RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 COX7B2Q8TF08 81 aa6.11□□□□□ -1.43
CCDC40-214ENST00000575431 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.11□□□□□ -1.43
CCDC40-214ENST00000575431 IGKV2-24A0A0C4DH68 120 aa6.1□□□□□ -1.43
CCDC40-214ENST00000575431 SPINK8P0C7L1 97 aa6.1□□□□□ -1.43
CCDC40-214ENST00000575431 C6orf48Q9UBA6 75 aa6.1□□□□□ -1.43
CCDC40-214ENST00000575431 DYNC1H1Q14204 4646 aaKnown RBP6.1□□□□□ -1.43
CCDC40-214ENST00000575431 A0A096LNI7 61 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 IGLV5-39A0A0G2JS06 123 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 EPM2AB3EWF7 344 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 PLNP26678 52 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 PTTG1IPP53801 180 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 ODF1Q14990 250 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 MAJINQ3KP22 176 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 C10orf25Q5T742 122 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 C2orf82Q6UX34 121 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 PLAC8Q9NZF1 115 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 KIAA1109Q2LD37 5005 aa6.09□□□□□ -1.43
CCDC40-214ENST00000575431 A0A087WYN8 130 aa6.08□□□□□ -1.44
CCDC40-214ENST00000575431 NDUFC2-KCTD14E9PQ53 114 aa6.08□□□□□ -1.44
CCDC40-214ENST00000575431 H0Y8G0 127 aa6.08□□□□□ -1.44
CCDC40-214ENST00000575431 CHTF8P0CG12 524 aa6.08□□□□□ -1.44
CCDC40-214ENST00000575431 RPL18AQ02543 176 aaKnown RBP6.08□□□□□ -1.44
CCDC40-214ENST00000575431 GAGE2BQ13066 116 aa6.08□□□□□ -1.44
CCDC40-214ENST00000575431 STPG4Q8N801 248 aa6.08□□□□□ -1.44
CCDC40-214ENST00000575431 TMEM223A0PJW6 202 aa6.07□□□□□ -1.44
CCDC40-214ENST00000575431 SYS1-DBNDD2H3BUS1 97 aa6.07□□□□□ -1.44
CCDC40-214ENST00000575431 PANO1I0J062 215 aa6.07□□□□□ -1.44
CCDC40-214ENST00000575431 DPM2O94777 84 aa6.07□□□□□ -1.44
CCDC40-214ENST00000575431 SMR3BP02814 79 aaPredicted RBP6.07□□□□□ -1.44
CCDC40-214ENST00000575431 PLA2G1BP04054 148 aaKnown RBP6.07□□□□□ -1.44
CCDC40-214ENST00000575431 HAMPP81172 84 aa6.07□□□□□ -1.44
CCDC40-214ENST00000575431 PKHD1P08F94 4074 aa6.06□□□□□ -1.44
CCDC40-214ENST00000575431 PET117Q6UWS5 81 aa6.06□□□□□ -1.44
CCDC40-214ENST00000575431 Q6ZRP5 223 aa6.06□□□□□ -1.44
CCDC40-214ENST00000575431 LINC00528Q8N1L1 170 aa6.06□□□□□ -1.44
CCDC40-214ENST00000575431 DNAH5Q8TE73 4624 aa6.05□□□□□ -1.44
CCDC40-214ENST00000575431 IGKCP01834 107 aa6.05□□□□□ -1.44
CCDC40-214ENST00000575431 S100A6P06703 90 aa6.05□□□□□ -1.44
CCDC40-214ENST00000575431 AKR1D1P51857 326 aa6.05□□□□□ -1.44
CCDC40-214ENST00000575431 HERVK_113P61574 105 aa6.05□□□□□ -1.44
CCDC40-214ENST00000575431 COX17Q14061 63 aa6.05□□□□□ -1.44
CCDC40-214ENST00000575431 Q5VSD8 79 aa6.05□□□□□ -1.44
CCDC40-214ENST00000575431 C7orf33Q8WU49 177 aa6.05□□□□□ -1.44
CCDC40-214ENST00000575431 RYR1P21817 5038 aa6.04□□□□□ -1.44
CCDC40-214ENST00000575431 LRP1BQ9NZR2 4599 aa6.04□□□□□ -1.44
CCDC40-214ENST00000575431 LINC00587B1AMM8 73 aa6.04□□□□□ -1.44
CCDC40-214ENST00000575431 GAGE2EQ4V326 116 aa6.04□□□□□ -1.44
CCDC40-214ENST00000575431 GAGE2DQ9UEU5 116 aa6.04□□□□□ -1.44
CCDC40-214ENST00000575431 C20orf202A1L168 122 aa6.03□□□□□ -1.44
CCDC40-214ENST00000575431 S100A2P29034 98 aa6.03□□□□□ -1.44
CCDC40-214ENST00000575431 HERV-K104P63124 156 aa6.03□□□□□ -1.44
CCDC40-214ENST00000575431 C9orf116Q5BN46 136 aaPredicted RBP6.03□□□□□ -1.44
CCDC40-214ENST00000575431 LINC01545Q5VT33 79 aa6.03□□□□□ -1.44
CCDC40-214ENST00000575431 PLEKHB2Q96CS7 222 aa6.03□□□□□ -1.44
CCDC40-214ENST00000575431 LEPROTO15243 131 aa6.02□□□□□ -1.45
CCDC40-214ENST00000575431 C3orf79P0CE67 100 aa6.02□□□□□ -1.45
CCDC40-214ENST00000575431 ZNF625Q96I27 306 aaPredicted RBP6.02□□□□□ -1.45
CCDC40-214ENST00000575431 PMCHL2Q9BQD1 86 aa6.02□□□□□ -1.45
CCDC40-214ENST00000575431 ERG28Q9UKR5 140 aa6.02□□□□□ -1.45
CCDC40-214ENST00000575431 HERC2O95714 4834 aa6.01□□□□□ -1.45
CCDC40-214ENST00000575431 MYMXA0A1B0GTQ4 84 aa6.01□□□□□ -1.45
CCDC40-214ENST00000575431 A0A1W2PNN7 141 aa6.01□□□□□ -1.45
CCDC40-214ENST00000575431 NMUP48645 174 aa6.01□□□□□ -1.45
CCDC40-214ENST00000575431 KRTDAPP60985 99 aa6.01□□□□□ -1.45
CCDC40-214ENST00000575431 RPL37AP61513 92 aaKnown RBP6.01□□□□□ -1.45
CCDC40-214ENST00000575431 J3QQQ9 107 aa6□□□□□ -1.45
CCDC40-214ENST00000575431 LGALS3P17931 250 aaKnown RBP6□□□□□ -1.45
CCDC40-214ENST00000575431 PFN2P35080 140 aa6□□□□□ -1.45
CCDC40-214ENST00000575431 C9orf129Q5T035 196 aaKnown RBP6□□□□□ -1.45
CCDC40-214ENST00000575431 HIST3H2BBQ8N257 126 aa6□□□□□ -1.45
CCDC40-214ENST00000575431 KRTAP17-1Q9BYP8 105 aa6□□□□□ -1.45
CCDC40-214ENST00000575431 NDUFA12Q9UI09 145 aa6□□□□□ -1.45
CCDC40-214ENST00000575431 E9PLD3 99 aa5.99□□□□□ -1.45
CCDC40-214ENST00000575431 HIST1H2BLQ99880 126 aa5.99□□□□□ -1.45
CCDC40-214ENST00000575431 KRTAP4-5Q9BYR2 181 aa5.99□□□□□ -1.45
CCDC40-214ENST00000575431 XAGE1AQ9HD64 81 aa5.99□□□□□ -1.45
CCDC40-214ENST00000575431 PLA2G2DQ9UNK4 145 aa5.99□□□□□ -1.45
CCDC40-214ENST00000575431 APOBP04114 4563 aaKnown RBP5.98□□□□□ -1.45
CCDC40-214ENST00000575431 INAFM2P0DMQ5 153 aa5.98□□□□□ -1.45
CCDC40-214ENST00000575431 LINC00158P58513 81 aa5.98□□□□□ -1.45
CCDC40-214ENST00000575431 SNRPEP62304 92 aaKnown RBP5.98□□□□□ -1.45
CCDC40-214ENST00000575431 LBHQ53QV2 105 aaPredicted RBP5.98□□□□□ -1.45
CCDC40-214ENST00000575431 MEIG1Q5JSS6 88 aa5.98□□□□□ -1.45
CCDC40-214ENST00000575431 FAM19A5Q7Z5A7 132 aaPredicted RBP5.98□□□□□ -1.45
CCDC40-214ENST00000575431 TP73-AS1Q9UF72 201 aa5.98□□□□□ -1.45
CCDC40-214ENST00000575431 FAM168BA1KXE4 195 aa5.97□□□□□ -1.45
CCDC40-214ENST00000575431 C5orf52A6NGY3 159 aa5.97□□□□□ -1.45
CCDC40-214ENST00000575431 M0QXV9 152 aa5.97□□□□□ -1.45
CCDC40-214ENST00000575431 RPL24P83731 157 aaKnown RBP5.97□□□□□ -1.45
CCDC40-214ENST00000575431 SND1-IT1Q9HBX3 110 aa5.97□□□□□ -1.45
CCDC40-214ENST00000575431 KRTAP10-4P60372 401 aaPredicted RBP5.96□□□□□ -1.46
CCDC40-214ENST00000575431 PHF5AQ7RTV0 110 aaKnown RBP5.96□□□□□ -1.46
CCDC40-214ENST00000575431 IGLV5-37A0A075B6J1 123 aa5.95□□□□□ -1.46
CCDC40-214ENST00000575431 TSPEAR-AS2P59090 65 aa5.95□□□□□ -1.46
CCDC40-214ENST00000575431 UBE2BP63146 152 aa5.95□□□□□ -1.46
CCDC40-214ENST00000575431 PRR3P79522 188 aaKnown RBP5.95□□□□□ -1.46
CCDC40-214ENST00000575431 SERTAD4-AS1Q5TG53 156 aa5.95□□□□□ -1.46
CCDC40-214ENST00000575431 MRPL55Q7Z7F7 128 aaKnown RBP5.95□□□□□ -1.46
CCDC40-214ENST00000575431 KRTAP7-1Q8IUC3 87 aa5.95□□□□□ -1.46
CCDC40-214ENST00000575431 NKAPP1Q8N9T2 125 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms