RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ZNF22P17026 224 aaPredicted RBP8.98□□□□□ -0.97
SHKBP1-217ENST00000598558 S100A1P23297 94 aa8.98□□□□□ -0.97
SHKBP1-217ENST00000598558 RNF151Q2KHN1 245 aa8.98□□□□□ -0.97
SHKBP1-217ENST00000598558 MAJINQ3KP22 176 aa8.98□□□□□ -0.97
SHKBP1-217ENST00000598558 C9orf116Q5BN46 136 aaPredicted RBP8.98□□□□□ -0.97
SHKBP1-217ENST00000598558 LINC00528Q8N1L1 170 aa8.98□□□□□ -0.97
SHKBP1-217ENST00000598558 VPS13BQ7Z7G8 4022 aa8.98□□□□□ -0.97
SHKBP1-217ENST00000598558 LOC107984640A0A0U1RRK4 108 aa8.97□□□□□ -0.97
SHKBP1-217ENST00000598558 F8WDY8 70 aa8.97□□□□□ -0.97
SHKBP1-217ENST00000598558 PTTG1IPP53801 180 aa8.97□□□□□ -0.97
SHKBP1-217ENST00000598558 KRTAP10-4P60372 401 aaPredicted RBP8.97□□□□□ -0.97
SHKBP1-217ENST00000598558 GAGE2BQ13066 116 aa8.97□□□□□ -0.97
SHKBP1-217ENST00000598558 Q8IZM0 81 aa8.97□□□□□ -0.97
SHKBP1-217ENST00000598558 DPH3Q96FX2 82 aa8.97□□□□□ -0.97
SHKBP1-217ENST00000598558 PLAC8Q9NZF1 115 aa8.97□□□□□ -0.97
SHKBP1-217ENST00000598558 PCLOQ9Y6V0 5065 aa8.97□□□□□ -0.97
SHKBP1-217ENST00000598558 C6orf226Q5I0X4 101 aa8.96□□□□□ -0.98
SHKBP1-217ENST00000598558 PACRGQ96M98 296 aaPredicted RBP8.96□□□□□ -0.98
SHKBP1-217ENST00000598558 CHTOPQ9Y3Y2 248 aaKnown RBP8.96□□□□□ -0.98
SHKBP1-217ENST00000598558 TRAV12-1A0A0B4J245 112 aa8.95□□□□□ -0.98
SHKBP1-217ENST00000598558 A0A1W2PNN7 141 aa8.95□□□□□ -0.98
SHKBP1-217ENST00000598558 FABP4P15090 132 aa8.95□□□□□ -0.98
SHKBP1-217ENST00000598558 Q6ZRP5 223 aa8.95□□□□□ -0.98
SHKBP1-217ENST00000598558 STPG4Q8N801 248 aa8.95□□□□□ -0.98
SHKBP1-217ENST00000598558 IGLV5-39A0A0G2JS06 123 aa8.94□□□□□ -0.98
SHKBP1-217ENST00000598558 FAM229AH3BQW9 127 aa8.94□□□□□ -0.98
SHKBP1-217ENST00000598558 LEPROTL1O95214 131 aa8.94□□□□□ -0.98
SHKBP1-217ENST00000598558 PRSS2P07478 247 aa8.94□□□□□ -0.98
SHKBP1-217ENST00000598558 COX7B2Q8TF08 81 aa8.94□□□□□ -0.98
SHKBP1-217ENST00000598558 TLX1NBP0CAT3 122 aa8.93□□□□□ -0.98
SHKBP1-217ENST00000598558 RPL18AQ02543 176 aaKnown RBP8.93□□□□□ -0.98
SHKBP1-217ENST00000598558 ODF1Q14990 250 aa8.93□□□□□ -0.98
SHKBP1-217ENST00000598558 TRBV30A0A0K0K1B3 111 aa8.92□□□□□ -0.98
SHKBP1-217ENST00000598558 H0Y8G0 127 aa8.92□□□□□ -0.98
SHKBP1-217ENST00000598558 CKS1BP61024 79 aa8.92□□□□□ -0.98
SHKBP1-217ENST00000598558 F8VRH5 84 aa8.91□□□□□ -0.98
SHKBP1-217ENST00000598558 H3BRM9 83 aa8.91□□□□□ -0.98
SHKBP1-217ENST00000598558 GAGE2EQ4V326 116 aa8.91□□□□□ -0.98
SHKBP1-217ENST00000598558 TMEM170BQ5T4T1 132 aa8.91□□□□□ -0.98
SHKBP1-217ENST00000598558 KRTAP7-1Q8IUC3 87 aa8.91□□□□□ -0.98
SHKBP1-217ENST00000598558 GAGE2DQ9UEU5 116 aa8.91□□□□□ -0.98
SHKBP1-217ENST00000598558 SRRM2Q9UQ35 2752 aaKnown RBP8.9□□□□□ -0.98
SHKBP1-217ENST00000598558 FAM168BA1KXE4 195 aa8.9□□□□□ -0.98
SHKBP1-217ENST00000598558 COA6Q5JTJ3 125 aaKnown RBP8.9□□□□□ -0.98
SHKBP1-217ENST00000598558 PMCHL2Q9BQD1 86 aa8.9□□□□□ -0.98
SHKBP1-217ENST00000598558 LINC00474Q9P2X8 69 aa8.9□□□□□ -0.98
SHKBP1-217ENST00000598558 TMEM223A0PJW6 202 aa8.89□□□□□ -0.99
SHKBP1-217ENST00000598558 INAFM2P0DMQ5 153 aa8.89□□□□□ -0.99
SHKBP1-217ENST00000598558 C9orf129Q5T035 196 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-217ENST00000598558 HSPB8Q9UJY1 196 aa8.89□□□□□ -0.99
SHKBP1-217ENST00000598558 PKIGQ9Y2B9 76 aa8.89□□□□□ -0.99
SHKBP1-217ENST00000598558 NDUFC2-KCTD14E9PQ53 114 aa8.88□□□□□ -0.99
SHKBP1-217ENST00000598558 HNRNPA3P51991 378 aaKnown RBP8.88□□□□□ -0.99
SHKBP1-217ENST00000598558 PLA2G1BP04054 148 aaKnown RBP8.87□□□□□ -0.99
SHKBP1-217ENST00000598558 CXCL5P42830 114 aa8.87□□□□□ -0.99
SHKBP1-217ENST00000598558 RPL37AP61513 92 aaKnown RBP8.87□□□□□ -0.99
SHKBP1-217ENST00000598558 PHF5AQ7RTV0 110 aaKnown RBP8.85□□□□□ -0.99
SHKBP1-217ENST00000598558 KRTAP11-1Q8IUC1 163 aa8.85□□□□□ -0.99
SHKBP1-217ENST00000598558 ZNF625Q96I27 306 aaPredicted RBP8.85□□□□□ -0.99
SHKBP1-217ENST00000598558 XAGE1AQ9HD64 81 aa8.85□□□□□ -0.99
SHKBP1-217ENST00000598558 MAP1LC3CQ9BXW4 147 aa8.84□□□□□ -0.99
SHKBP1-217ENST00000598558 SYS1-DBNDD2H3BUS1 97 aa8.83□□□□□ -1
SHKBP1-217ENST00000598558 SERTAD4-AS1Q5TG53 156 aa8.83□□□□□ -1
SHKBP1-217ENST00000598558 FAM19A5Q7Z5A7 132 aaPredicted RBP8.83□□□□□ -1
SHKBP1-217ENST00000598558 DPM2O94777 84 aa8.82□□□□□ -1
SHKBP1-217ENST00000598558 C3orf79P0CE67 100 aa8.82□□□□□ -1
SHKBP1-217ENST00000598558 TSPEAR-AS2P59090 65 aa8.82□□□□□ -1
SHKBP1-217ENST00000598558 PFN2P35080 140 aa8.81□□□□□ -1
SHKBP1-217ENST00000598558 C7orf33Q8WU49 177 aa8.81□□□□□ -1
SHKBP1-217ENST00000598558 IGKCP01834 107 aa8.8□□□□□ -1
SHKBP1-217ENST00000598558 PLNP26678 52 aa8.8□□□□□ -1
SHKBP1-217ENST00000598558 MYCBP2O75592 4640 aa8.79□□□□□ -1
SHKBP1-217ENST00000598558 PRR3P79522 188 aaKnown RBP8.79□□□□□ -1
SHKBP1-217ENST00000598558 LINC01545Q5VT33 79 aa8.79□□□□□ -1
SHKBP1-217ENST00000598558 ERG28Q9UKR5 140 aa8.79□□□□□ -1
SHKBP1-217ENST00000598558 PKHD1L1Q86WI1 4243 aa8.78□□□□□ -1
SHKBP1-217ENST00000598558 LEPROTO15243 131 aa8.78□□□□□ -1
SHKBP1-217ENST00000598558 PET117Q6UWS5 81 aa8.78□□□□□ -1
SHKBP1-217ENST00000598558 FLG2Q5D862 2391 aaPredicted RBP8.77□□□□□ -1.01
SHKBP1-217ENST00000598558 M0QXV9 152 aa8.77□□□□□ -1.01
SHKBP1-217ENST00000598558 KRTDAPP60985 99 aa8.77□□□□□ -1.01
SHKBP1-217ENST00000598558 HIST3H2BBQ8N257 126 aa8.77□□□□□ -1.01
SHKBP1-217ENST00000598558 Q8NDZ9 215 aa8.77□□□□□ -1.01
SHKBP1-217ENST00000598558 PSORS1C2Q9UIG4 136 aa8.77□□□□□ -1.01
SHKBP1-217ENST00000598558 C22orf24Q9Y442 160 aa8.77□□□□□ -1.01
SHKBP1-217ENST00000598558 A0A0U1RRA0 63 aa8.76□□□□□ -1.01
SHKBP1-217ENST00000598558 SND1-IT1Q9HBX3 110 aa8.76□□□□□ -1.01
SHKBP1-217ENST00000598558 NDUFA12Q9UI09 145 aa8.76□□□□□ -1.01
SHKBP1-217ENST00000598558 LRP1Q07954 4544 aaKnown RBP8.76□□□□□ -1.01
SHKBP1-217ENST00000598558 J3QQQ9 107 aa8.74□□□□□ -1.01
SHKBP1-217ENST00000598558 SMIM13P0DJ93 91 aa8.74□□□□□ -1.01
SHKBP1-217ENST00000598558 SRSF9Q13242 221 aaKnown RBP eCLIP8.74□□□□□ -1.01
SHKBP1-217ENST00000598558 COX17Q14061 63 aa8.74□□□□□ -1.01
SHKBP1-217ENST00000598558 PLEKHB2Q96CS7 222 aa8.74□□□□□ -1.01
SHKBP1-217ENST00000598558 HIST1H2BLQ99880 126 aa8.74□□□□□ -1.01
SHKBP1-217ENST00000598558 PLA2G2DQ9UNK4 145 aa8.74□□□□□ -1.01
SHKBP1-217ENST00000598558 LINC00158P58513 81 aa8.73□□□□□ -1.01
SHKBP1-217ENST00000598558 FAT3Q8TDW7 4589 aa8.73□□□□□ -1.01
SHKBP1-217ENST00000598558 E9PLD3 99 aa8.72□□□□□ -1.01
SHKBP1-217ENST00000598558 SNRPEP62304 92 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms