RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 VPS25Q9BRG1 176 aa11.55□□□□□ -0.56
VRK1-201ENST00000216639 CARD19Q96LW7 228 aa11.54□□□□□ -0.56
VRK1-201ENST00000216639 Q6ZRU5 148 aa11.53□□□□□ -0.56
VRK1-201ENST00000216639 DNHD1Q96M86 4753 aa11.53□□□□□ -0.56
VRK1-201ENST00000216639 PRR3P79522 188 aaKnown RBP11.52□□□□□ -0.56
VRK1-201ENST00000216639 UBE2DNLQ8IWF7 75 aa11.52□□□□□ -0.56
VRK1-201ENST00000216639 APLNQ9ULZ1 77 aa11.52□□□□□ -0.56
VRK1-201ENST00000216639 SYCNQ0VAF6 134 aa11.52□□□□□ -0.57
VRK1-201ENST00000216639 S100A7L2Q5SY68 101 aa11.52□□□□□ -0.57
VRK1-201ENST00000216639 NCR3O14931 201 aa11.51□□□□□ -0.57
VRK1-201ENST00000216639 NUPR2A6NF83 97 aa11.5□□□□□ -0.57
VRK1-201ENST00000216639 NDUFC2-KCTD14E9PQ53 114 aa11.5□□□□□ -0.57
VRK1-201ENST00000216639 FAM218AQ96MZ4 157 aa11.49□□□□□ -0.57
VRK1-201ENST00000216639 CBY1Q9Y3M2 126 aa11.49□□□□□ -0.57
VRK1-201ENST00000216639 DNAL4O96015 105 aa11.48□□□□□ -0.57
VRK1-201ENST00000216639 XAGE1AQ9HD64 81 aa11.48□□□□□ -0.57
VRK1-201ENST00000216639 USP17L23D6RBM5 183 aa11.47□□□□□ -0.57
VRK1-201ENST00000216639 Q8NDZ9 215 aa11.47□□□□□ -0.57
VRK1-201ENST00000216639 RPL18AQ02543 176 aaKnown RBP11.46□□□□□ -0.58
VRK1-201ENST00000216639 LCE2DQ5TA82 110 aaPredicted RBP11.45□□□□□ -0.58
VRK1-201ENST00000216639 A0A087WYN8 130 aa11.43□□□□□ -0.58
VRK1-201ENST00000216639 IGLV6-57P01721 117 aa11.43□□□□□ -0.58
VRK1-201ENST00000216639 BAALC-AS2P0C853 105 aa11.43□□□□□ -0.58
VRK1-201ENST00000216639 GAGE2EQ4V326 116 aa11.43□□□□□ -0.58
VRK1-201ENST00000216639 GAGE2DQ9UEU5 116 aa11.43□□□□□ -0.58
VRK1-201ENST00000216639 A0A1B0GX51 115 aa11.43□□□□□ -0.58
VRK1-201ENST00000216639 SNCGO76070 127 aa11.43□□□□□ -0.58
VRK1-201ENST00000216639 LECT2O14960 151 aa11.42□□□□□ -0.58
VRK1-201ENST00000216639 CASC10Q5T4H9 136 aa11.42□□□□□ -0.58
VRK1-201ENST00000216639 TEX49A0A1B0GTD5 131 aa11.41□□□□□ -0.58
VRK1-201ENST00000216639 Q6ZRP5 223 aa11.41□□□□□ -0.58
VRK1-201ENST00000216639 DNAH9Q9NYC9 4486 aa11.41□□□□□ -0.58
VRK1-201ENST00000216639 TLX1NBP0CAT3 122 aa11.4□□□□□ -0.58
VRK1-201ENST00000216639 C6orf99Q4VX62 202 aa11.4□□□□□ -0.58
VRK1-201ENST00000216639 VPREB1P12018 145 aa11.4□□□□□ -0.58
VRK1-201ENST00000216639 M0R378 163 aa11.39□□□□□ -0.59
VRK1-201ENST00000216639 PSCAO43653 123 aa11.38□□□□□ -0.59
VRK1-201ENST00000216639 KRTAP1-5Q9BYS1 174 aa11.38□□□□□ -0.59
VRK1-201ENST00000216639 TRBV10-3A0A0K0K1G6 114 aa11.38□□□□□ -0.59
VRK1-201ENST00000216639 TTC32Q5I0X7 151 aa11.38□□□□□ -0.59
VRK1-201ENST00000216639 TRAV23DV6A0A075B6W5 121 aa11.37□□□□□ -0.59
VRK1-201ENST00000216639 SLPIP03973 132 aa11.36□□□□□ -0.59
VRK1-201ENST00000216639 Q8N814 137 aa11.36□□□□□ -0.59
VRK1-201ENST00000216639 C9orf129Q5T035 196 aaKnown RBP11.35□□□□□ -0.59
VRK1-201ENST00000216639 DIRC1Q969H9 104 aa11.35□□□□□ -0.59
VRK1-201ENST00000216639 ORMDL1Q9P0S3 153 aa11.35□□□□□ -0.59
VRK1-201ENST00000216639 LINC00167Q96N53 147 aa11.34□□□□□ -0.59
VRK1-201ENST00000216639 NKAPP1Q8N9T2 125 aa11.33□□□□□ -0.6
VRK1-201ENST00000216639 COL7A1Q02388 2944 aa11.33□□□□□ -0.6
VRK1-201ENST00000216639 LOC107984640A0A0U1RRK4 108 aa11.32□□□□□ -0.6
VRK1-201ENST00000216639 ZNF73O43830 326 aaPredicted RBP11.32□□□□□ -0.6
VRK1-201ENST00000216639 C14orf177Q52M58 125 aa11.32□□□□□ -0.6
VRK1-201ENST00000216639 LINC00575Q6W349 94 aa11.32□□□□□ -0.6
VRK1-201ENST00000216639 PLA2G2DQ9UNK4 145 aa11.32□□□□□ -0.6
VRK1-201ENST00000216639 NBDYA0A0U1RRE5 68 aa11.32□□□□□ -0.6
VRK1-201ENST00000216639 INAFM2P0DMQ5 153 aa11.32□□□□□ -0.6
VRK1-201ENST00000216639 TRBV7-6A0A0J9YX20 115 aa11.31□□□□□ -0.6
VRK1-201ENST00000216639 hADV29S1A0JD25 119 aa11.3□□□□□ -0.6
VRK1-201ENST00000216639 SIGMAR1Q99720 223 aa11.3□□□□□ -0.6
VRK1-201ENST00000216639 STAB2Q8WWQ8 2551 aa11.29□□□□□ -0.6
VRK1-201ENST00000216639 C22orf24Q9Y442 160 aa11.29□□□□□ -0.6
VRK1-201ENST00000216639 GAGE2BQ13066 116 aa11.29□□□□□ -0.6
VRK1-201ENST00000216639 TMEM256-PLSCR3K7ERE1 68 aa11.28□□□□□ -0.6
VRK1-201ENST00000216639 COX7BP24311 80 aa11.28□□□□□ -0.6
VRK1-201ENST00000216639 CNBPP62633 177 aaKnown RBP11.28□□□□□ -0.6
VRK1-201ENST00000216639 CDIP1Q9H305 208 aa11.28□□□□□ -0.6
VRK1-201ENST00000216639 FAM240AA0A1B0GVK7 77 aa11.27□□□□□ -0.61
VRK1-201ENST00000216639 IGLV5-37A0A075B6J1 123 aa11.26□□□□□ -0.61
VRK1-201ENST00000216639 SERTAD4-AS1Q5TG53 156 aa11.26□□□□□ -0.61
VRK1-201ENST00000216639 ELOF1P60002 83 aaKnown RBP11.26□□□□□ -0.61
VRK1-201ENST00000216639 DNAH1Q9P2D7 4330 aa11.26□□□□□ -0.61
VRK1-201ENST00000216639 H3BQ85 93 aa11.25□□□□□ -0.61
VRK1-201ENST00000216639 DYNC2H1Q8NCM8 4307 aaKnown RBP11.24□□□□□ -0.61
VRK1-201ENST00000216639 ACYP1P07311 99 aa11.24□□□□□ -0.61
VRK1-201ENST00000216639 C7orf33Q8WU49 177 aa11.24□□□□□ -0.61
VRK1-201ENST00000216639 GHRHP01286 108 aa11.23□□□□□ -0.61
VRK1-201ENST00000216639 KCNQ1DNQ9H478 68 aa11.23□□□□□ -0.61
VRK1-201ENST00000216639 OBSCN-AS1Q96MR7 158 aa11.23□□□□□ -0.61
VRK1-201ENST00000216639 JMJD7-PLA2G4BH0Y9G9 81 aa11.22□□□□□ -0.61
VRK1-201ENST00000216639 PKIGQ9Y2B9 76 aa11.22□□□□□ -0.61
VRK1-201ENST00000216639 FAM168BA1KXE4 195 aa11.21□□□□□ -0.62
VRK1-201ENST00000216639 C16orf90A8MZG2 172 aa11.2□□□□□ -0.62
VRK1-201ENST00000216639 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.2□□□□□ -0.62
VRK1-201ENST00000216639 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.19□□□□□ -0.62
VRK1-201ENST00000216639 Q6ZQY7 126 aa11.19□□□□□ -0.62
VRK1-201ENST00000216639 FAM19A5Q7Z5A7 132 aaPredicted RBP11.19□□□□□ -0.62
VRK1-201ENST00000216639 LRCOL1A6NCL2 159 aa11.18□□□□□ -0.62
VRK1-201ENST00000216639 PRYO14603 147 aa11.18□□□□□ -0.62
VRK1-201ENST00000216639 XGP55808 180 aa11.18□□□□□ -0.62
VRK1-201ENST00000216639 LINC00528Q8N1L1 170 aa11.18□□□□□ -0.62
VRK1-201ENST00000216639 C14orf132Q9NPU4 83 aa11.18□□□□□ -0.62
VRK1-201ENST00000216639 IGLV1-50A0A075B6I6 118 aa11.18□□□□□ -0.62
VRK1-201ENST00000216639 Q6ZRN7 208 aaPredicted RBP11.18□□□□□ -0.62
VRK1-201ENST00000216639 MRPL55Q7Z7F7 128 aaKnown RBP11.18□□□□□ -0.62
VRK1-201ENST00000216639 GAGE2AQ6NT46 116 aa11.17□□□□□ -0.62
VRK1-201ENST00000216639 M0R2N4 97 aa11.16□□□□□ -0.62
VRK1-201ENST00000216639 A0A096LNI7 61 aa11.15□□□□□ -0.62
VRK1-201ENST00000216639 RPL37AP8A6NKH3 93 aa11.15□□□□□ -0.62
VRK1-201ENST00000216639 MT-ATP8P03928 68 aa11.15□□□□□ -0.63
VRK1-201ENST00000216639 PCP4P48539 62 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms