RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 DPM2O94777 84 aa10.64□□□□□ -0.71
SHKBP1-219ENST00000599575 SPINK8P0C7L1 97 aa10.64□□□□□ -0.71
SHKBP1-219ENST00000599575 AKR1D1P51857 326 aa10.64□□□□□ -0.71
SHKBP1-219ENST00000599575 CIRBPQ14011 172 aaKnown RBP10.64□□□□□ -0.71
SHKBP1-219ENST00000599575 LINC01620Q4KN68 170 aa10.64□□□□□ -0.71
SHKBP1-219ENST00000599575 TLX1NBP0CAT3 122 aa10.63□□□□□ -0.71
SHKBP1-219ENST00000599575 TMEM223A0PJW6 202 aa10.62□□□□□ -0.71
SHKBP1-219ENST00000599575 S100A2P29034 98 aa10.62□□□□□ -0.71
SHKBP1-219ENST00000599575 UNQ6190/PRO20217Q6UXQ8 127 aa10.62□□□□□ -0.71
SHKBP1-219ENST00000599575 IGKCP01834 107 aa10.61□□□□□ -0.71
SHKBP1-219ENST00000599575 XGP55808 180 aa10.6□□□□□ -0.71
SHKBP1-219ENST00000599575 C10orf25Q5T742 122 aa10.6□□□□□ -0.71
SHKBP1-219ENST00000599575 LINC01545Q5VT33 79 aa10.6□□□□□ -0.71
SHKBP1-219ENST00000599575 C2orf82Q6UX34 121 aa10.6□□□□□ -0.71
SHKBP1-219ENST00000599575 HIST3H2BBQ8N257 126 aa10.6□□□□□ -0.71
SHKBP1-219ENST00000599575 FAM30AQ9NZY2 134 aa10.6□□□□□ -0.71
SHKBP1-219ENST00000599575 C6orf48Q9UBA6 75 aa10.6□□□□□ -0.71
SHKBP1-219ENST00000599575 KIAA1109Q2LD37 5005 aa10.6□□□□□ -0.71
SHKBP1-219ENST00000599575 C20orf202A1L168 122 aa10.59□□□□□ -0.71
SHKBP1-219ENST00000599575 C3orf79P0CE67 100 aa10.59□□□□□ -0.71
SHKBP1-219ENST00000599575 HERVK_113P61574 105 aa10.59□□□□□ -0.71
SHKBP1-219ENST00000599575 SPACA4Q8TDM5 124 aa10.59□□□□□ -0.71
SHKBP1-219ENST00000599575 NDUFC2-KCTD14E9PQ53 114 aa10.58□□□□□ -0.72
SHKBP1-219ENST00000599575 PTTG1IPP53801 180 aa10.57□□□□□ -0.72
SHKBP1-219ENST00000599575 KRTDAPP60985 99 aa10.57□□□□□ -0.72
SHKBP1-219ENST00000599575 HIST1H2BLQ99880 126 aa10.57□□□□□ -0.72
SHKBP1-219ENST00000599575 A0A096LNI7 61 aa10.56□□□□□ -0.72
SHKBP1-219ENST00000599575 C5orf52A6NGY3 159 aa10.56□□□□□ -0.72
SHKBP1-219ENST00000599575 SCXQ7RTU7 201 aa10.56□□□□□ -0.72
SHKBP1-219ENST00000599575 DPH3Q96FX2 82 aa10.56□□□□□ -0.72
SHKBP1-219ENST00000599575 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.56□□□□□ -0.72
SHKBP1-219ENST00000599575 APOBP04114 4563 aaKnown RBP10.56□□□□□ -0.72
SHKBP1-219ENST00000599575 RYR1P21817 5038 aa10.55□□□□□ -0.72
SHKBP1-219ENST00000599575 SNRPEP62304 92 aaKnown RBP10.55□□□□□ -0.72
SHKBP1-219ENST00000599575 COX17Q14061 63 aa10.55□□□□□ -0.72
SHKBP1-219ENST00000599575 CIRBP-AS1Q8TBR5 109 aa10.55□□□□□ -0.72
SHKBP1-219ENST00000599575 PLEKHB2Q96CS7 222 aa10.55□□□□□ -0.72
SHKBP1-219ENST00000599575 IGKV2-24A0A0C4DH68 120 aa10.54□□□□□ -0.72
SHKBP1-219ENST00000599575 RPL18AQ02543 176 aaKnown RBP10.54□□□□□ -0.72
SHKBP1-219ENST00000599575 PMCHL2Q9BQD1 86 aa10.54□□□□□ -0.72
SHKBP1-219ENST00000599575 PLAC8Q9NZF1 115 aa10.54□□□□□ -0.72
SHKBP1-219ENST00000599575 DNAH8Q96JB1 4490 aa10.54□□□□□ -0.72
SHKBP1-219ENST00000599575 LINC00587B1AMM8 73 aa10.53□□□□□ -0.72
SHKBP1-219ENST00000599575 LEPROTO15243 131 aa10.53□□□□□ -0.72
SHKBP1-219ENST00000599575 HERV-K104P63124 156 aa10.53□□□□□ -0.72
SHKBP1-219ENST00000599575 GAGE2BQ13066 116 aa10.53□□□□□ -0.72
SHKBP1-219ENST00000599575 MAJINQ3KP22 176 aa10.53□□□□□ -0.72
SHKBP1-219ENST00000599575 Q6ZRP5 223 aa10.53□□□□□ -0.72
SHKBP1-219ENST00000599575 ZNF625Q96I27 306 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-219ENST00000599575 A0A087WYN8 130 aa10.52□□□□□ -0.73
SHKBP1-219ENST00000599575 PANO1I0J062 215 aa10.52□□□□□ -0.73
SHKBP1-219ENST00000599575 CHTF8P0CG12 524 aa10.52□□□□□ -0.73
SHKBP1-219ENST00000599575 NMUP48645 174 aa10.52□□□□□ -0.73
SHKBP1-219ENST00000599575 EPM2AB3EWF7 344 aa10.51□□□□□ -0.73
SHKBP1-219ENST00000599575 E9PLD3 99 aa10.51□□□□□ -0.73
SHKBP1-219ENST00000599575 STPG4Q8N801 248 aa10.51□□□□□ -0.73
SHKBP1-219ENST00000599575 MYMXA0A1B0GTQ4 84 aa10.5□□□□□ -0.73
SHKBP1-219ENST00000599575 J3QQQ9 107 aa10.5□□□□□ -0.73
SHKBP1-219ENST00000599575 C9orf116Q5BN46 136 aaPredicted RBP10.5□□□□□ -0.73
SHKBP1-219ENST00000599575 Q8N1X5 172 aa10.5□□□□□ -0.73
SHKBP1-219ENST00000599575 NDUFA12Q9UI09 145 aa10.49□□□□□ -0.73
SHKBP1-219ENST00000599575 ERG28Q9UKR5 140 aa10.49□□□□□ -0.73
SHKBP1-219ENST00000599575 HERC2O95714 4834 aa10.48□□□□□ -0.73
SHKBP1-219ENST00000599575 FAM229AH3BQW9 127 aa10.48□□□□□ -0.73
SHKBP1-219ENST00000599575 GAGE2EQ4V326 116 aa10.48□□□□□ -0.73
SHKBP1-219ENST00000599575 GAGE2DQ9UEU5 116 aa10.48□□□□□ -0.73
SHKBP1-219ENST00000599575 LGALS3P17931 250 aaKnown RBP10.47□□□□□ -0.73
SHKBP1-219ENST00000599575 HSPG2P98160 4391 aa10.47□□□□□ -0.73
SHKBP1-219ENST00000599575 HAMPP81172 84 aa10.45□□□□□ -0.74
SHKBP1-219ENST00000599575 C7orf33Q8WU49 177 aa10.45□□□□□ -0.74
SHKBP1-219ENST00000599575 PFN2P35080 140 aa10.43□□□□□ -0.74
SHKBP1-219ENST00000599575 TSPEAR-AS2P59090 65 aa10.43□□□□□ -0.74
SHKBP1-219ENST00000599575 C9orf129Q5T035 196 aaKnown RBP10.43□□□□□ -0.74
SHKBP1-219ENST00000599575 LINC00528Q8N1L1 170 aa10.43□□□□□ -0.74
SHKBP1-219ENST00000599575 PLA2G2DQ9UNK4 145 aa10.43□□□□□ -0.74
SHKBP1-219ENST00000599575 A0A1W2PNN7 141 aa10.42□□□□□ -0.74
SHKBP1-219ENST00000599575 SMR3BP02814 79 aaPredicted RBP10.42□□□□□ -0.74
SHKBP1-219ENST00000599575 PLA2G1BP04054 148 aaKnown RBP10.42□□□□□ -0.74
SHKBP1-219ENST00000599575 LINC00158P58513 81 aa10.41□□□□□ -0.74
SHKBP1-219ENST00000599575 MEIG1Q5JSS6 88 aa10.41□□□□□ -0.74
SHKBP1-219ENST00000599575 XAGE1AQ9HD64 81 aa10.41□□□□□ -0.74
SHKBP1-219ENST00000599575 HSBP1L1C9JCN9 74 aa10.4□□□□□ -0.74
SHKBP1-219ENST00000599575 TP73-AS1Q9UF72 201 aa10.4□□□□□ -0.74
SHKBP1-219ENST00000599575 Q5VSD8 79 aa10.39□□□□□ -0.75
SHKBP1-219ENST00000599575 SND1-IT1Q9HBX3 110 aa10.39□□□□□ -0.75
SHKBP1-219ENST00000599575 SCGB1D1O95968 90 aa10.38□□□□□ -0.75
SHKBP1-219ENST00000599575 LBHQ53QV2 105 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-219ENST00000599575 IGLV5-37A0A075B6J1 123 aa10.37□□□□□ -0.75
SHKBP1-219ENST00000599575 SMIM13P0DJ93 91 aa10.37□□□□□ -0.75
SHKBP1-219ENST00000599575 RPL24P83731 157 aaKnown RBP10.37□□□□□ -0.75
SHKBP1-219ENST00000599575 FAM19A5Q7Z5A7 132 aaPredicted RBP10.37□□□□□ -0.75
SHKBP1-219ENST00000599575 ATOH7Q8N100 152 aa10.37□□□□□ -0.75
SHKBP1-219ENST00000599575 IGKV2D-26A0A0A0MRZ7 120 aa10.36□□□□□ -0.75
SHKBP1-219ENST00000599575 FAM168BA1KXE4 195 aa10.36□□□□□ -0.75
SHKBP1-219ENST00000599575 ZNF815PA8K554 130 aa10.36□□□□□ -0.75
SHKBP1-219ENST00000599575 M0QXV9 152 aa10.36□□□□□ -0.75
SHKBP1-219ENST00000599575 TIMM17BO60830 172 aa10.36□□□□□ -0.75
SHKBP1-219ENST00000599575 TMA7Q9Y2S6 64 aaKnown RBP10.36□□□□□ -0.75
SHKBP1-219ENST00000599575 SRRM2Q9UQ35 2752 aaKnown RBP10.36□□□□□ -0.75
SHKBP1-219ENST00000599575 FAT1Q14517 4588 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms