RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 IFI27L1Q96BM0 104 aa10.04□□□□□ -0.8
CHD3-215ENST00000572750 C6orf48Q9UBA6 75 aa10.04□□□□□ -0.8
CHD3-215ENST00000572750 PKIGQ9Y2B9 76 aa10.04□□□□□ -0.8
CHD3-215ENST00000572750 A0A087WYN8 130 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 F8WDY8 70 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST1H2BKO60814 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST1H2BJP06899 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 PRSS2P07478 247 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST1H2BOP23527 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST1H2BBP33778 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST1H2BDP58876 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST1H2BCP62807 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 RPL18AQ02543 176 aaKnown RBP10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST2H2BEQ16778 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.03□□□□□ -0.8
CHD3-215ENST00000572750 Q8IZM0 81 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST1H2BHQ93079 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 DPH3Q96FX2 82 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST1H2BNQ99877 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 HIST1H2BMQ99879 126 aa10.03□□□□□ -0.8
CHD3-215ENST00000572750 FAM229AH3BQW9 127 aa10.02□□□□□ -0.81
CHD3-215ENST00000572750 S100A1P23297 94 aa10.02□□□□□ -0.81
CHD3-215ENST00000572750 PTTG1IPP53801 180 aa10.02□□□□□ -0.81
CHD3-215ENST00000572750 GAGE2BQ13066 116 aa10.02□□□□□ -0.81
CHD3-215ENST00000572750 C11orf86A6NJI1 115 aa10.01□□□□□ -0.81
CHD3-215ENST00000572750 ZNF22P17026 224 aaPredicted RBP10.01□□□□□ -0.81
CHD3-215ENST00000572750 RNF151Q2KHN1 245 aa10.01□□□□□ -0.81
CHD3-215ENST00000572750 CHTOPQ9Y3Y2 248 aaKnown RBP10.01□□□□□ -0.81
CHD3-215ENST00000572750 H0Y8G0 127 aa10□□□□□ -0.81
CHD3-215ENST00000572750 H3BRM9 83 aa10□□□□□ -0.81
CHD3-215ENST00000572750 LEPROTL1O95214 131 aa10□□□□□ -0.81
CHD3-215ENST00000572750 CKS1BP61024 79 aa10□□□□□ -0.81
CHD3-215ENST00000572750 C6orf226Q5I0X4 101 aa10□□□□□ -0.81
CHD3-215ENST00000572750 STPG4Q8N801 248 aa10□□□□□ -0.81
CHD3-215ENST00000572750 PLAC8Q9NZF1 115 aa10□□□□□ -0.81
CHD3-215ENST00000572750 TRAV12-1A0A0B4J245 112 aa9.99□□□□□ -0.81
CHD3-215ENST00000572750 TRBV30A0A0K0K1B3 111 aa9.99□□□□□ -0.81
CHD3-215ENST00000572750 C9orf116Q5BN46 136 aaPredicted RBP9.99□□□□□ -0.81
CHD3-215ENST00000572750 COX7B2Q8TF08 81 aa9.99□□□□□ -0.81
CHD3-215ENST00000572750 LINC00474Q9P2X8 69 aa9.99□□□□□ -0.81
CHD3-215ENST00000572750 LRP1Q07954 4544 aaKnown RBP9.98□□□□□ -0.81
CHD3-215ENST00000572750 FABP4P15090 132 aa9.98□□□□□ -0.81
CHD3-215ENST00000572750 TMEM170BQ5T4T1 132 aa9.98□□□□□ -0.81
CHD3-215ENST00000572750 Q6ZRP5 223 aa9.97□□□□□ -0.81
CHD3-215ENST00000572750 IGLV5-39A0A0G2JS06 123 aa9.96□□□□□ -0.82
CHD3-215ENST00000572750 F8VRH5 84 aa9.96□□□□□ -0.82
CHD3-215ENST00000572750 TLX1NBP0CAT3 122 aa9.96□□□□□ -0.82
CHD3-215ENST00000572750 HSPB8Q9UJY1 196 aa9.96□□□□□ -0.82
CHD3-215ENST00000572750 PKHD1L1Q86WI1 4243 aa9.96□□□□□ -0.82
CHD3-215ENST00000572750 PLA2G1BP04054 148 aaKnown RBP9.95□□□□□ -0.82
CHD3-215ENST00000572750 CXCL5P42830 114 aa9.95□□□□□ -0.82
CHD3-215ENST00000572750 ODF1Q14990 250 aa9.95□□□□□ -0.82
CHD3-215ENST00000572750 GAGE2EQ4V326 116 aa9.95□□□□□ -0.82
CHD3-215ENST00000572750 GAGE2DQ9UEU5 116 aa9.95□□□□□ -0.82
CHD3-215ENST00000572750 NDUFC2-KCTD14E9PQ53 114 aa9.94□□□□□ -0.82
CHD3-215ENST00000572750 RPL37AP61513 92 aaKnown RBP9.94□□□□□ -0.82
CHD3-215ENST00000572750 A0A1W2PNN7 141 aa9.93□□□□□ -0.82
CHD3-215ENST00000572750 J3QL48 77 aa9.93□□□□□ -0.82
CHD3-215ENST00000572750 KRTAP10-4P60372 401 aaPredicted RBP9.93□□□□□ -0.82
CHD3-215ENST00000572750 FAM168BA1KXE4 195 aa9.92□□□□□ -0.82
CHD3-215ENST00000572750 TMEM223A0PJW6 202 aa9.91□□□□□ -0.82
CHD3-215ENST00000572750 PMCHL2Q9BQD1 86 aa9.91□□□□□ -0.82
CHD3-215ENST00000572750 C7orf33Q8WU49 177 aa9.9□□□□□ -0.82
CHD3-215ENST00000572750 MAP1LC3CQ9BXW4 147 aa9.9□□□□□ -0.82
CHD3-215ENST00000572750 COA6Q5JTJ3 125 aaKnown RBP9.89□□□□□ -0.83
CHD3-215ENST00000572750 C9orf129Q5T035 196 aaKnown RBP9.89□□□□□ -0.83
CHD3-215ENST00000572750 FAM19A5Q7Z5A7 132 aaPredicted RBP9.89□□□□□ -0.83
CHD3-215ENST00000572750 PLNP26678 52 aa9.88□□□□□ -0.83
CHD3-215ENST00000572750 XAGE1AQ9HD64 81 aa9.88□□□□□ -0.83
CHD3-215ENST00000572750 FAT3Q8TDW7 4589 aa9.87□□□□□ -0.83
CHD3-215ENST00000572750 DPM2O94777 84 aa9.86□□□□□ -0.83
CHD3-215ENST00000572750 PHF5AQ7RTV0 110 aaKnown RBP9.86□□□□□ -0.83
CHD3-215ENST00000572750 KRTAP7-1Q8IUC3 87 aa9.86□□□□□ -0.83
CHD3-215ENST00000572750 ZNF625Q96I27 306 aaPredicted RBP9.86□□□□□ -0.83
CHD3-215ENST00000572750 SYS1-DBNDD2H3BUS1 97 aa9.85□□□□□ -0.83
CHD3-215ENST00000572750 IGKCP01834 107 aa9.85□□□□□ -0.83
CHD3-215ENST00000572750 HNRNPA3P51991 378 aaKnown RBP9.85□□□□□ -0.83
CHD3-215ENST00000572750 PRR3P79522 188 aaKnown RBP9.85□□□□□ -0.83
CHD3-215ENST00000572750 PFN2P35080 140 aa9.84□□□□□ -0.83
CHD3-215ENST00000572750 SERTAD4-AS1Q5TG53 156 aa9.84□□□□□ -0.83
CHD3-215ENST00000572750 ERG28Q9UKR5 140 aa9.84□□□□□ -0.83
CHD3-215ENST00000572750 M0QXV9 152 aa9.83□□□□□ -0.84
CHD3-215ENST00000572750 TSPEAR-AS2P59090 65 aa9.83□□□□□ -0.84
CHD3-215ENST00000572750 SFTA2Q6UW10 78 aa9.82□□□□□ -0.84
CHD3-215ENST00000572750 KRTAP29-1A8MX34 341 aaPredicted RBP9.81□□□□□ -0.84
CHD3-215ENST00000572750 C3orf79P0CE67 100 aa9.81□□□□□ -0.84
CHD3-215ENST00000572750 KRTDAPP60985 99 aa9.81□□□□□ -0.84
CHD3-215ENST00000572750 LRP2P98164 4655 aa9.8□□□□□ -0.84
CHD3-215ENST00000572750 HERVK_113P61574 105 aa9.8□□□□□ -0.84
CHD3-215ENST00000572750 LINC01545Q5VT33 79 aa9.8□□□□□ -0.84
CHD3-215ENST00000572750 LEPROTO15243 131 aa9.79□□□□□ -0.84
CHD3-215ENST00000572750 PET117Q6UWS5 81 aa9.79□□□□□ -0.84
CHD3-215ENST00000572750 KRTAP11-1Q8IUC1 163 aa9.79□□□□□ -0.84
CHD3-215ENST00000572750 NDUFA12Q9UI09 145 aa9.79□□□□□ -0.84
CHD3-215ENST00000572750 COX17Q14061 63 aa9.78□□□□□ -0.84
CHD3-215ENST00000572750 PSORS1C2Q9UIG4 136 aa9.78□□□□□ -0.84
CHD3-215ENST00000572750 PLA2G2DQ9UNK4 145 aa9.78□□□□□ -0.84
CHD3-215ENST00000572750 A0A0U1RRA0 63 aa9.77□□□□□ -0.85
CHD3-215ENST00000572750 J3QQQ9 107 aa9.77□□□□□ -0.85
CHD3-215ENST00000572750 HIST3H2BBQ8N257 126 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms