RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 HCP5Q6MZN7 132 aa2.02□□□□□ -2.09
CCDC54-201ENST00000261058 MED12Q93074 2177 aa2.02□□□□□ -2.09
CCDC54-201ENST00000261058 ESPL1Q14674 2120 aa2.02□□□□□ -2.09
CCDC54-201ENST00000261058 PRRC2BQ5JSZ5 2229 aaKnown RBP2.01□□□□□ -2.09
CCDC54-201ENST00000261058 CEP192Q8TEP8 1941 aa2.01□□□□□ -2.09
CCDC54-201ENST00000261058 ARFGEF3Q5TH69 2177 aa2.01□□□□□ -2.09
CCDC54-201ENST00000261058 TRGV4A0A0C4DH28 118 aa2.01□□□□□ -2.09
CCDC54-201ENST00000261058 IGKV3OR2-268A0A0C4DH90 116 aa2.01□□□□□ -2.09
CCDC54-201ENST00000261058 CPSF4LA6NMK7 179 aaKnown RBP2.01□□□□□ -2.09
CCDC54-201ENST00000261058 NDUFA4O00483 81 aa2.01□□□□□ -2.09
CCDC54-201ENST00000261058 RNASE3P12724 160 aaKnown RBP2.01□□□□□ -2.09
CCDC54-201ENST00000261058 KRTAP13-1Q8IUC0 172 aa2.01□□□□□ -2.09
CCDC54-201ENST00000261058 ZNF625Q96I27 306 aaPredicted RBP2.01□□□□□ -2.09
CCDC54-201ENST00000261058 TRIOBPQ9H2D6 2365 aa2.01□□□□□ -2.09
CCDC54-201ENST00000261058 CUL9Q8IWT3 2517 aa2.01□□□□□ -2.09
CCDC54-201ENST00000261058 HAMPP81172 84 aa2□□□□□ -2.09
CCDC54-201ENST00000261058 TFF3Q07654 80 aa2□□□□□ -2.09
CCDC54-201ENST00000261058 DEFB112Q30KQ8 113 aa2□□□□□ -2.09
CCDC54-201ENST00000261058 PATE1Q8WXA2 126 aa2□□□□□ -2.09
CCDC54-201ENST00000261058 ARHGAP5-AS1Q96IT6 56 aa2□□□□□ -2.09
CCDC54-201ENST00000261058 IAPPP10997 89 aa2□□□□□ -2.09
CCDC54-201ENST00000261058 COX17Q14061 63 aa2□□□□□ -2.09
CCDC54-201ENST00000261058 ETDCA0A1B0GVM5 59 aa1.99□□□□□ -2.09
CCDC54-201ENST00000261058 COA5Q86WW8 74 aa1.99□□□□□ -2.09
CCDC54-201ENST00000261058 BRWD1Q9NSI6 2320 aa1.98□□□□□ -2.09
CCDC54-201ENST00000261058 SPAG17Q6Q759 2223 aa1.98□□□□□ -2.09
CCDC54-201ENST00000261058 NCR3O14931 201 aa1.98□□□□□ -2.09
CCDC54-201ENST00000261058 IGLV3-1P01715 115 aa1.98□□□□□ -2.09
CCDC54-201ENST00000261058 COL4A2P08572 1712 aa1.98□□□□□ -2.09
CCDC54-201ENST00000261058 FXYD4P59646 89 aa1.98□□□□□ -2.09
CCDC54-201ENST00000261058 TPRXLQ17RH7 258 aa1.98□□□□□ -2.09
CCDC54-201ENST00000261058 KCNQ1DNQ9H478 68 aa1.98□□□□□ -2.09
CCDC54-201ENST00000261058 DOCK10Q96BY6 2186 aa1.97□□□□□ -2.09
CCDC54-201ENST00000261058 GOLGA4Q13439 2230 aaKnown RBP1.97□□□□□ -2.09
CCDC54-201ENST00000261058 TRGV2A0A075B6R0 118 aa1.97□□□□□ -2.09
CCDC54-201ENST00000261058 IGKV2-40A0A087WW87 121 aaPredicted RBP1.97□□□□□ -2.09
CCDC54-201ENST00000261058 A0A0G2JQZ4 141 aa1.97□□□□□ -2.09
CCDC54-201ENST00000261058 LINC00959A0A1B0GUT2 108 aa1.97□□□□□ -2.09
CCDC54-201ENST00000261058 IGKV2D-40P01614 121 aaPredicted RBP1.97□□□□□ -2.09
CCDC54-201ENST00000261058 DEFB132Q7Z7B7 95 aa1.97□□□□□ -2.09
CCDC54-201ENST00000261058 SMIM2Q9BVW6 85 aa1.97□□□□□ -2.09
CCDC54-201ENST00000261058 CNFNQ9BYD5 112 aa1.97□□□□□ -2.09
CCDC54-201ENST00000261058 ZFHX2Q9C0A1 2572 aaPredicted RBP1.96□□□□□ -2.1
CCDC54-201ENST00000261058 FREM1Q5H8C1 2179 aa1.96□□□□□ -2.1
CCDC54-201ENST00000261058 A0A087WTM6 91 aa1.96□□□□□ -2.1
CCDC54-201ENST00000261058 TRBV6-4A0A1B0GX49 114 aa1.96□□□□□ -2.1
CCDC54-201ENST00000261058 LINC01590Q5TEZ4 76 aa1.96□□□□□ -2.1
CCDC54-201ENST00000261058 TTTY10Q9BZA0 68 aa1.96□□□□□ -2.1
CCDC54-201ENST00000261058 LOC730098B7Z3J9 87 aa1.95□□□□□ -2.1
CCDC54-201ENST00000261058 COX7BP24311 80 aa1.95□□□□□ -2.1
CCDC54-201ENST00000261058 SPACA4Q8TDM5 124 aa1.95□□□□□ -2.1
CCDC54-201ENST00000261058 RTTNQ86VV8 2226 aa1.95□□□□□ -2.1
CCDC54-201ENST00000261058 TRGV1A0A0A0MS02 117 aa1.94□□□□□ -2.1
CCDC54-201ENST00000261058 NBDYA0A0U1RRE5 68 aa1.94□□□□□ -2.1
CCDC54-201ENST00000261058 LINC00308Q8TCZ7 52 aa1.94□□□□□ -2.1
CCDC54-201ENST00000261058 LINC00472Q9H8W2 130 aa1.94□□□□□ -2.1
CCDC54-201ENST00000261058 TNCP24821 2201 aa1.94□□□□□ -2.1
CCDC54-201ENST00000261058 UNC13CQ8NB66 2214 aa1.94□□□□□ -2.1
CCDC54-201ENST00000261058 A0A1B0GU69 56 aa1.93□□□□□ -2.1
CCDC54-201ENST00000261058 IGKV2-29A2NJV5 120 aaPredicted RBP1.93□□□□□ -2.1
CCDC54-201ENST00000261058 MRPL33O75394 65 aaKnown RBP1.93□□□□□ -2.1
CCDC54-201ENST00000261058 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
CCDC54-201ENST00000261058 ABCA4P78363 2273 aa1.93□□□□□ -2.1
CCDC54-201ENST00000261058 ALPK2Q86TB3 2170 aa1.92□□□□□ -2.1
CCDC54-201ENST00000261058 NDUFA1O15239 70 aa1.92□□□□□ -2.1
CCDC54-201ENST00000261058 RPL37AP61513 92 aaKnown RBP1.92□□□□□ -2.1
CCDC54-201ENST00000261058 C10orf55Q5SWW7 151 aa1.92□□□□□ -2.1
CCDC54-201ENST00000261058 Q96NJ1 140 aa1.92□□□□□ -2.1
CCDC54-201ENST00000261058 ZFHX3Q15911 3703 aa1.92□□□□□ -2.1
CCDC54-201ENST00000261058 SDK1Q7Z5N4 2213 aa1.92□□□□□ -2.1
CCDC54-201ENST00000261058 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.91□□□□□ -2.1
CCDC54-201ENST00000261058 C5orf56Q8N8D9 126 aa1.91□□□□□ -2.1
CCDC54-201ENST00000261058 DEFB131BA0A096LNP1 70 aa1.91□□□□□ -2.1
CCDC54-201ENST00000261058 KRTAP12-3P60328 96 aa1.91□□□□□ -2.1
CCDC54-201ENST00000261058 SSC5DA1L4H1 1573 aa1.9□□□□□ -2.1
CCDC54-201ENST00000261058 FBN1P35555 2871 aaKnown RBP1.9□□□□□ -2.1
CCDC54-201ENST00000261058 MUC19Q7Z5P9 8384 aa1.9□□□□□ -2.11
CCDC54-201ENST00000261058 H3BRN7 92 aa1.9□□□□□ -2.11
CCDC54-201ENST00000261058 ACYP2P14621 99 aa1.9□□□□□ -2.11
CCDC54-201ENST00000261058 LINC00158P58513 81 aa1.9□□□□□ -2.11
CCDC54-201ENST00000261058 CACNA1GO43497 2377 aa1.89□□□□□ -2.11
CCDC54-201ENST00000261058 CRIP1P50238 77 aa1.89□□□□□ -2.11
CCDC54-201ENST00000261058 KRTAP12-4P60329 112 aa1.89□□□□□ -2.11
CCDC54-201ENST00000261058 Q6ZQY7 126 aa1.89□□□□□ -2.11
CCDC54-201ENST00000261058 SMIM11BQ8TCY0 68 aa1.89□□□□□ -2.11
CCDC54-201ENST00000261058 FN1P02751 2386 aaKnown RBP1.89□□□□□ -2.11
CCDC54-201ENST00000261058 TNRC6CQ9HCJ0 1690 aaKnown RBP1.89□□□□□ -2.11
CCDC54-201ENST00000261058 H3BSH0 61 aa1.88□□□□□ -2.11
CCDC54-201ENST00000261058 M0R2N4 97 aa1.88□□□□□ -2.11
CCDC54-201ENST00000261058 INE1O15225 51 aa1.88□□□□□ -2.11
CCDC54-201ENST00000261058 CCL19Q99731 98 aa1.86□□□□□ -2.11
CCDC54-201ENST00000261058 KMT2BQ9UMN6 2715 aaPredicted RBP1.85□□□□□ -2.11
CCDC54-201ENST00000261058 PRB1P04280 392 aa1.85□□□□□ -2.11
CCDC54-201ENST00000261058 Q8IZM0 81 aa1.85□□□□□ -2.11
CCDC54-201ENST00000261058 LY6G6CO95867 125 aa1.84□□□□□ -2.11
CCDC54-201ENST00000261058 POLR2KP53803 58 aaKnown RBP1.84□□□□□ -2.11
CCDC54-201ENST00000261058 SSBP3-AS1Q7Z2R9 100 aa1.84□□□□□ -2.11
CCDC54-201ENST00000261058 CDKN2A-AS1Q9UH64 79 aa1.84□□□□□ -2.11
CCDC54-201ENST00000261058 SPTY2D1-AS1A0A0U1RR47 76 aa1.83□□□□□ -2.12
CCDC54-201ENST00000261058 ANGP03950 147 aaKnown RBP1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms