RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MRPL35Q9NZE8 188 aaKnown RBP13.28□□□□□ -0.28
VPS53-210ENST00000571456 SMIM1B2RUZ4 78 aa13.27□□□□□ -0.29
VPS53-210ENST00000571456 S100A6P06703 90 aa13.27□□□□□ -0.29
VPS53-210ENST00000571456 ZNF22P17026 224 aaPredicted RBP13.27□□□□□ -0.29
VPS53-210ENST00000571456 PLNP26678 52 aa13.27□□□□□ -0.29
VPS53-210ENST00000571456 C11orf86A6NJI1 115 aa13.26□□□□□ -0.29
VPS53-210ENST00000571456 ODF1Q14990 250 aa13.26□□□□□ -0.29
VPS53-210ENST00000571456 C6orf226Q5I0X4 101 aa13.26□□□□□ -0.29
VPS53-210ENST00000571456 SDIM1Q6ZPB5 146 aa13.26□□□□□ -0.29
VPS53-210ENST00000571456 Q6ZSA8 131 aa13.26□□□□□ -0.29
VPS53-210ENST00000571456 CKS1BP61024 79 aa13.25□□□□□ -0.29
VPS53-210ENST00000571456 TMEM170BQ5T4T1 132 aa13.25□□□□□ -0.29
VPS53-210ENST00000571456 SERTAD4-AS1Q5TG53 156 aa13.25□□□□□ -0.29
VPS53-210ENST00000571456 LINC00526Q96FQ7 95 aa13.25□□□□□ -0.29
VPS53-210ENST00000571456 TRBV30A0A0K0K1B3 111 aa13.24□□□□□ -0.29
VPS53-210ENST00000571456 SMR3BP02814 79 aaPredicted RBP13.24□□□□□ -0.29
VPS53-210ENST00000571456 SFTA2Q6UW10 78 aa13.24□□□□□ -0.29
VPS53-210ENST00000571456 Q6ZRU5 148 aa13.24□□□□□ -0.29
VPS53-210ENST00000571456 TOMM7Q9P0U1 55 aa13.24□□□□□ -0.29
VPS53-210ENST00000571456 LINC00474Q9P2X8 69 aa13.24□□□□□ -0.29
VPS53-210ENST00000571456 IGLV5-39A0A0G2JS06 123 aa13.23□□□□□ -0.29
VPS53-210ENST00000571456 FAM229AH3BQW9 127 aa13.23□□□□□ -0.29
VPS53-210ENST00000571456 H0Y8G0 127 aa13.22□□□□□ -0.29
VPS53-210ENST00000571456 SYS1-DBNDD2H3BUS1 97 aa13.22□□□□□ -0.29
VPS53-210ENST00000571456 SPINK8P0C7L1 97 aa13.22□□□□□ -0.29
VPS53-210ENST00000571456 AKR1D1P51857 326 aa13.22□□□□□ -0.29
VPS53-210ENST00000571456 PET117Q6UWS5 81 aa13.22□□□□□ -0.29
VPS53-210ENST00000571456 COX7B2Q8TF08 81 aa13.22□□□□□ -0.29
VPS53-210ENST00000571456 LOC107984640A0A0U1RRK4 108 aa13.21□□□□□ -0.29
VPS53-210ENST00000571456 DPM2O94777 84 aa13.21□□□□□ -0.29
VPS53-210ENST00000571456 LINC01620Q4KN68 170 aa13.21□□□□□ -0.29
VPS53-210ENST00000571456 S100A2P29034 98 aa13.2□□□□□ -0.3
VPS53-210ENST00000571456 TMEM223A0PJW6 202 aa13.19□□□□□ -0.3
VPS53-210ENST00000571456 TLX1NBP0CAT3 122 aa13.19□□□□□ -0.3
VPS53-210ENST00000571456 CIRBPQ14011 172 aaKnown RBP13.19□□□□□ -0.3
VPS53-210ENST00000571456 IGKCP01834 107 aa13.18□□□□□ -0.3
VPS53-210ENST00000571456 UNQ6190/PRO20217Q6UXQ8 127 aa13.18□□□□□ -0.3
VPS53-210ENST00000571456 KRTAP29-1A8MX34 341 aaPredicted RBP13.17□□□□□ -0.3
VPS53-210ENST00000571456 HIST3H2BBQ8N257 126 aa13.17□□□□□ -0.3
VPS53-210ENST00000571456 C6orf48Q9UBA6 75 aa13.17□□□□□ -0.3
VPS53-210ENST00000571456 C20orf202A1L168 122 aa13.16□□□□□ -0.3
VPS53-210ENST00000571456 HERVK_113P61574 105 aa13.16□□□□□ -0.3
VPS53-210ENST00000571456 LINC01545Q5VT33 79 aa13.16□□□□□ -0.3
VPS53-210ENST00000571456 C2orf82Q6UX34 121 aa13.16□□□□□ -0.3
VPS53-210ENST00000571456 C3orf79P0CE67 100 aa13.15□□□□□ -0.3
VPS53-210ENST00000571456 C10orf25Q5T742 122 aa13.15□□□□□ -0.3
VPS53-210ENST00000571456 FAM30AQ9NZY2 134 aa13.15□□□□□ -0.3
VPS53-210ENST00000571456 NDUFC2-KCTD14E9PQ53 114 aa13.13□□□□□ -0.31
VPS53-210ENST00000571456 PTTG1IPP53801 180 aa13.13□□□□□ -0.31
VPS53-210ENST00000571456 SPACA4Q8TDM5 124 aa13.13□□□□□ -0.31
VPS53-210ENST00000571456 PLA2G2DQ9UNK4 145 aa13.13□□□□□ -0.31
VPS53-210ENST00000571456 KRTDAPP60985 99 aa13.12□□□□□ -0.31
VPS53-210ENST00000571456 HIST1H2BLQ99880 126 aa13.12□□□□□ -0.31
VPS53-210ENST00000571456 DNAH8Q96JB1 4490 aa13.11□□□□□ -0.31
VPS53-210ENST00000571456 A0A096LNI7 61 aa13.11□□□□□ -0.31
VPS53-210ENST00000571456 C5orf52A6NGY3 159 aa13.11□□□□□ -0.31
VPS53-210ENST00000571456 PLEKHB2Q96CS7 222 aa13.11□□□□□ -0.31
VPS53-210ENST00000571456 DPH3Q96FX2 82 aa13.11□□□□□ -0.31
VPS53-210ENST00000571456 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.11□□□□□ -0.31
VPS53-210ENST00000571456 SNRPEP62304 92 aaKnown RBP13.1□□□□□ -0.31
VPS53-210ENST00000571456 RPL18AQ02543 176 aaKnown RBP13.1□□□□□ -0.31
VPS53-210ENST00000571456 SCXQ7RTU7 201 aa13.1□□□□□ -0.31
VPS53-210ENST00000571456 PMCHL2Q9BQD1 86 aa13.1□□□□□ -0.31
VPS53-210ENST00000571456 IGKV2-24A0A0C4DH68 120 aa13.09□□□□□ -0.31
VPS53-210ENST00000571456 COX17Q14061 63 aa13.09□□□□□ -0.31
VPS53-210ENST00000571456 CIRBP-AS1Q8TBR5 109 aa13.09□□□□□ -0.31
VPS53-210ENST00000571456 LEPROTO15243 131 aa13.08□□□□□ -0.32
VPS53-210ENST00000571456 GAGE2BQ13066 116 aa13.08□□□□□ -0.32
VPS53-210ENST00000571456 MAJINQ3KP22 176 aa13.08□□□□□ -0.32
VPS53-210ENST00000571456 LINC00587B1AMM8 73 aa13.07□□□□□ -0.32
VPS53-210ENST00000571456 HERV-K104P63124 156 aa13.07□□□□□ -0.32
VPS53-210ENST00000571456 HAMPP81172 84 aa13.07□□□□□ -0.32
VPS53-210ENST00000571456 PLAC8Q9NZF1 115 aa13.07□□□□□ -0.32
VPS53-210ENST00000571456 LRP1Q07954 4544 aaKnown RBP13.06□□□□□ -0.32
VPS53-210ENST00000571456 CHTF8P0CG12 524 aa13.06□□□□□ -0.32
VPS53-210ENST00000571456 NMUP48645 174 aa13.06□□□□□ -0.32
VPS53-210ENST00000571456 Q6ZRP5 223 aa13.06□□□□□ -0.32
VPS53-210ENST00000571456 ZNF625Q96I27 306 aaPredicted RBP13.06□□□□□ -0.32
VPS53-210ENST00000571456 RNF213Q63HN8 5207 aa13.05□□□□□ -0.32
VPS53-210ENST00000571456 A0A087WYN8 130 aa13.05□□□□□ -0.32
VPS53-210ENST00000571456 E9PLD3 99 aa13.05□□□□□ -0.32
VPS53-210ENST00000571456 MYMXA0A1B0GTQ4 84 aa13.04□□□□□ -0.32
VPS53-210ENST00000571456 PANO1I0J062 215 aa13.04□□□□□ -0.32
VPS53-210ENST00000571456 C9orf116Q5BN46 136 aaPredicted RBP13.04□□□□□ -0.32
VPS53-210ENST00000571456 STPG4Q8N801 248 aa13.04□□□□□ -0.32
VPS53-210ENST00000571456 J3QQQ9 107 aa13.03□□□□□ -0.32
VPS53-210ENST00000571456 NDUFA12Q9UI09 145 aa13.03□□□□□ -0.32
VPS53-210ENST00000571456 LGALS3P17931 250 aaKnown RBP13.02□□□□□ -0.33
VPS53-210ENST00000571456 ERG28Q9UKR5 140 aa13.02□□□□□ -0.33
VPS53-210ENST00000571456 GAGE2EQ4V326 116 aa13.01□□□□□ -0.33
VPS53-210ENST00000571456 GAGE2DQ9UEU5 116 aa13.01□□□□□ -0.33
VPS53-210ENST00000571456 PLA2G1BP04054 148 aaKnown RBP12.99□□□□□ -0.33
VPS53-210ENST00000571456 C7orf33Q8WU49 177 aa12.97□□□□□ -0.33
VPS53-210ENST00000571456 PFN2P35080 140 aa12.95□□□□□ -0.34
VPS53-210ENST00000571456 TSPEAR-AS2P59090 65 aa12.95□□□□□ -0.34
VPS53-210ENST00000571456 MEIG1Q5JSS6 88 aa12.95□□□□□ -0.34
VPS53-210ENST00000571456 LINC00528Q8N1L1 170 aa12.95□□□□□ -0.34
VPS53-210ENST00000571456 C9orf129Q5T035 196 aaKnown RBP12.94□□□□□ -0.34
VPS53-210ENST00000571456 FAT3Q8TDW7 4589 aa12.94□□□□□ -0.34
VPS53-210ENST00000571456 HSBP1L1C9JCN9 74 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms