RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 SERP2Q8N6R1 65 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 SPTSSBQ8NFR3 76 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 TMEM254Q8TBM7 123 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 REV3LO60673 3130 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 LAMA3Q16787 3333 aa1.96□□□□□ -2.1
NUP88-209ENST00000574855 CACNA1GO43497 2377 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 DIDO1Q9BTC0 2240 aaKnown RBP1.95□□□□□ -2.1
NUP88-209ENST00000574855 XIRP2A4UGR9 3374 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 RANBP2P49792 3224 aaKnown RBP1.95□□□□□ -2.1
NUP88-209ENST00000574855 TMSB15BA0A087X1C1 80 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 TRAV10A0A0B4J240 114 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 A0A1B0GUT8 65 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 HIGD1CA8MV81 97 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 H3BUA1 57 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 IGKV1-17P01599 117 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 APELAP0DMC3 54 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 KLK9Q2XQG4 91 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 LINC00483Q53H64 154 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 PSMG4Q5JS54 123 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 Q86TA4 180 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 Q8N6K4 173 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 C9orf163Q8N9P6 203 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 USMG5Q96IX5 58 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 FAM103A1Q9BTL3 118 aaKnown RBP1.95□□□□□ -2.1
NUP88-209ENST00000574855 MRPL36Q9P0J6 103 aaKnown RBP1.95□□□□□ -2.1
NUP88-209ENST00000574855 KLK9Q9UKQ9 250 aa1.95□□□□□ -2.1
NUP88-209ENST00000574855 URB1O60287 2271 aaKnown RBP1.94□□□□□ -2.1
NUP88-209ENST00000574855 USF3Q68DE3 2245 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 DOCK11Q5JSL3 2073 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 OTOGLQ3ZCN5 2332 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 TRAV13-2A0A0B4J235 113 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 TRAV12-1A0A0B4J245 112 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 TRBV10-3A0A0K0K1G6 114 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 FAM223BA6NKX1 122 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 HCG22E2RYF7 251 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 F2Z2F3 143 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 SYS1-DBNDD2H3BUS1 97 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 LEPROTL1O95214 131 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 CTSGP08311 255 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 KRTAP26-1Q6PEX3 210 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 LYPD5Q6UWN5 251 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 FAM223AQ8IWN6 122 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 C18orf32Q8TCD1 76 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 CCL19Q99731 98 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 BPESC1Q9GZL8 116 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 NXT2Q9NPJ8 142 aaKnown RBP1.94□□□□□ -2.1
NUP88-209ENST00000574855 LENEPQ9Y5L5 61 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 R4GN34 69 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 SZT2Q5T011 3432 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 UNC80Q8N2C7 3258 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 DNAH14Q0VDD8 3507 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 FAM186AA6NE01 2351 aa1.94□□□□□ -2.1
NUP88-209ENST00000574855 SPTBN5Q9NRC6 3674 aaKnown RBP1.93□□□□□ -2.1
NUP88-209ENST00000574855 NDUFA4O00483 81 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 C3orf79P0CE67 100 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 PRB3Q04118 309 aaPredicted RBP1.93□□□□□ -2.1
NUP88-209ENST00000574855 SPATA45Q537H7 98 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 C5orf56Q8N8D9 126 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 HIGD2AQ9BW72 106 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 CYP4F30PQ9H0H9 118 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 CDC42SE1Q9NRR8 79 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 HIGD1BQ9P298 99 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 ZGRF1Q86YA3 2104 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 CADP27708 2225 aa1.93□□□□□ -2.1
NUP88-209ENST00000574855 NCOR1O75376 2440 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 CACNA1HO95180 2353 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 MUC21A0A140T8X8 626 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 LINC01549A6NIU2 74 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 H3BUT2 72 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 M0R3E3 92 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 PSCAO43653 123 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 NDUFC1O43677 76 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 PPP1R17O96001 155 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 ARMS2P0C7Q2 107 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 COX6B1P14854 86 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 GDF5OSQ5U4N7 250 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 SPINT4Q6UDR6 99 aa1.92□□□□□ -2.1
NUP88-209ENST00000574855 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.92□□□□□ -2.1
NUP88-209ENST00000574855 LINC00322Q6ZN03 302 aaPredicted RBP1.92□□□□□ -2.1
NUP88-209ENST00000574855 EP300Q09472 2414 aaPredicted RBP1.91□□□□□ -2.1
NUP88-209ENST00000574855 ICE1Q9Y2F5 2266 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 IGKV2-40A0A087WW87 121 aaPredicted RBP1.91□□□□□ -2.1
NUP88-209ENST00000574855 TRAV21A0A0B4J279 112 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 TRAV40A0A0B4J280 105 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 A0A1W2PNM2 257 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 C2orf70A6NJV1 201 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 D6R8Y8 96 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 G3V318 75 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 H3BUX3 64 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 H7BZZ5 65 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 K7EMI3 77 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 IGKV2D-40P01614 121 aaPredicted RBP1.91□□□□□ -2.1
NUP88-209ENST00000574855 CRIP1P50238 77 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 MOBPQ13875 183 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 C2orf82Q6UX34 121 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 ODF3Q96PU9 254 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 Q9BRP9 147 aa1.91□□□□□ -2.1
NUP88-209ENST00000574855 TIMM8BQ9Y5J9 83 aaPredicted RBP1.91□□□□□ -2.1
NUP88-209ENST00000574855 PTPRZ1P23471 2315 aaPredicted RBP1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms