RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595		Q1T7F1	81 aa		2.98	□□□□□ -1.93
SS18-223	ENST00000583595	GPHB5	Q86YW7	130 aa		2.98	□□□□□ -1.93
SS18-223	ENST00000583595		Q8N2B8	174 aa		2.98	□□□□□ -1.93
SS18-223	ENST00000583595	RMI2	Q96E14	147 aa		2.98	□□□□□ -1.93
SS18-223	ENST00000583595	CCL13	Q99616	98 aa		2.98	□□□□□ -1.93
SS18-223	ENST00000583595	C11orf68	Q9H3H3	251 aa	Known RBP	2.98	□□□□□ -1.93
SS18-223	ENST00000583595	PKD1L2	Q7Z442	2459 aa		2.97	□□□□□ -1.93
SS18-223	ENST00000583595		A8MUU9	505 aa		2.97	□□□□□ -1.93
SS18-223	ENST00000583595	RNASE4	P34096	147 aa	Known RBP	2.97	□□□□□ -1.93
SS18-223	ENST00000583595	POLR2K	P53803	58 aa	Known RBP	2.97	□□□□□ -1.93
SS18-223	ENST00000583595		Q8N9L7	120 aa		2.97	□□□□□ -1.93
SS18-223	ENST00000583595	ST20-AS1	Q8NBB2	130 aa		2.97	□□□□□ -1.93
SS18-223	ENST00000583595	RPL39L	Q96EH5	51 aa	Known RBP	2.97	□□□□□ -1.93
SS18-223	ENST00000583595	NDUFA12	Q9UI09	145 aa		2.97	□□□□□ -1.93
SS18-223	ENST00000583595	LINC00588	Q9Y4M8	146 aa		2.97	□□□□□ -1.93
SS18-223	ENST00000583595	UNC13C	Q8NB66	2214 aa		2.97	□□□□□ -1.93
SS18-223	ENST00000583595	DSCAML1	Q8TD84	2053 aa		2.97	□□□□□ -1.93
SS18-223	ENST00000583595	ANKRD11	Q6UB99	2663 aa	Predicted RBP	2.96	□□□□□ -1.93
SS18-223	ENST00000583595	USF3	Q68DE3	2245 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	SDK1	Q7Z5N4	2213 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	IGHV1-18	A0A0C4DH31	117 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	TRBV6-5	A0A0K0K1A5	114 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	C16orf90	A8MZG2	172 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595		E7EQL1	145 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	JMJD7-PLA2G4B	H0Y9G9	81 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595		H0YGX0	51 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595		I3L2K1	104 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	IGKV1-17	P01599	117 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	MGP	P08493	103 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	FAM229B	Q4G0N7	80 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	C10orf55	Q5SWW7	151 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	HCP5	Q6MZN7	132 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	SOSTDC1	Q6X4U4	206 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595		Q8TAT8	98 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	LEAP2	Q969E1	77 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	UBL5	Q9BZL1	73 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	BPESC1	Q9GZL8	116 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	C14orf132	Q9NPU4	83 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	SNURF	Q9Y675	71 aa		2.96	□□□□□ -1.94
SS18-223	ENST00000583595	BAHCC1	Q9P281	2608 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	DSCAM	O60469	2012 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	CACNA1E	Q15878	2313 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	IGKV1D-17	A0A075B6S4	117 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	SPTY2D1-AS1	A0A0U1RR47	76 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595		M0R378	163 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	UBE2L6	O14933	153 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	LECT2	O14960	151 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	NDUFA1	O15239	70 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	TFF1	P04155	84 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	IGLV7-43	P04211	117 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	CCL3	P10147	92 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	FUS	P35637	526 aa	Known RBP eCLIP	2.95	□□□□□ -1.94
SS18-223	ENST00000583595	LCE3E	Q5T5B0	92 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	ENHO	Q6UWT2	76 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	LINC00308	Q8TCZ7	52 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	LENEP	Q9Y5L5	61 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	FRY	Q5TBA9	3013 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	CFAP47	Q6ZTR5	3102 aa		2.95	□□□□□ -1.94
SS18-223	ENST00000583595	IGHV3-64	A0A075B6Q5	118 aa		2.94	□□□□□ -1.94
SS18-223	ENST00000583595	TRBV7-4	A0A0J9YYF1	115 aa		2.94	□□□□□ -1.94
SS18-223	ENST00000583595	BUB1B-PAK6	H3BSN5	160 aa		2.94	□□□□□ -1.94
SS18-223	ENST00000583595	ZNF73	O43830	326 aa	Predicted RBP	2.94	□□□□□ -1.94
SS18-223	ENST00000583595	RPL39	P62891	51 aa	Known RBP	2.94	□□□□□ -1.94
SS18-223	ENST00000583595	PHF5A	Q7RTV0	110 aa	Known RBP	2.94	□□□□□ -1.94
SS18-223	ENST00000583595	KRTAP11-1	Q8IUC1	163 aa		2.94	□□□□□ -1.94
SS18-223	ENST00000583595	ORMDL1	Q9P0S3	153 aa		2.94	□□□□□ -1.94
SS18-223	ENST00000583595	KLK12	Q9UKR0	248 aa		2.94	□□□□□ -1.94
SS18-223	ENST00000583595	DIDO1	Q9BTC0	2240 aa	Known RBP	2.94	□□□□□ -1.94
SS18-223	ENST00000583595	ESPL1	Q14674	2120 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595	FASN	P49327	2511 aa	Known RBP	2.93	□□□□□ -1.94
SS18-223	ENST00000583595	TRAV21	A0A0B4J279	112 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595		H3BQ85	93 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595		K7EIM0	57 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595	PRB1	P04280	392 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595	S100A4	P26447	101 aa	Known RBP	2.93	□□□□□ -1.94
SS18-223	ENST00000583595	LCA10	Q71F78	164 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595	ZNF625	Q96I27	306 aa	Predicted RBP	2.93	□□□□□ -1.94
SS18-223	ENST00000583595	ANAPC11	Q9NYG5	84 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595		S4R3C0	116 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595	KNTC1	P50748	2209 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595	ZNF407	Q9C0G0	2248 aa		2.93	□□□□□ -1.94
SS18-223	ENST00000583595	AKAP13	Q12802	2813 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	APC2	O95996	2303 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	ZZEF1	O43149	2961 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	ITPR1	Q14643	2758 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	hDV103S1	A0JD37	113 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595		A8MUN3	132 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	C10orf142	B7Z368	130 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	TMEM256-PLSCR3	K7ERE1	68 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	NCR3	O14931	201 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	CRP	P02741	224 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	CTSG	P08311	255 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595		Q8N6K4	173 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	ZFAND2A	Q8N6M9	145 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	WFDC9	Q8NEX5	89 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	TMEM254	Q8TBM7	123 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	LINC00167	Q96N53	147 aa		2.92	□□□□□ -1.94
SS18-223	ENST00000583595	INTS1	Q8N201	2190 aa	Known RBP	2.92	□□□□□ -1.94
SS18-223	ENST00000583595	ASCC3	Q8N3C0	2202 aa	Known RBP	2.92	□□□□□ -1.94
SS18-223	ENST00000583595	SPEG	Q15772	3267 aa		2.92	□□□□□ -1.94

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