8 94 aa5.03□□□□□ -1.6
LIMCH1-201ENST00000313860 UNC80Q8N2C7 3258 aa5.03□□□□□ -1.6
LIMCH1-201ENST00000313860 ANAPC11Q9NYG5 84 aa5.03□□□□□ -1.6
LIMCH1-201ENST00000313860 H3BNG1 76 aa5.02□□□□□ -1.61
LIMCH1-201ENST00000313860 U3KQA8 63 aa5.01□□□□□ -1.61
LIMCH1-201ENST00000313860 LRP4O75096 1905 aa5.01□□□□□ -1.61
LIMCH1-201ENST00000313860 A0A1B0GUV1 79 aa5.01□□□□□ -1.61
LIMCH1-201ENST00000313860 C10orf95Q9H7T3 257 aa5.01□□□□□ -1.61
LIMCH1-201ENST00000313860 RANBP2P49792 3224 aaKnown RBP5.01□□□□□ -1.61
LIMCH1-201ENST00000313860 CHD7Q9P2D1 2997 aa5.01□□□□□ -1.61
LIMCH1-201ENST00000313860 C19orf73Q9NVV2 129 aa5.01□□□□□ -1.61
LIMCH1-201ENST00000313860 OTOGLQ3ZCN5 2332 aa5.01□□□□□ -1.61
LIMCH1-201ENST00000313860 C5orf42Q9H799 3197 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms