RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 DPH3Q96FX2 82 aa-1.56□□□□□ -2.66
SS18-214ENST00000580003 MGST2Q99735 147 aa-1.56□□□□□ -2.66
SS18-214ENST00000580003 ARPC5O15511 151 aa-1.57□□□□□ -2.66
SS18-214ENST00000580003 DYNLRB1Q9NP97 96 aa-1.57□□□□□ -2.66
SS18-214ENST00000580003 FAM186AA6NE01 2351 aa-1.57□□□□□ -2.66
SS18-214ENST00000580003 POLA1P09884 1462 aaPredicted RBP-1.57□□□□□ -2.66
SS18-214ENST00000580003 KIF21AQ7Z4S6 1674 aa-1.58□□□□□ -2.66
SS18-214ENST00000580003 ZNF236Q9UL36 1845 aa-1.58□□□□□ -2.66
SS18-214ENST00000580003 LOC285095A0A1B0GVY8 99 aa-1.58□□□□□ -2.66
SS18-214ENST00000580003 H3BNG1 76 aa-1.58□□□□□ -2.66
SS18-214ENST00000580003 DR1Q01658 176 aa-1.58□□□□□ -2.66
SS18-214ENST00000580003 NDUFA4L2Q9NRX3 87 aa-1.58□□□□□ -2.66
SS18-214ENST00000580003 LINC01558Q9Y6Z2 57 aa-1.58□□□□□ -2.66
SS18-214ENST00000580003 MYOM3Q5VTT5 1437 aa-1.58□□□□□ -2.66
SS18-214ENST00000580003 ADAMTS12P58397 1594 aa-1.59□□□□□ -2.66
SS18-214ENST00000580003 MT1FP04733 61 aa-1.59□□□□□ -2.66
SS18-214ENST00000580003 ANP32BQ92688 251 aaKnown RBP-1.59□□□□□ -2.66
SS18-214ENST00000580003 PDCD10Q9BUL8 212 aa-1.59□□□□□ -2.66
SS18-214ENST00000580003 TLN2Q9Y4G6 2542 aa-1.59□□□□□ -2.66
SS18-214ENST00000580003 DNAJC13O75165 2243 aa-1.59□□□□□ -2.66
SS18-214ENST00000580003 MGAQ8IWI9 3026 aa-1.59□□□□□ -2.66
SS18-214ENST00000580003 DMDP11532 3685 aa-1.6□□□□□ -2.67
SS18-214ENST00000580003 SPEF2Q9C093 1822 aa-1.6□□□□□ -2.67
SS18-214ENST00000580003 K7EP34 96 aa-1.6□□□□□ -2.67
SS18-214ENST00000580003 HIST1H1DP16402 221 aaKnown RBP-1.6□□□□□ -2.67
SS18-214ENST00000580003 CENPEQ02224 2701 aa-1.6□□□□□ -2.67
SS18-214ENST00000580003 PTPN23Q9H3S7 1636 aa-1.6□□□□□ -2.67
SS18-214ENST00000580003 CDC42BPGQ6DT37 1551 aa-1.6□□□□□ -2.67
SS18-214ENST00000580003 IGLC7A0M8Q6 106 aa-1.61□□□□□ -2.67
SS18-214ENST00000580003 SMIM21Q3B7S5 101 aa-1.61□□□□□ -2.67
SS18-214ENST00000580003 KRTAP8-1Q8IUC2 63 aa-1.61□□□□□ -2.67
SS18-214ENST00000580003 Q8N8P6 123 aa-1.61□□□□□ -2.67
SS18-214ENST00000580003 DEFB105AQ8NG35 78 aa-1.61□□□□□ -2.67
SS18-214ENST00000580003 KNDC1Q76NI1 1749 aa-1.61□□□□□ -2.67
SS18-214ENST00000580003 ARAP2Q8WZ64 1704 aa-1.61□□□□□ -2.67
SS18-214ENST00000580003 FMN2Q9NZ56 1722 aa-1.61□□□□□ -2.67
SS18-214ENST00000580003 DOCK1Q14185 1865 aa-1.62□□□□□ -2.67
SS18-214ENST00000580003 SPEGQ15772 3267 aa-1.62□□□□□ -2.67
SS18-214ENST00000580003 RAPGEF6Q8TEU7 1601 aa-1.62□□□□□ -2.67
SS18-214ENST00000580003 CFTRP13569 1480 aa-1.63□□□□□ -2.67
SS18-214ENST00000580003 SMG6Q86US8 1419 aaKnown RBP-1.63□□□□□ -2.67
SS18-214ENST00000580003 TRBV7-3A0A075B6L6 115 aa-1.63□□□□□ -2.67
SS18-214ENST00000580003 TRBV7-4A0A0J9YYF1 115 aa-1.63□□□□□ -2.67
SS18-214ENST00000580003 PFDN5Q99471 154 aa-1.63□□□□□ -2.67
SS18-214ENST00000580003 RERGLQ9H628 205 aa-1.63□□□□□ -2.67
SS18-214ENST00000580003 S4R3F8 94 aa-1.63□□□□□ -2.67
SS18-214ENST00000580003 GRIN2AQ12879 1464 aa-1.63□□□□□ -2.67
SS18-214ENST00000580003 PATJQ8NI35 1801 aa-1.63□□□□□ -2.67
SS18-214ENST00000580003 DOCK2Q92608 1830 aa-1.63□□□□□ -2.67
SS18-214ENST00000580003 RIMS1Q86UR5 1692 aaKnown RBP-1.64□□□□□ -2.67
SS18-214ENST00000580003 CRYBG3Q68DQ2 2970 aa-1.64□□□□□ -2.67
SS18-214ENST00000580003 DCHS1Q96JQ0 3298 aa-1.64□□□□□ -2.67
SS18-214ENST00000580003 MGPP08493 103 aa-1.64□□□□□ -2.67
SS18-214ENST00000580003 TMEM263Q8WUH6 116 aaKnown RBP-1.64□□□□□ -2.67
SS18-214ENST00000580003 PAIP2BQ9ULR5 123 aaKnown RBP-1.64□□□□□ -2.67
SS18-214ENST00000580003 SERP1Q9Y6X1 66 aa-1.64□□□□□ -2.67
SS18-214ENST00000580003 EP400Q96L91 3159 aa-1.64□□□□□ -2.67
SS18-214ENST00000580003 NSD3Q9BZ95 1437 aa-1.65□□□□□ -2.67
SS18-214ENST00000580003 SFT2D2O95562 160 aa-1.65□□□□□ -2.67
SS18-214ENST00000580003 COX8AP10176 69 aa-1.65□□□□□ -2.67
SS18-214ENST00000580003 ASIPP42127 132 aa-1.65□□□□□ -2.67
SS18-214ENST00000580003 WDFY3Q8IZQ1 3526 aa-1.65□□□□□ -2.67
SS18-214ENST00000580003 ARHGEF12Q9NZN5 1544 aa-1.66□□□□□ -2.67
SS18-214ENST00000580003 SYS1-DBNDD2H3BUS1 97 aa-1.66□□□□□ -2.68
SS18-214ENST00000580003 PPP3R2Q96LZ3 170 aa-1.66□□□□□ -2.68
SS18-214ENST00000580003 PDE4DIPQ5VU43 2346 aa-1.66□□□□□ -2.68
SS18-214ENST00000580003 CEP152O94986 1710 aa-1.66□□□□□ -2.68
SS18-214ENST00000580003 CEP350Q5VT06 3117 aa-1.66□□□□□ -2.68
SS18-214ENST00000580003 KDM5AP29375 1690 aaKnown RBP-1.67□□□□□ -2.68
SS18-214ENST00000580003 C9orf92A6NGG3 77 aa-1.67□□□□□ -2.68
SS18-214ENST00000580003 HMGN4O00479 90 aa-1.67□□□□□ -2.68
SS18-214ENST00000580003 ARPC4P59998 168 aa-1.67□□□□□ -2.68
SS18-214ENST00000580003 FAIMQ9NVQ4 179 aa-1.67□□□□□ -2.68
SS18-214ENST00000580003 WDFY4Q6ZS81 3184 aa-1.67□□□□□ -2.68
SS18-214ENST00000580003 C9orf62Q8N4C0 152 aa-1.68□□□□□ -2.68
SS18-214ENST00000580003 USMG5Q96IX5 58 aa-1.68□□□□□ -2.68
SS18-214ENST00000580003 SNRNP25Q9BV90 132 aaKnown RBP-1.68□□□□□ -2.68
SS18-214ENST00000580003 NAA60Q9H7X0 242 aa-1.68□□□□□ -2.68
SS18-214ENST00000580003 TULP4Q9NRJ4 1543 aa-1.68□□□□□ -2.68
SS18-214ENST00000580003 MAP3K1Q13233 1512 aa-1.69□□□□□ -2.68
SS18-214ENST00000580003 WHAMMP3Q1A5X7 153 aa-1.69□□□□□ -2.68
SS18-214ENST00000580003 MRPL54Q6P161 138 aaKnown RBP-1.69□□□□□ -2.68
SS18-214ENST00000580003 CFAP54Q96N23 3096 aa-1.7□□□□□ -2.68
SS18-214ENST00000580003 CEP290O15078 2479 aa-1.7□□□□□ -2.68
SS18-214ENST00000580003 DEFB110Q30KQ9 67 aa-1.7□□□□□ -2.68
SS18-214ENST00000580003 LSM10Q969L4 123 aaKnown RBP-1.7□□□□□ -2.68
SS18-214ENST00000580003 SETBP1Q9Y6X0 1596 aa-1.7□□□□□ -2.68
SS18-214ENST00000580003 SLIT1O75093 1534 aa-1.71□□□□□ -2.68
SS18-214ENST00000580003 ANKRD50Q9ULJ7 1429 aa-1.71□□□□□ -2.68
SS18-214ENST00000580003 IFNGP01579 166 aa-1.71□□□□□ -2.68
SS18-214ENST00000580003 H1FX-AS1Q4G0G2 97 aa-1.71□□□□□ -2.68
SS18-214ENST00000580003 PAPPA2Q9BXP8 1791 aa-1.72□□□□□ -2.68
SS18-214ENST00000580003 SSSCA1O60232 199 aa-1.72□□□□□ -2.68
SS18-214ENST00000580003 SPTAN1Q13813 2472 aaKnown RBP-1.72□□□□□ -2.68
SS18-214ENST00000580003 MUC3AQ02505 3323 aa-1.72□□□□□ -2.69
SS18-214ENST00000580003 FRYLO94915 3013 aa-1.72□□□□□ -2.69
SS18-214ENST00000580003 DEFB4AO15263 64 aa-1.73□□□□□ -2.69
SS18-214ENST00000580003 SPANXDQ9BXN6 97 aa-1.73□□□□□ -2.69
SS18-214ENST00000580003 VPS13CQ709C8 3753 aa-1.73□□□□□ -2.69
SS18-214ENST00000580003 H0YGG7 62 aa-1.74□□□□□ -2.69
Retrieved 100 of 20,778 RNA–protein pairs in 355.5 ms