RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 MUC7Q8TAX7 377 aa10.29□□□□□ -0.76
SF3B4-201ENST00000271628 SMIM11BQ8TCY0 68 aa10.29□□□□□ -0.76
SF3B4-201ENST00000271628 IMUPQ9GZP8 106 aa10.27□□□□□ -0.76
SF3B4-201ENST00000271628 C22orf24Q9Y442 160 aa10.27□□□□□ -0.76
SF3B4-201ENST00000271628 DNAL4O96015 105 aa10.27□□□□□ -0.77
SF3B4-201ENST00000271628 C1orf43Q9BWL3 253 aa10.27□□□□□ -0.77
SF3B4-201ENST00000271628 LINC00588Q9Y4M8 146 aa10.26□□□□□ -0.77
SF3B4-201ENST00000271628 KRTAP26-1Q6PEX3 210 aa10.26□□□□□ -0.77
SF3B4-201ENST00000271628 SDIM1Q6ZPB5 146 aa10.25□□□□□ -0.77
SF3B4-201ENST00000271628 LINC00643Q86TS7 51 aa10.24□□□□□ -0.77
SF3B4-201ENST00000271628 C6orf223Q8N319 242 aa10.24□□□□□ -0.77
SF3B4-201ENST00000271628 Q9HAA7 133 aa10.24□□□□□ -0.77
SF3B4-201ENST00000271628 GVQW2A0A096LPI5 108 aaPredicted RBP10.24□□□□□ -0.77
SF3B4-201ENST00000271628 ZNF561-AS1K7EIQ3 104 aa10.24□□□□□ -0.77
SF3B4-201ENST00000271628 UNQ6190/PRO20217Q6UXQ8 127 aa10.24□□□□□ -0.77
SF3B4-201ENST00000271628 COL7A1Q02388 2944 aa10.23□□□□□ -0.77
SF3B4-201ENST00000271628 DNAH9Q9NYC9 4486 aa10.23□□□□□ -0.77
SF3B4-201ENST00000271628 NDUFC2O95298 119 aa10.22□□□□□ -0.77
SF3B4-201ENST00000271628 UPK3BQ9BT76 320 aa10.22□□□□□ -0.77
SF3B4-201ENST00000271628 IGKV2D-24A0A075B6R9 120 aa10.22□□□□□ -0.77
SF3B4-201ENST00000271628 A0A087WYN8 130 aa10.22□□□□□ -0.77
SF3B4-201ENST00000271628 C9orf116Q5BN46 136 aaPredicted RBP10.22□□□□□ -0.77
SF3B4-201ENST00000271628 C10orf25Q5T742 122 aa10.21□□□□□ -0.77
SF3B4-201ENST00000271628 OR13C6PQ8NH95 151 aa10.21□□□□□ -0.77
SF3B4-201ENST00000271628 LINC00526Q96FQ7 95 aa10.21□□□□□ -0.78
SF3B4-201ENST00000271628 F8WDY8 70 aa10.19□□□□□ -0.78
SF3B4-201ENST00000271628 SMCR5Q8TEV8 140 aa10.19□□□□□ -0.78
SF3B4-201ENST00000271628 C2orf48Q96LS8 159 aa10.19□□□□□ -0.78
SF3B4-201ENST00000271628 OBSCN-AS1Q96MR7 158 aa10.19□□□□□ -0.78
SF3B4-201ENST00000271628 CAMK2N2Q96S95 79 aa10.19□□□□□ -0.78
SF3B4-201ENST00000271628 C15orf56Q8N910 161 aa10.18□□□□□ -0.78
SF3B4-201ENST00000271628 LECT2O14960 151 aa10.18□□□□□ -0.78
SF3B4-201ENST00000271628 HIGD2BQ4VC39 106 aa10.18□□□□□ -0.78
SF3B4-201ENST00000271628 GAGE2AQ6NT46 116 aa10.18□□□□□ -0.78
SF3B4-201ENST00000271628 RMI2Q96E14 147 aa10.18□□□□□ -0.78
SF3B4-201ENST00000271628 C6orf48Q9UBA6 75 aa10.18□□□□□ -0.78
SF3B4-201ENST00000271628 A0A1B0GX51 115 aa10.17□□□□□ -0.78
SF3B4-201ENST00000271628 B5MCH6 92 aa10.17□□□□□ -0.78
SF3B4-201ENST00000271628 CCDC179H3BU77 68 aa10.16□□□□□ -0.78
SF3B4-201ENST00000271628 TMEM126AQ9H061 195 aa10.15□□□□□ -0.78
SF3B4-201ENST00000271628 ORMDL1Q9P0S3 153 aa10.14□□□□□ -0.79
SF3B4-201ENST00000271628 STAB2Q8WWQ8 2551 aa10.13□□□□□ -0.79
SF3B4-201ENST00000271628 FAM236AA0A1B0GUQ0 79 aa10.13□□□□□ -0.79
SF3B4-201ENST00000271628 FAM236BA0A1B0GV22 79 aa10.13□□□□□ -0.79
SF3B4-201ENST00000271628 LINC00167Q96N53 147 aa10.13□□□□□ -0.79
SF3B4-201ENST00000271628 APLNQ9ULZ1 77 aa10.13□□□□□ -0.79
SF3B4-201ENST00000271628 Q6ZRU5 148 aa10.12□□□□□ -0.79
SF3B4-201ENST00000271628 C14orf132Q9NPU4 83 aa10.12□□□□□ -0.79
SF3B4-201ENST00000271628 C9orf129Q5T035 196 aaKnown RBP10.11□□□□□ -0.79
SF3B4-201ENST00000271628 PRR3P79522 188 aaKnown RBP10.11□□□□□ -0.79
SF3B4-201ENST00000271628 DYNC2H1Q8NCM8 4307 aaKnown RBP10.1□□□□□ -0.79
SF3B4-201ENST00000271628 SYCNQ0VAF6 134 aa10.1□□□□□ -0.79
SF3B4-201ENST00000271628 NUPR2A6NF83 97 aa10.1□□□□□ -0.79
SF3B4-201ENST00000271628 NDUFC2-KCTD14E9PQ53 114 aa10.1□□□□□ -0.79
SF3B4-201ENST00000271628 S100A7L2Q5SY68 101 aa10.1□□□□□ -0.79
SF3B4-201ENST00000271628 UBE2DNLQ8IWF7 75 aa10.1□□□□□ -0.79
SF3B4-201ENST00000271628 Q8N814 137 aa10.1□□□□□ -0.79
SF3B4-201ENST00000271628 SS18L2Q9UHA2 77 aa10.1□□□□□ -0.79
SF3B4-201ENST00000271628 DNAH1Q9P2D7 4330 aa10.09□□□□□ -0.79
SF3B4-201ENST00000271628 SLPIP03973 132 aa10.09□□□□□ -0.79
SF3B4-201ENST00000271628 JMJD7-PLA2G4BH0Y9G9 81 aa10.08□□□□□ -0.8
SF3B4-201ENST00000271628 TMEM256-PLSCR3K7ERE1 68 aa10.08□□□□□ -0.8
SF3B4-201ENST00000271628 NCR3O14931 201 aa10.08□□□□□ -0.8
SF3B4-201ENST00000271628 Q8NDZ9 215 aa10.07□□□□□ -0.8
SF3B4-201ENST00000271628 XAGE1AQ9HD64 81 aa10.06□□□□□ -0.8
SF3B4-201ENST00000271628 USP17L23D6RBM5 183 aa10.06□□□□□ -0.8
SF3B4-201ENST00000271628 CCKP06307 115 aa10.05□□□□□ -0.8
SF3B4-201ENST00000271628 LINC00846Q9NV44 126 aa10.05□□□□□ -0.8
SF3B4-201ENST00000271628 DNHD1Q96M86 4753 aa10.05□□□□□ -0.8
SF3B4-201ENST00000271628 Q6JHZ5 121 aa10.05□□□□□ -0.8
SF3B4-201ENST00000271628 LYSTQ99698 3801 aa10.04□□□□□ -0.8
SF3B4-201ENST00000271628 IGLV6-57P01721 117 aa10.04□□□□□ -0.8
SF3B4-201ENST00000271628 RPL18AQ02543 176 aaKnown RBP10.04□□□□□ -0.8
SF3B4-201ENST00000271628 CSMD3Q7Z407 3707 aa10.04□□□□□ -0.8
SF3B4-201ENST00000271628 TLX1NBP0CAT3 122 aa10.03□□□□□ -0.8
SF3B4-201ENST00000271628 HIST1H4AP62805 103 aaKnown RBP10.03□□□□□ -0.8
SF3B4-201ENST00000271628 KRTAP21-3Q3LHN1 58 aa10.03□□□□□ -0.8
SF3B4-201ENST00000271628 C6orf99Q4VX62 202 aa10.03□□□□□ -0.8
SF3B4-201ENST00000271628 Q6ZRP5 223 aa10.03□□□□□ -0.8
SF3B4-201ENST00000271628 CASC10Q5T4H9 136 aa10.02□□□□□ -0.81
SF3B4-201ENST00000271628 UQCRQO14949 82 aa10.02□□□□□ -0.81
SF3B4-201ENST00000271628 VPREB1P12018 145 aa10.01□□□□□ -0.81
SF3B4-201ENST00000271628 LINC00575Q6W349 94 aa10.01□□□□□ -0.81
SF3B4-201ENST00000271628 C3orf22Q8N5N4 141 aa10.01□□□□□ -0.81
SF3B4-201ENST00000271628 ATOX1O00244 68 aa10□□□□□ -0.81
SF3B4-201ENST00000271628 MEGF8Q7Z7M0 2845 aa10□□□□□ -0.81
SF3B4-201ENST00000271628 KRTAP1-5Q9BYS1 174 aa10□□□□□ -0.81
SF3B4-201ENST00000271628 PRKDCP78527 4128 aaKnown RBP10□□□□□ -0.81
SF3B4-201ENST00000271628 DNAH7Q8WXX0 4024 aa9.99□□□□□ -0.81
SF3B4-201ENST00000271628 M0R378 163 aa9.99□□□□□ -0.81
SF3B4-201ENST00000271628 PLECQ15149 4684 aaKnown RBP9.99□□□□□ -0.81
SF3B4-201ENST00000271628 PSCAO43653 123 aa9.98□□□□□ -0.81
SF3B4-201ENST00000271628 TRAV23DV6A0A075B6W5 121 aa9.97□□□□□ -0.81
SF3B4-201ENST00000271628 TRBV10-3A0A0K0K1G6 114 aa9.97□□□□□ -0.81
SF3B4-201ENST00000271628 hADV29S1A0JD25 119 aa9.97□□□□□ -0.81
SF3B4-201ENST00000271628 IGKV3D-7A0A0C4DH55 119 aa9.97□□□□□ -0.81
SF3B4-201ENST00000271628 H3BQ85 93 aa9.97□□□□□ -0.81
SF3B4-201ENST00000271628 COX7CP15954 63 aa9.97□□□□□ -0.81
SF3B4-201ENST00000271628 C9orf153Q5TBE3 101 aa9.96□□□□□ -0.81
SF3B4-201ENST00000271628 ATP5EP2Q5VTU8 51 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms