RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CTRLP40313 264 aa8.43□□□□□ -1.06
CLN3-249ENST00000636685 KRTDAPP60985 99 aa8.43□□□□□ -1.06
CLN3-249ENST00000636685 RNF151Q2KHN1 245 aa8.43□□□□□ -1.06
CLN3-249ENST00000636685 FAM104BQ5XKR9 115 aa8.43□□□□□ -1.06
CLN3-249ENST00000636685 TEX43Q6ZNM6 134 aa8.43□□□□□ -1.06
CLN3-249ENST00000636685 RPL39LQ96EH5 51 aaKnown RBP8.43□□□□□ -1.06
CLN3-249ENST00000636685 FAM19A2Q8N3H0 131 aa8.42□□□□□ -1.06
CLN3-249ENST00000636685 CDC42SE2Q9NRR3 84 aa8.42□□□□□ -1.06
CLN3-249ENST00000636685 PPBPP02775 128 aa8.41□□□□□ -1.06
CLN3-249ENST00000636685 C3orf79P0CE67 100 aa8.41□□□□□ -1.06
CLN3-249ENST00000636685 SPAG11BQ08648 103 aa8.41□□□□□ -1.06
CLN3-249ENST00000636685 TWIST1Q15672 202 aa8.41□□□□□ -1.06
CLN3-249ENST00000636685 PMCHL1Q16048 86 aa8.41□□□□□ -1.06
CLN3-249ENST00000636685 LINC00173Q6ZV60 143 aa8.41□□□□□ -1.06
CLN3-249ENST00000636685 CNFNQ9BYD5 112 aa8.41□□□□□ -1.06
CLN3-249ENST00000636685 TMEM191AQ9H0A3 160 aa8.41□□□□□ -1.06
CLN3-249ENST00000636685 GAGE2EQ4V326 116 aa8.4□□□□□ -1.06
CLN3-249ENST00000636685 SMIM15Q7Z3B0 74 aa8.4□□□□□ -1.06
CLN3-249ENST00000636685 C5orf38Q86SI9 138 aa8.4□□□□□ -1.06
CLN3-249ENST00000636685 VAMP8Q9BV40 100 aa8.4□□□□□ -1.06
CLN3-249ENST00000636685 GAGE2DQ9UEU5 116 aa8.4□□□□□ -1.06
CLN3-249ENST00000636685 LBHQ53QV2 105 aaPredicted RBP8.39□□□□□ -1.07
CLN3-249ENST00000636685 FA2HQ7L5A8 372 aa8.39□□□□□ -1.07
CLN3-249ENST00000636685 ORMDL3Q8N138 153 aa8.39□□□□□ -1.07
CLN3-249ENST00000636685 URB1-AS1Q96HZ7 61 aa8.39□□□□□ -1.07
CLN3-249ENST00000636685 PRELID3AQ96N28 172 aa8.39□□□□□ -1.07
CLN3-249ENST00000636685 HSPB8Q9UJY1 196 aa8.39□□□□□ -1.07
CLN3-249ENST00000636685 LAMTOR2Q9Y2Q5 125 aa8.39□□□□□ -1.07
CLN3-249ENST00000636685 C20orf202A1L168 122 aa8.38□□□□□ -1.07
CLN3-249ENST00000636685 SDHAF1A6NFY7 115 aa8.38□□□□□ -1.07
CLN3-249ENST00000636685 LEPROTL1O95214 131 aa8.38□□□□□ -1.07
CLN3-249ENST00000636685 MRPL51Q4U2R6 128 aaKnown RBP8.38□□□□□ -1.07
CLN3-249ENST00000636685 C10orf25Q5T742 122 aa8.38□□□□□ -1.07
CLN3-249ENST00000636685 PPDPFQ9H3Y8 114 aa8.38□□□□□ -1.07
CLN3-249ENST00000636685 ANAPC11Q9NYG5 84 aa8.38□□□□□ -1.07
CLN3-249ENST00000636685 MRPL35Q9NZE8 188 aaKnown RBP8.38□□□□□ -1.07
CLN3-249ENST00000636685 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.37□□□□□ -1.07
CLN3-249ENST00000636685 CKS2P33552 79 aa8.37□□□□□ -1.07
CLN3-249ENST00000636685 ASB16-AS1Q495Z4 193 aa8.37□□□□□ -1.07
CLN3-249ENST00000636685 KRTAP13-2Q52LG2 175 aa8.37□□□□□ -1.07
CLN3-249ENST00000636685 C14orf144Q96I85 54 aa8.37□□□□□ -1.07
CLN3-249ENST00000636685 MIEN1Q9BRT3 115 aa8.37□□□□□ -1.07
CLN3-249ENST00000636685 TLX1NBP0CAT3 122 aa8.36□□□□□ -1.07
CLN3-249ENST00000636685 PET117Q6UWS5 81 aa8.36□□□□□ -1.07
CLN3-249ENST00000636685 MRPL52Q86TS9 123 aaKnown RBP8.36□□□□□ -1.07
CLN3-249ENST00000636685 AMN1Q8IY45 258 aa8.36□□□□□ -1.07
CLN3-249ENST00000636685 LINC00304Q8N9R0 145 aa8.36□□□□□ -1.07
CLN3-249ENST00000636685 MAP1LC3CQ9BXW4 147 aa8.36□□□□□ -1.07
CLN3-249ENST00000636685 D6R8Y8 96 aa8.35□□□□□ -1.07
CLN3-249ENST00000636685 I3L3M4 83 aa8.35□□□□□ -1.07
CLN3-249ENST00000636685 TSHBP01222 138 aa8.35□□□□□ -1.07
CLN3-249ENST00000636685 RNASE13Q5GAN3 156 aaKnown RBP8.35□□□□□ -1.07
CLN3-249ENST00000636685 LCE2CQ5TA81 110 aa8.35□□□□□ -1.07
CLN3-249ENST00000636685 MRAP2Q96G30 205 aa8.35□□□□□ -1.07
CLN3-249ENST00000636685 UNQ6190/PRO20217Q6UXQ8 127 aa8.34□□□□□ -1.07
CLN3-249ENST00000636685 MAP1LC3AQ9H492 121 aa8.34□□□□□ -1.07
CLN3-249ENST00000636685 C6orf48Q9UBA6 75 aa8.34□□□□□ -1.07
CLN3-249ENST00000636685 TRAV13-1A0A0B4J241 112 aa8.33□□□□□ -1.08
CLN3-249ENST00000636685 PRSS47A8MTI9 375 aa8.33□□□□□ -1.08
CLN3-249ENST00000636685 SYS1-DBNDD2H3BUS1 97 aa8.33□□□□□ -1.08
CLN3-249ENST00000636685 NDUFA1O15239 70 aa8.33□□□□□ -1.08
CLN3-249ENST00000636685 IFI27P40305 119 aaPredicted RBP8.33□□□□□ -1.08
CLN3-249ENST00000636685 SPATA45Q537H7 98 aa8.33□□□□□ -1.08
CLN3-249ENST00000636685 ORAOV1Q8WV07 137 aa8.33□□□□□ -1.08
CLN3-249ENST00000636685 NXT2Q9NPJ8 142 aaKnown RBP8.33□□□□□ -1.08
CLN3-249ENST00000636685 PAM16Q9Y3D7 125 aa8.33□□□□□ -1.08
CLN3-249ENST00000636685 LOC389332A0A1B0GUA5 103 aa8.32□□□□□ -1.08
CLN3-249ENST00000636685 LINC01546A6NGU7 62 aa8.32□□□□□ -1.08
CLN3-249ENST00000636685 M0R143 59 aa8.32□□□□□ -1.08
CLN3-249ENST00000636685 C9orf129Q5T035 196 aaKnown RBP8.31□□□□□ -1.08
CLN3-249ENST00000636685 C2orf88Q9BSF0 95 aa8.31□□□□□ -1.08
CLN3-249ENST00000636685 UQCR10Q9UDW1 63 aa8.31□□□□□ -1.08
CLN3-249ENST00000636685 HSBP1L1C9JCN9 74 aa8.3□□□□□ -1.08
CLN3-249ENST00000636685 F8WDY8 70 aa8.3□□□□□ -1.08
CLN3-249ENST00000636685 TNFRSF6BO95407 300 aa8.3□□□□□ -1.08
CLN3-249ENST00000636685 NPYP01303 97 aa8.3□□□□□ -1.08
CLN3-249ENST00000636685 HBDP02042 147 aa8.3□□□□□ -1.08
CLN3-249ENST00000636685 LINC00337Q8N6G1 96 aa8.3□□□□□ -1.08
CLN3-249ENST00000636685 Q8N8P6 123 aa8.3□□□□□ -1.08
CLN3-249ENST00000636685 PPP1R17O96001 155 aa8.29□□□□□ -1.08
CLN3-249ENST00000636685 IGLC3P0DOY3 106 aa8.29□□□□□ -1.08
CLN3-249ENST00000636685 FCER1GP30273 86 aa8.29□□□□□ -1.08
CLN3-249ENST00000636685 RPL28P46779 137 aaKnown RBP8.29□□□□□ -1.08
CLN3-249ENST00000636685 TRBV6-5A0A0K0K1A5 114 aa8.28□□□□□ -1.08
CLN3-249ENST00000636685 SMKR1H3BMG3 65 aa8.28□□□□□ -1.08
CLN3-249ENST00000636685 MT1HP80294 61 aa8.28□□□□□ -1.08
CLN3-249ENST00000636685 LINC01545Q5VT33 79 aa8.28□□□□□ -1.08
CLN3-249ENST00000636685 ST20Q9HBF5 79 aa8.28□□□□□ -1.08
CLN3-249ENST00000636685 LINC00242Q5T6M2 205 aa8.27□□□□□ -1.09
CLN3-249ENST00000636685 K7EMI3 77 aa8.26□□□□□ -1.09
CLN3-249ENST00000636685 CFC1BP0CG36 223 aa8.26□□□□□ -1.09
CLN3-249ENST00000636685 LORP23490 312 aaPredicted RBP8.26□□□□□ -1.09
CLN3-249ENST00000636685 SEC61BP60468 96 aaKnown RBP8.26□□□□□ -1.09
CLN3-249ENST00000636685 KRTAP13-3Q3SY46 172 aa8.26□□□□□ -1.09
CLN3-249ENST00000636685 Q6ZUT4 128 aa8.26□□□□□ -1.09
CLN3-249ENST00000636685 IFI27L1Q96BM0 104 aa8.26□□□□□ -1.09
CLN3-249ENST00000636685 C20orf78Q9BR46 151 aa8.26□□□□□ -1.09
CLN3-249ENST00000636685 UBE2D4Q9Y2X8 147 aa8.26□□□□□ -1.09
CLN3-249ENST00000636685 C22orf24Q9Y442 160 aa8.26□□□□□ -1.09
CLN3-249ENST00000636685 BCE1O60756 84 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms