RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 KRTAP10-4P60372 401 aaPredicted RBP8.6□□□□□ -1.03
CIITA-210ENST00000575513 KIAA0087Q14695 138 aa8.6□□□□□ -1.03
CIITA-210ENST00000575513 MAJINQ3KP22 176 aa8.6□□□□□ -1.03
CIITA-210ENST00000575513 IFI27L1Q96BM0 104 aa8.6□□□□□ -1.03
CIITA-210ENST00000575513 IGKV2-24A0A0C4DH68 120 aa8.59□□□□□ -1.03
CIITA-210ENST00000575513 IGLC3P0DOY3 106 aa8.59□□□□□ -1.03
CIITA-210ENST00000575513 PTTG1IPP53801 180 aa8.59□□□□□ -1.03
CIITA-210ENST00000575513 CDKN2A-AS1Q9UH64 79 aa8.59□□□□□ -1.03
CIITA-210ENST00000575513 TRAV12-1A0A0B4J245 112 aa8.58□□□□□ -1.04
CIITA-210ENST00000575513 NDUFA6P56556 154 aa8.58□□□□□ -1.04
CIITA-210ENST00000575513 COA6Q5JTJ3 125 aaKnown RBP8.58□□□□□ -1.04
CIITA-210ENST00000575513 LINC00469Q8N7U9 141 aa8.58□□□□□ -1.04
CIITA-210ENST00000575513 STPG4Q8N801 248 aa8.58□□□□□ -1.04
CIITA-210ENST00000575513 LEPROTL1O95214 131 aa8.57□□□□□ -1.04
CIITA-210ENST00000575513 TLX1NBP0CAT3 122 aa8.57□□□□□ -1.04
CIITA-210ENST00000575513 RPL37AP61513 92 aaKnown RBP8.57□□□□□ -1.04
CIITA-210ENST00000575513 TRBV30A0A0K0K1B3 111 aa8.56□□□□□ -1.04
CIITA-210ENST00000575513 UNQ6190/PRO20217Q6UXQ8 127 aa8.56□□□□□ -1.04
CIITA-210ENST00000575513 Q8IZM0 81 aa8.56□□□□□ -1.04
CIITA-210ENST00000575513 PACRGQ96M98 296 aaPredicted RBP8.56□□□□□ -1.04
CIITA-210ENST00000575513 HSPB8Q9UJY1 196 aa8.56□□□□□ -1.04
CIITA-210ENST00000575513 SMIM1B2RUZ4 78 aa8.55□□□□□ -1.04
CIITA-210ENST00000575513 H3BRM9 83 aa8.55□□□□□ -1.04
CIITA-210ENST00000575513 GAGE2BQ13066 116 aa8.55□□□□□ -1.04
CIITA-210ENST00000575513 C10orf25Q5T742 122 aa8.55□□□□□ -1.04
CIITA-210ENST00000575513 C7orf33Q8WU49 177 aa8.55□□□□□ -1.04
CIITA-210ENST00000575513 MYCBP2O75592 4640 aa8.54□□□□□ -1.04
CIITA-210ENST00000575513 C11orf86A6NJI1 115 aa8.54□□□□□ -1.04
CIITA-210ENST00000575513 PRSS2P07478 247 aa8.54□□□□□ -1.04
CIITA-210ENST00000575513 ZNF22P17026 224 aaPredicted RBP8.54□□□□□ -1.04
CIITA-210ENST00000575513 C6orf226Q5I0X4 101 aa8.54□□□□□ -1.04
CIITA-210ENST00000575513 C6orf48Q9UBA6 75 aa8.54□□□□□ -1.04
CIITA-210ENST00000575513 CHTOPQ9Y3Y2 248 aaKnown RBP8.54□□□□□ -1.04
CIITA-210ENST00000575513 FLG2Q5D862 2391 aaPredicted RBP8.54□□□□□ -1.04
CIITA-210ENST00000575513 F8VRH5 84 aa8.53□□□□□ -1.04
CIITA-210ENST00000575513 CKS1BP61024 79 aa8.53□□□□□ -1.04
CIITA-210ENST00000575513 RPL18AQ02543 176 aaKnown RBP8.53□□□□□ -1.04
CIITA-210ENST00000575513 FABP4P15090 132 aa8.52□□□□□ -1.05
CIITA-210ENST00000575513 CXCL5P42830 114 aa8.52□□□□□ -1.05
CIITA-210ENST00000575513 C2orf82Q6UX34 121 aa8.52□□□□□ -1.05
CIITA-210ENST00000575513 IGLV5-39A0A0G2JS06 123 aa8.51□□□□□ -1.05
CIITA-210ENST00000575513 NDUFC2-KCTD14E9PQ53 114 aa8.51□□□□□ -1.05
CIITA-210ENST00000575513 SPINK8P0C7L1 97 aa8.51□□□□□ -1.05
CIITA-210ENST00000575513 ODF1Q14990 250 aa8.51□□□□□ -1.05
CIITA-210ENST00000575513 Q6ZRP5 223 aa8.51□□□□□ -1.05
CIITA-210ENST00000575513 TOMM7Q9P0U1 55 aa8.51□□□□□ -1.05
CIITA-210ENST00000575513 A0A1W2PNN7 141 aa8.5□□□□□ -1.05
CIITA-210ENST00000575513 COX7B2Q8TF08 81 aa8.5□□□□□ -1.05
CIITA-210ENST00000575513 KRTAP29-1A8MX34 341 aaPredicted RBP8.49□□□□□ -1.05
CIITA-210ENST00000575513 C9orf116Q5BN46 136 aaPredicted RBP8.49□□□□□ -1.05
CIITA-210ENST00000575513 TMEM170BQ5T4T1 132 aa8.49□□□□□ -1.05
CIITA-210ENST00000575513 MAP1LC3CQ9BXW4 147 aa8.49□□□□□ -1.05
CIITA-210ENST00000575513 PKHD1L1Q86WI1 4243 aa8.48□□□□□ -1.05
CIITA-210ENST00000575513 DMBT1Q9UGM3 2413 aaPredicted RBP8.48□□□□□ -1.05
CIITA-210ENST00000575513 TMEM223A0PJW6 202 aa8.47□□□□□ -1.05
CIITA-210ENST00000575513 H0Y8G0 127 aa8.47□□□□□ -1.05
CIITA-210ENST00000575513 OXTP01178 125 aa8.47□□□□□ -1.05
CIITA-210ENST00000575513 PLNP26678 52 aa8.47□□□□□ -1.05
CIITA-210ENST00000575513 SYS1-DBNDD2H3BUS1 97 aa8.46□□□□□ -1.06
CIITA-210ENST00000575513 PRR3P79522 188 aaKnown RBP8.46□□□□□ -1.06
CIITA-210ENST00000575513 GAGE2EQ4V326 116 aa8.46□□□□□ -1.06
CIITA-210ENST00000575513 GAGE2DQ9UEU5 116 aa8.46□□□□□ -1.06
CIITA-210ENST00000575513 DPM2O94777 84 aa8.45□□□□□ -1.06
CIITA-210ENST00000575513 HNRNPA3P51991 378 aaKnown RBP8.45□□□□□ -1.06
CIITA-210ENST00000575513 PET117Q6UWS5 81 aa8.45□□□□□ -1.06
CIITA-210ENST00000575513 J3QL48 77 aa8.43□□□□□ -1.06
CIITA-210ENST00000575513 IGKCP01834 107 aa8.43□□□□□ -1.06
CIITA-210ENST00000575513 C9orf129Q5T035 196 aaKnown RBP8.43□□□□□ -1.06
CIITA-210ENST00000575513 LINC01545Q5VT33 79 aa8.43□□□□□ -1.06
CIITA-210ENST00000575513 SFTA2Q6UW10 78 aa8.43□□□□□ -1.06
CIITA-210ENST00000575513 C3orf79P0CE67 100 aa8.42□□□□□ -1.06
CIITA-210ENST00000575513 PMCHL2Q9BQD1 86 aa8.42□□□□□ -1.06
CIITA-210ENST00000575513 LRP1Q07954 4544 aaKnown RBP8.42□□□□□ -1.06
CIITA-210ENST00000575513 FAT3Q8TDW7 4589 aa8.41□□□□□ -1.06
CIITA-210ENST00000575513 FAM168BA1KXE4 195 aa8.41□□□□□ -1.06
CIITA-210ENST00000575513 PHF5AQ7RTV0 110 aaKnown RBP8.41□□□□□ -1.06
CIITA-210ENST00000575513 HIST3H2BBQ8N257 126 aa8.41□□□□□ -1.06
CIITA-210ENST00000575513 ZNF625Q96I27 306 aaPredicted RBP8.41□□□□□ -1.06
CIITA-210ENST00000575513 HERC1Q15751 4861 aa8.41□□□□□ -1.06
CIITA-210ENST00000575513 S100A6P06703 90 aa8.4□□□□□ -1.06
CIITA-210ENST00000575513 HERVK_113P61574 105 aa8.4□□□□□ -1.06
CIITA-210ENST00000575513 SRSF9Q13242 221 aaKnown RBP eCLIP8.4□□□□□ -1.06
CIITA-210ENST00000575513 SPINK6Q6UWN8 80 aa8.4□□□□□ -1.06
CIITA-210ENST00000575513 KRTAP7-1Q8IUC3 87 aa8.4□□□□□ -1.06
CIITA-210ENST00000575513 KRTDAPP60985 99 aa8.39□□□□□ -1.07
CIITA-210ENST00000575513 COX17Q14061 63 aa8.39□□□□□ -1.07
CIITA-210ENST00000575513 FAM19A5Q7Z5A7 132 aaPredicted RBP8.39□□□□□ -1.07
CIITA-210ENST00000575513 PLEKHB2Q96CS7 222 aa8.39□□□□□ -1.07
CIITA-210ENST00000575513 PSORS1C2Q9UIG4 136 aa8.39□□□□□ -1.07
CIITA-210ENST00000575513 M0QXV9 152 aa8.38□□□□□ -1.07
CIITA-210ENST00000575513 LEPROTO15243 131 aa8.38□□□□□ -1.07
CIITA-210ENST00000575513 S100A2P29034 98 aa8.38□□□□□ -1.07
CIITA-210ENST00000575513 HIST1H2BLQ99880 126 aa8.38□□□□□ -1.07
CIITA-210ENST00000575513 XAGE1AQ9HD64 81 aa8.38□□□□□ -1.07
CIITA-210ENST00000575513 PLA2G2DQ9UNK4 145 aa8.38□□□□□ -1.07
CIITA-210ENST00000575513 C20orf202A1L168 122 aa8.37□□□□□ -1.07
CIITA-210ENST00000575513 TP73-AS1Q9UF72 201 aa8.37□□□□□ -1.07
CIITA-210ENST00000575513 ERG28Q9UKR5 140 aa8.37□□□□□ -1.07
CIITA-210ENST00000575513 C5orf52A6NGY3 159 aa8.36□□□□□ -1.07
CIITA-210ENST00000575513 AKR1D1P51857 326 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms