RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 DNAH6Q9C0G6 4158 aa5.54□□□□□ -1.52
SF3B3-212ENST00000568539 IGLV5-39A0A0G2JS06 123 aa5.53□□□□□ -1.52
SF3B3-212ENST00000568539 SPINK8P0C7L1 97 aa5.53□□□□□ -1.52
SF3B3-212ENST00000568539 HIGD2BQ4VC39 106 aa5.53□□□□□ -1.52
SF3B3-212ENST00000568539 C14orf177Q52M58 125 aa5.53□□□□□ -1.52
SF3B3-212ENST00000568539 ORAOV1Q8WV07 137 aa5.53□□□□□ -1.52
SF3B3-212ENST00000568539 DNAH2Q9P225 4427 aa5.53□□□□□ -1.52
SF3B3-212ENST00000568539 FAT2Q9NYQ8 4349 aa5.53□□□□□ -1.52
SF3B3-212ENST00000568539 hDV102S1A0JD36 115 aa5.52□□□□□ -1.53
SF3B3-212ENST00000568539 AKR1D1P51857 326 aa5.52□□□□□ -1.53
SF3B3-212ENST00000568539 SPAG11BQ08648 103 aa5.52□□□□□ -1.53
SF3B3-212ENST00000568539 KIAA0087Q14695 138 aa5.52□□□□□ -1.53
SF3B3-212ENST00000568539 NTN5Q8WTR8 489 aaPredicted RBP5.52□□□□□ -1.53
SF3B3-212ENST00000568539 DNAH11Q96DT5 4516 aa5.52□□□□□ -1.53
SF3B3-212ENST00000568539 SLPIP03973 132 aa5.51□□□□□ -1.53
SF3B3-212ENST00000568539 S100A12P80511 92 aa5.51□□□□□ -1.53
SF3B3-212ENST00000568539 JOSD1Q15040 202 aaPredicted RBP5.51□□□□□ -1.53
SF3B3-212ENST00000568539 Q8IZM0 81 aa5.51□□□□□ -1.53
SF3B3-212ENST00000568539 ATOH7Q8N100 152 aa5.51□□□□□ -1.53
SF3B3-212ENST00000568539 LINC00526Q96FQ7 95 aa5.51□□□□□ -1.53
SF3B3-212ENST00000568539 FAM30AQ9NZY2 134 aa5.51□□□□□ -1.53
SF3B3-212ENST00000568539 TOMM7Q9P0U1 55 aa5.51□□□□□ -1.53
SF3B3-212ENST00000568539 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.5□□□□□ -1.53
SF3B3-212ENST00000568539 A0A1B0GVY2 172 aa5.5□□□□□ -1.53
SF3B3-212ENST00000568539 SCGB1D1O95968 90 aa5.5□□□□□ -1.53
SF3B3-212ENST00000568539 PRSS2P07478 247 aa5.5□□□□□ -1.53
SF3B3-212ENST00000568539 KRTAP10-2P60368 255 aa5.5□□□□□ -1.53
SF3B3-212ENST00000568539 HERVK_113P61574 105 aa5.5□□□□□ -1.53
SF3B3-212ENST00000568539 CNBPP62633 177 aaKnown RBP5.5□□□□□ -1.53
SF3B3-212ENST00000568539 C6orf226Q5I0X4 101 aa5.5□□□□□ -1.53
SF3B3-212ENST00000568539 STPG4Q8N801 248 aa5.5□□□□□ -1.53
SF3B3-212ENST00000568539 COX7B2Q8TF08 81 aa5.5□□□□□ -1.53
SF3B3-212ENST00000568539 C2orf48Q96LS8 159 aa5.5□□□□□ -1.53
SF3B3-212ENST00000568539 E9PLD3 99 aa5.49□□□□□ -1.53
SF3B3-212ENST00000568539 F8WDY8 70 aa5.49□□□□□ -1.53
SF3B3-212ENST00000568539 LEPROTO15243 131 aa5.49□□□□□ -1.53
SF3B3-212ENST00000568539 C2orf82Q6UX34 121 aa5.49□□□□□ -1.53
SF3B3-212ENST00000568539 CAMK2N2Q96S95 79 aa5.49□□□□□ -1.53
SF3B3-212ENST00000568539 DNAH17Q9UFH2 4485 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 HSPG2P98160 4391 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 NDUFA1O15239 70 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 FUSP35637 526 aaKnown RBP eCLIP5.48□□□□□ -1.53
SF3B3-212ENST00000568539 CXCL5P42830 114 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 TSPEAR-AS2P59090 65 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 CKS1BP61024 79 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 SYCNQ0VAF6 134 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 MAJINQ3KP22 176 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 PYY3Q5JQD4 70 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 C10orf25Q5T742 122 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 UNQ6190/PRO20217Q6UXQ8 127 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 Q6ZRU5 148 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 PLEKHB2Q96CS7 222 aa5.48□□□□□ -1.53
SF3B3-212ENST00000568539 IGKV2D-26A0A0A0MRZ7 120 aa5.47□□□□□ -1.53
SF3B3-212ENST00000568539 IGLV5-52A0A0A0MRZ9 124 aa5.47□□□□□ -1.53
SF3B3-212ENST00000568539 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.47□□□□□ -1.53
SF3B3-212ENST00000568539 B5MCH6 92 aa5.47□□□□□ -1.53
SF3B3-212ENST00000568539 J3QQQ9 107 aa5.47□□□□□ -1.53
SF3B3-212ENST00000568539 ZNF625Q96I27 306 aaPredicted RBP5.47□□□□□ -1.53
SF3B3-212ENST00000568539 CARD19Q96LW7 228 aa5.47□□□□□ -1.53
SF3B3-212ENST00000568539 C9orf163Q8N9P6 203 aa5.46□□□□□ -1.54
SF3B3-212ENST00000568539 C6orf48Q9UBA6 75 aa5.46□□□□□ -1.54
SF3B3-212ENST00000568539 TRBV30A0A0K0K1B3 111 aa5.45□□□□□ -1.54
SF3B3-212ENST00000568539 HSBP1L1C9JCN9 74 aa5.45□□□□□ -1.54
SF3B3-212ENST00000568539 LGALS3P17931 250 aaKnown RBP5.45□□□□□ -1.54
SF3B3-212ENST00000568539 LINC01620Q4KN68 170 aa5.45□□□□□ -1.54
SF3B3-212ENST00000568539 SFTA2Q6UW10 78 aa5.45□□□□□ -1.54
SF3B3-212ENST00000568539 KRTAP4-5Q9BYR2 181 aa5.45□□□□□ -1.54
SF3B3-212ENST00000568539 NDUFA12Q9UI09 145 aa5.45□□□□□ -1.54
SF3B3-212ENST00000568539 NMUP48645 174 aa5.44□□□□□ -1.54
SF3B3-212ENST00000568539 C9orf116Q5BN46 136 aaPredicted RBP5.44□□□□□ -1.54
SF3B3-212ENST00000568539 SDIM1Q6ZPB5 146 aa5.44□□□□□ -1.54
SF3B3-212ENST00000568539 TTTY13Q9BZ97 58 aa5.44□□□□□ -1.54
SF3B3-212ENST00000568539 PKD1P98161 4303 aa5.44□□□□□ -1.54
SF3B3-212ENST00000568539 MYMXA0A1B0GTQ4 84 aa5.43□□□□□ -1.54
SF3B3-212ENST00000568539 TLX1NBP0CAT3 122 aa5.43□□□□□ -1.54
SF3B3-212ENST00000568539 GCSHP23434 173 aa5.43□□□□□ -1.54
SF3B3-212ENST00000568539 HERV-K104P63124 156 aa5.43□□□□□ -1.54
SF3B3-212ENST00000568539 VAMP8Q9BV40 100 aa5.43□□□□□ -1.54
SF3B3-212ENST00000568539 PAM16Q9Y3D7 125 aa5.43□□□□□ -1.54
SF3B3-212ENST00000568539 LOC107984640A0A0U1RRK4 108 aa5.42□□□□□ -1.54
SF3B3-212ENST00000568539 ZNF815PA8K554 130 aa5.42□□□□□ -1.54
SF3B3-212ENST00000568539 C16orf90A8MZG2 172 aa5.42□□□□□ -1.54
SF3B3-212ENST00000568539 SPATA45Q537H7 98 aa5.42□□□□□ -1.54
SF3B3-212ENST00000568539 PCP2Q8IVA1 136 aa5.42□□□□□ -1.54
SF3B3-212ENST00000568539 ERG28Q9UKR5 140 aa5.42□□□□□ -1.54
SF3B3-212ENST00000568539 A0A0J9YXY3 114 aa5.41□□□□□ -1.54
SF3B3-212ENST00000568539 NDUFC2-KCTD14E9PQ53 114 aa5.41□□□□□ -1.54
SF3B3-212ENST00000568539 SMIM6P0DI80 62 aa5.41□□□□□ -1.54
SF3B3-212ENST00000568539 PFN2P35080 140 aa5.41□□□□□ -1.54
SF3B3-212ENST00000568539 KRTAP10-1P60331 282 aa5.41□□□□□ -1.54
SF3B3-212ENST00000568539 COX17Q14061 63 aa5.41□□□□□ -1.54
SF3B3-212ENST00000568539 Q6ZRP5 223 aa5.41□□□□□ -1.54
SF3B3-212ENST00000568539 KRTAP4-8Q9BYQ9 185 aa5.41□□□□□ -1.54
SF3B3-212ENST00000568539 PKIGQ9Y2B9 76 aa5.41□□□□□ -1.54
SF3B3-212ENST00000568539 A0A096LNI7 61 aa5.4□□□□□ -1.54
SF3B3-212ENST00000568539 LINC00587B1AMM8 73 aa5.4□□□□□ -1.54
SF3B3-212ENST00000568539 COX8AP10176 69 aa5.4□□□□□ -1.54
SF3B3-212ENST00000568539 PTTG1IPP53801 180 aa5.4□□□□□ -1.54
SF3B3-212ENST00000568539 RPL18AQ02543 176 aaKnown RBP5.4□□□□□ -1.54
SF3B3-212ENST00000568539 MEIG1Q5JSS6 88 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms